Wall clock time and date at job start Sun Mar 29 2020 21:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00152 * 2 1 4 4 O 1.20832 * 119.99807 * 0.02562 * 3 2 1 5 5 C 1.50698 * 120.00260 * 180.02562 * 3 2 1 6 6 C 1.53950 * 113.74161 * 81.26404 * 5 3 2 7 7 N 1.47925 * 85.99684 * 138.00415 * 6 5 3 8 8 C 1.34780 * 134.49772 * 155.35643 * 7 6 5 9 9 O 1.21692 * 119.99663 * 179.97438 * 8 7 6 10 10 C 1.46371 * 120.00152 * 359.97438 * 8 7 6 11 11 H 1.08001 * 120.00234 * 0.02562 * 10 8 7 12 12 C 1.40054 * 120.00026 * 179.97438 * 10 8 7 13 13 N 1.30671 * 119.99737 * 0.02562 * 12 10 8 14 14 Si 1.86796 * 120.00126 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47098 * 90.00076 * 14 12 10 16 16 H 1.48498 * 109.47218 * 210.00349 * 14 12 10 17 17 H 1.48506 * 109.47108 * 330.00280 * 14 12 10 18 18 C 1.47579 * 91.00789 * 335.35638 * 7 6 5 19 19 H 1.09005 * 109.47582 * 60.00106 * 1 2 3 20 20 H 1.09007 * 109.47321 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47238 * 299.99530 * 1 2 3 22 22 H 1.09002 * 112.94317 * 309.66981 * 5 3 2 23 23 H 1.09006 * 113.76402 * 252.36573 * 6 5 3 24 24 H 1.08997 * 113.76968 * 23.75198 * 6 5 3 25 25 H 0.96995 * 120.00297 * 179.97438 * 13 12 10 26 26 H 1.09003 * 113.77049 * 270.34039 * 18 7 6 27 27 H 1.08993 * 113.77081 * 138.93800 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.1959 1.0939 -1.3937 7 7 5.1017 2.2000 -1.0140 8 6 6.3356 2.5843 -1.3966 9 8 6.8490 3.5676 -0.8963 10 6 7.0579 1.8188 -2.4138 11 1 6.6021 0.9463 -2.8581 12 6 8.3399 2.2185 -2.8118 13 7 8.8912 3.2744 -2.2746 14 14 9.2615 1.2421 -4.1104 15 1 8.9449 1.7855 -5.4557 16 1 10.7223 1.3476 -3.8651 17 1 8.8500 -0.1832 -4.0429 18 6 4.1115 2.7138 -0.0478 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 4.0244 0.6571 0.7718 23 1 4.7001 0.1367 -1.5269 24 1 3.5229 1.3394 -2.2152 25 1 9.7792 3.5510 -2.5499 26 1 3.4138 3.4342 -0.4748 27 1 4.5484 3.0491 0.8928 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337563725.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:17 Heat of formation + Delta-G solvation = -85.504916 kcal Electronic energy + Delta-G solvation = -13894.194471 eV Core-core repulsion = 11232.788923 eV Total energy + Delta-G solvation = -2661.405548 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.62559 -38.55697 -36.40024 -35.61824 -32.52634 -29.55434 -27.74112 -26.28373 -25.32103 -23.19895 -20.27252 -18.83039 -17.69799 -16.99057 -16.47765 -16.22844 -15.56699 -14.55692 -14.12451 -13.93200 -13.29631 -12.75218 -12.45333 -12.20393 -12.13734 -11.91373 -11.37714 -11.16772 -10.95254 -10.81087 -10.74348 -10.37802 -10.26941 -10.15375 -8.90934 -7.73010 -7.40038 -6.25581 -4.71136 2.26161 2.74969 3.11668 3.18214 3.21893 3.94644 4.22159 4.48475 4.59720 4.99380 5.03423 5.10169 5.30309 5.44638 5.47025 5.76465 5.94802 6.05229 6.14158 6.40139 6.54605 6.59743 7.38212 7.81526 8.01733 8.36794 8.95627 9.45342 10.49932 10.69081 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.057660 B = 0.006859 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.485095 B = 4081.479109 C = 4473.778013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.473 3.527 4 O -0.507 6.507 5 C -0.128 4.128 6 C 0.135 3.865 7 N -0.662 5.662 8 C 0.578 3.422 9 O -0.571 6.571 10 C -0.536 4.536 11 H 0.070 0.930 12 C 0.086 3.914 13 N -0.767 5.767 14 Si 0.912 3.088 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.264 1.264 18 C 0.128 3.872 19 H 0.061 0.939 20 H 0.098 0.902 21 H 0.060 0.940 22 H 0.130 0.870 23 H 0.086 0.914 24 H 0.068 0.932 25 H 0.270 0.730 26 H 0.078 0.922 27 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.810 -8.476 2.092 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.275 6.275 3 C 0.316 3.684 4 O -0.395 6.395 5 C -0.148 4.148 6 C 0.010 3.990 7 N -0.405 5.405 8 C 0.386 3.614 9 O -0.452 6.452 10 C -0.573 4.573 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.396 5.396 14 Si 0.736 3.264 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 C 0.004 3.996 19 H 0.080 0.920 20 H 0.117 0.883 21 H 0.079 0.921 22 H 0.148 0.852 23 H 0.104 0.896 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.096 0.904 27 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.339 -7.416 2.313 13.745 hybrid contribution 0.053 -0.476 -0.641 0.801 sum -11.286 -7.893 1.671 13.873 Atomic orbital electron populations 1.23232 0.76951 1.03413 1.02410 1.86555 1.22988 1.33831 1.84097 1.23881 0.91841 0.81103 0.71611 1.90650 1.67064 1.36444 1.45297 1.23452 0.85954 1.02488 1.02932 1.22662 0.90635 0.93795 0.91919 1.50362 1.15240 1.30729 1.44139 1.18097 0.76587 0.84393 0.82274 1.90630 1.66199 1.29352 1.59052 1.20808 1.00911 1.13285 1.22261 0.91209 1.25749 0.97192 0.94416 0.96083 1.70013 1.13839 1.20274 1.35457 0.86298 0.78626 0.80570 0.80858 1.19669 1.20357 1.18793 1.22684 0.89893 0.91902 0.95148 0.92000 0.88309 0.92092 0.85196 0.89614 0.91362 0.91898 0.90439 0.90537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.55 101.05 1.07 1.38 15 2 O -0.36 -4.57 10.56 -39.25 -0.41 -4.98 15 3 C 0.47 7.04 7.49 36.00 0.27 7.31 15 4 O -0.51 -8.74 15.66 -18.76 -0.29 -9.03 15 5 C -0.13 -1.99 4.44 -90.84 -0.40 -2.39 15 6 C 0.13 2.36 8.03 -2.77 -0.02 2.34 15 7 N -0.66 -15.39 3.62 -179.79 -0.65 -16.04 15 8 C 0.58 16.86 7.98 -12.99 -0.10 16.76 15 9 O -0.57 -18.96 15.75 5.20 0.08 -18.88 15 10 C -0.54 -15.18 9.33 -35.63 -0.33 -15.51 15 11 H 0.07 1.80 7.68 -52.49 -0.40 1.40 15 12 C 0.09 2.38 5.50 -17.36 -0.10 2.29 15 13 N -0.77 -23.01 11.83 55.55 0.66 -22.35 15 14 Si 0.91 19.96 29.56 -169.99 -5.02 14.93 15 15 H -0.27 -5.81 7.11 56.52 0.40 -5.41 15 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 17 H -0.26 -5.55 7.11 56.52 0.40 -5.14 15 18 C 0.13 2.47 8.17 -2.96 -0.02 2.44 15 19 H 0.06 0.58 8.13 -51.93 -0.42 0.15 15 20 H 0.10 0.62 8.14 -51.92 -0.42 0.20 15 21 H 0.06 0.55 8.13 -51.93 -0.42 0.13 15 22 H 0.13 1.77 8.14 -51.93 -0.42 1.35 15 23 H 0.09 1.39 8.14 -51.93 -0.42 0.97 15 24 H 0.07 1.13 8.09 -51.93 -0.42 0.71 15 25 H 0.27 7.31 8.29 -40.82 -0.34 6.97 15 26 H 0.08 1.50 7.44 -51.93 -0.39 1.12 15 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 15 LS Contribution 250.13 15.07 3.77 3.77 Total: -1.00 -35.64 250.13 -4.40 -40.04 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -2.88 Total: -2.08 kcal Atomic # 6 Polarization: 14.26 SS G_CDS: 0.35 Total: 14.62 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.01 Total: -38.39 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -0.63 Total: -32.90 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.64 -4.40 -40.04 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337563725.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.468 kcal (2) G-P(sol) polarization free energy of solvation -35.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds