Wall clock time and date at job start Sun Mar 29 2020 21:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 110.49289 * 2 1 4 4 C 1.54577 * 110.44002 * 122.48850 * 2 1 3 5 5 C 1.54489 * 102.14590 * 145.59166 * 4 2 1 6 6 H 1.08996 * 110.37114 * 103.49156 * 5 4 2 7 7 N 1.46508 * 110.36651 * 225.81802 * 5 4 2 8 8 C 1.34775 * 119.99930 * 204.99637 * 7 5 4 9 9 O 1.21680 * 119.99905 * 0.02562 * 8 7 5 10 10 C 1.46379 * 119.99587 * 179.97438 * 8 7 5 11 11 H 1.07998 * 120.00309 * 0.02562 * 10 8 7 12 12 C 1.40048 * 119.99530 * 180.02562 * 10 8 7 13 13 N 1.30668 * 120.00418 * 0.02562 * 12 10 8 14 14 Si 1.86799 * 119.99771 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47044 * 90.00471 * 14 12 10 16 16 H 1.48503 * 109.47281 * 210.00239 * 14 12 10 17 17 H 1.48506 * 109.47162 * 330.00184 * 14 12 10 18 18 C 1.51331 * 104.82302 * 344.64992 * 5 4 2 19 19 O 1.20833 * 125.09253 * 177.71860 * 18 5 4 20 20 O 1.34061 * 109.81197 * 357.69002 * 18 5 4 21 21 H 1.09004 * 109.47235 * 297.51557 * 1 2 3 22 22 H 1.09004 * 109.46997 * 57.51024 * 1 2 3 23 23 H 1.08997 * 109.47309 * 177.51490 * 1 2 3 24 24 H 1.09004 * 110.86443 * 263.75018 * 4 2 1 25 25 H 1.08993 * 110.86729 * 27.21695 * 4 2 1 26 26 H 0.97005 * 119.99958 * 24.99904 * 7 5 4 27 27 H 0.96995 * 120.00773 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9116 1.0211 0.0000 4 6 2.0698 -0.7780 1.2218 5 6 3.3509 -1.4278 0.6532 6 1 4.2343 -0.8917 1.0001 7 7 3.4233 -2.8382 1.0428 8 6 4.6182 -3.4579 1.1113 9 8 5.6368 -2.8458 0.8501 10 6 4.6904 -4.8670 1.5011 11 1 3.7863 -5.4102 1.7333 12 6 5.9321 -5.5108 1.5728 13 7 7.0261 -4.8536 1.2924 14 14 6.0245 -7.3088 2.0709 15 1 5.9307 -8.1633 0.8601 16 1 7.3148 -7.5661 2.7595 17 1 4.9014 -7.6264 2.9892 18 6 3.2147 -1.3025 -0.8488 19 8 4.0414 -1.6616 -1.6536 20 8 2.0392 -0.7341 -1.1526 21 1 -0.3634 0.4748 0.9114 22 1 -0.3633 0.5520 -0.8669 23 1 -0.3634 -1.0267 -0.0446 24 1 2.3093 -0.0986 2.0398 25 1 1.3567 -1.5362 1.5452 26 1 2.6112 -3.3261 1.2513 27 1 7.8861 -5.2993 1.3424 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326800411.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:54 Heat of formation + Delta-G solvation = -153.271875 kcal Electronic energy + Delta-G solvation = -14222.973396 eV Core-core repulsion = 11558.629252 eV Total energy + Delta-G solvation = -2664.344144 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.13435 -39.23897 -38.71209 -35.61235 -34.55892 -33.28505 -30.74203 -28.19052 -25.59170 -23.05681 -22.78493 -21.21402 -19.50575 -18.34506 -17.91442 -17.46067 -17.30776 -16.00064 -15.76557 -15.36442 -14.76599 -14.42958 -14.24510 -13.80201 -13.46842 -13.06111 -12.90449 -12.87380 -12.78183 -12.65202 -12.04912 -11.92110 -11.67261 -11.48502 -10.95170 -9.94809 -9.61127 -8.32268 -6.90339 0.93264 1.39759 1.41782 1.57338 2.07533 2.24509 2.42813 2.94294 3.08053 3.32766 3.66790 3.77998 3.95957 4.25581 4.29300 4.79637 4.82352 4.93783 5.04197 5.29203 5.31691 5.74019 5.82199 6.00893 6.18328 6.43313 6.82957 7.41151 8.42663 8.63420 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.057280 B = 0.007701 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.710981 B = 3634.892367 C = 3834.664301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 H 0.119 0.881 4 C -0.138 4.138 5 C 0.093 3.907 6 H 0.094 0.906 7 N -0.733 5.733 8 C 0.534 3.466 9 O -0.620 6.620 10 C -0.571 4.571 11 H 0.093 0.907 12 C 0.025 3.975 13 N -0.822 5.822 14 Si 1.003 2.997 15 H -0.266 1.266 16 H -0.272 1.272 17 H -0.243 1.243 18 C 0.464 3.536 19 O -0.503 6.503 20 O -0.361 6.361 21 H 0.115 0.885 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.133 0.867 25 H 0.114 0.886 26 H 0.403 0.597 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.095 6.744 3.851 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.017 3.983 3 H 0.137 0.863 4 C -0.175 4.175 5 C -0.016 4.016 6 H 0.112 0.888 7 N -0.391 5.391 8 C 0.339 3.661 9 O -0.506 6.506 10 C -0.607 4.607 11 H 0.111 0.889 12 C -0.190 4.190 13 N -0.451 5.451 14 Si 0.821 3.179 15 H -0.191 1.191 16 H -0.197 1.197 17 H -0.166 1.166 18 C 0.303 3.697 19 O -0.387 6.387 20 O -0.278 6.278 21 H 0.133 0.867 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.151 0.849 25 H 0.132 0.868 26 H 0.239 0.761 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.919 7.052 3.070 15.902 hybrid contribution 0.376 -0.849 -0.111 0.935 sum -13.543 6.203 2.959 15.187 Atomic orbital electron populations 1.21952 0.89110 1.03970 1.05040 1.24212 0.98129 0.95583 0.80369 0.86350 1.23391 0.93702 1.01517 0.98897 1.21971 1.02503 0.87316 0.89798 0.88773 1.45748 1.09727 1.09144 1.74461 1.18773 0.81629 0.88626 0.77092 1.90583 1.36081 1.68270 1.55673 1.21427 0.95171 0.94449 1.49680 0.88868 1.27055 0.94277 1.05455 0.92180 1.70195 0.99451 1.39454 1.35995 0.84954 0.79099 0.74659 0.79151 1.19097 1.19689 1.16555 1.24429 0.79116 0.73094 0.93032 1.90682 1.41764 1.47193 1.59091 1.87000 1.34224 1.63204 1.43372 0.86699 0.90914 0.91691 0.84897 0.86771 0.76077 0.91501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.56 71.98 0.69 -1.06 15 2 C 0.07 1.37 4.18 31.13 0.13 1.50 15 3 H 0.12 1.74 8.14 -2.38 -0.02 1.72 15 4 C -0.14 -2.85 6.45 31.64 0.20 -2.64 15 5 C 0.09 3.51 3.33 44.95 0.15 3.66 15 6 H 0.09 4.02 7.56 -2.39 -0.02 4.00 15 7 N -0.73 -32.62 5.12 -447.01 -2.29 -34.90 15 8 C 0.53 31.59 7.75 86.36 0.67 32.26 15 9 O -0.62 -42.92 14.67 -4.28 -0.06 -42.98 15 10 C -0.57 -32.68 9.54 24.83 0.24 -32.44 15 11 H 0.09 4.68 7.85 -2.91 -0.02 4.66 15 12 C 0.03 1.44 5.50 85.31 0.47 1.91 15 13 N -0.82 -51.65 11.83 21.84 0.26 -51.39 15 14 Si 1.00 41.37 29.56 68.60 2.03 43.40 15 15 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 16 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 17 H -0.24 -9.06 7.11 99.48 0.71 -8.35 15 18 C 0.46 19.89 8.21 71.44 0.59 20.48 15 19 O -0.50 -27.79 18.00 21.62 0.39 -27.40 15 20 O -0.36 -11.85 10.76 -50.13 -0.54 -12.39 15 21 H 0.11 0.67 8.14 -2.39 -0.02 0.65 15 22 H 0.07 0.85 8.14 -2.38 -0.02 0.84 15 23 H 0.06 0.88 8.14 -2.39 -0.02 0.86 15 24 H 0.13 1.94 8.14 -2.39 -0.02 1.92 15 25 H 0.11 1.95 7.50 -2.39 -0.02 1.93 15 26 H 0.40 14.78 8.34 -92.70 -0.77 14.01 15 27 H 0.28 15.65 8.29 -92.71 -0.77 14.88 15 Total: -1.00 -88.29 246.01 3.34 -84.95 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.42 Total: 17.06 kcal Atomic # 6 Polarization: 20.53 SS G_CDS: 3.13 Total: 23.66 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.03 Total: -86.29 kcal Atomic # 8 Polarization: -82.56 SS G_CDS: -0.21 Total: -82.77 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -88.29 3.34 -84.95 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326800411.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.327 kcal (2) G-P(sol) polarization free energy of solvation -88.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds