Wall clock time and date at job start Sun Mar 29 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 112.99981 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00002 * 180.02562 * 5 4 3 7 7 O 1.21691 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.46370 * 120.00088 * 180.02562 * 6 5 4 9 9 H 1.07996 * 119.99908 * 359.97438 * 8 6 5 10 10 C 1.40051 * 119.99896 * 179.97438 * 8 6 5 11 11 N 1.30672 * 120.00144 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00123 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46908 * 59.99783 * 12 10 8 14 14 H 1.48497 * 109.47344 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46876 * 300.00155 * 12 10 8 16 16 C 1.54033 * 113.81239 * 48.17754 * 3 2 1 17 17 O 1.44448 * 85.42623 * 223.23444 * 16 3 2 18 18 C 1.44186 * 93.37660 * 24.08850 * 17 16 3 19 19 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.08993 * 109.47296 * 300.00347 * 4 3 2 25 25 H 1.09004 * 109.46881 * 60.00634 * 4 3 2 26 26 H 0.97002 * 120.00188 * 359.97438 * 5 4 3 27 27 H 0.97000 * 120.00467 * 179.97438 * 11 10 8 28 28 H 1.08999 * 113.87116 * 337.33995 * 16 3 2 29 29 H 1.08998 * 113.87007 * 109.05051 * 16 3 2 30 30 H 1.08994 * 113.86502 * 221.76872 * 18 17 16 31 31 H 1.09001 * 113.86071 * 90.06260 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 0.0006 5 7 3.9694 2.9454 0.0012 6 6 5.2768 3.2728 0.0013 7 8 6.1230 2.3982 0.0014 8 6 5.6788 4.6802 0.0024 9 1 4.9278 5.4563 0.0028 10 6 7.0374 5.0203 0.0031 11 7 7.9461 4.0813 0.0032 12 14 7.5506 6.8165 0.0038 13 1 7.0129 7.4844 1.2163 14 1 9.0327 6.9079 0.0051 15 1 7.0139 7.4851 -1.2087 16 6 1.3613 2.3421 1.0502 17 8 1.3053 3.3306 -0.0017 18 6 1.3613 2.3422 -1.0500 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.9610 1.0463 0.8908 25 1 3.9617 1.0462 -0.8892 26 1 3.2949 3.6425 0.0008 27 1 8.8871 4.3168 0.0032 28 1 0.3832 1.9843 1.3716 29 1 2.0108 2.6171 1.8812 30 1 2.0107 2.6172 -1.8811 31 1 0.3831 1.9844 -1.3714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468145635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:16 Heat of formation + Delta-G solvation = -56.999483 kcal Electronic energy + Delta-G solvation = -14568.820168 eV Core-core repulsion = 12044.483803 eV Total energy + Delta-G solvation = -2524.336365 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.85822 -36.90048 -34.12004 -32.87366 -32.06139 -28.70503 -26.44216 -26.31750 -24.70163 -22.99230 -19.53375 -18.55259 -17.21706 -16.06927 -15.84348 -15.61160 -15.06765 -14.09084 -13.91020 -13.81304 -13.77815 -12.91996 -12.43302 -12.21226 -11.90440 -11.44357 -11.27415 -11.18683 -10.92801 -10.84155 -10.40449 -10.26880 -10.19829 -10.14805 -9.24599 -8.77942 -7.53917 -7.38420 -6.11515 -4.55975 3.20972 3.25023 3.27679 3.83944 4.17642 4.29645 4.66421 4.77958 4.86734 5.05520 5.21432 5.33995 5.48751 5.48929 5.73747 5.77941 5.85813 5.85992 6.06343 6.12186 6.21038 6.23577 6.30543 6.48607 6.53736 7.50821 8.08528 8.23178 8.43350 9.09921 9.67444 10.68021 10.87323 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058838 B = 0.007360 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.767919 B = 3803.676755 C = 4129.525088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.114 4.114 3 C -0.135 4.135 4 C 0.156 3.844 5 N -0.768 5.768 6 C 0.554 3.446 7 O -0.586 6.586 8 C -0.545 4.545 9 H 0.067 0.933 10 C 0.088 3.912 11 N -0.771 5.771 12 Si 0.907 3.093 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.268 1.268 16 C 0.037 3.963 17 O -0.374 6.374 18 C 0.038 3.962 19 H 0.057 0.943 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.391 0.609 27 H 0.268 0.732 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 -4.547 0.000 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.152 4.152 3 C -0.136 4.136 4 C 0.031 3.969 5 N -0.429 5.429 6 C 0.358 3.642 7 O -0.469 6.469 8 C -0.582 4.582 9 H 0.085 0.915 10 C -0.132 4.132 11 N -0.400 5.400 12 Si 0.732 3.268 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.193 1.193 16 C -0.039 4.039 17 O -0.292 6.292 18 C -0.039 4.039 19 H 0.076 0.924 20 H 0.076 0.924 21 H 0.074 0.926 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.227 0.773 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.766 -4.955 0.001 13.694 hybrid contribution -0.059 0.974 -0.001 0.976 sum -12.824 -3.980 -0.001 13.428 Atomic orbital electron populations 1.21983 0.95863 1.01642 1.02009 1.21401 0.95560 0.95328 1.02892 1.23921 0.97740 0.95816 0.96097 1.20529 0.88278 0.87160 1.00977 1.46346 1.09252 1.04812 1.82449 1.18202 0.79403 0.90295 0.76299 1.90584 1.50206 1.51059 1.55092 1.20868 0.92170 0.90883 1.54256 0.91512 1.25704 0.96390 0.98423 0.92641 1.70019 1.01006 1.33247 1.35681 0.86445 0.77589 0.83295 0.79458 1.19306 1.20612 1.19301 1.24237 0.99662 0.87162 0.92854 1.89656 1.95308 1.27346 1.16902 1.24185 0.99636 0.87194 0.92888 0.92360 0.92361 0.92598 0.91205 0.91207 0.92866 0.92867 0.77264 0.92171 0.90068 0.88928 0.88964 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.14 37.16 0.34 -1.09 16 2 C -0.11 -1.27 5.71 -26.73 -0.15 -1.43 16 3 C -0.14 -1.94 1.38 -153.43 -0.21 -2.15 16 4 C 0.16 3.06 5.26 -4.04 -0.02 3.04 16 5 N -0.77 -18.13 5.10 -61.72 -0.31 -18.45 16 6 C 0.55 16.42 7.75 -12.99 -0.10 16.32 16 7 O -0.59 -19.52 15.02 5.20 0.08 -19.45 16 8 C -0.54 -16.07 9.54 -35.63 -0.34 -16.41 16 9 H 0.07 1.83 7.85 -52.49 -0.41 1.42 16 10 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 11 N -0.77 -23.73 11.83 55.55 0.66 -23.07 16 12 Si 0.91 20.78 29.56 -169.99 -5.02 15.76 16 13 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 16 C 0.04 0.52 7.75 37.64 0.29 0.82 16 17 O -0.37 -6.12 10.35 -35.23 -0.36 -6.49 16 18 C 0.04 0.53 7.74 37.64 0.29 0.82 16 19 H 0.06 0.51 6.07 -51.93 -0.32 0.19 16 20 H 0.06 0.51 6.07 -51.93 -0.32 0.19 16 21 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.39 8.68 5.81 -40.82 -0.24 8.45 16 27 H 0.27 7.47 8.29 -40.82 -0.34 7.14 16 28 H 0.08 0.91 5.83 -51.93 -0.30 0.61 16 29 H 0.09 1.40 8.10 -51.93 -0.42 0.97 16 30 H 0.09 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.08 0.91 5.83 -51.93 -0.30 0.60 16 LS Contribution 255.59 15.07 3.85 3.85 Total: -1.00 -34.81 255.59 -5.09 -39.90 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -3.97 Total: 5.58 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: 0.00 Total: 2.36 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.34 Total: -41.52 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.29 Total: -25.93 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.81 -5.09 -39.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468145635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.095 kcal (2) G-P(sol) polarization free energy of solvation -34.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds