Wall clock time and date at job start Sun Mar 29 2020 22:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 112.99981 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46967 * 180.02562 * 4 3 2 6 6 C 1.34774 * 120.00002 * 180.02562 * 5 4 3 7 7 O 1.21691 * 119.99694 * 359.97438 * 6 5 4 8 8 C 1.46370 * 120.00088 * 180.02562 * 6 5 4 9 9 H 1.07996 * 119.99908 * 359.97438 * 8 6 5 10 10 C 1.40051 * 119.99896 * 179.97438 * 8 6 5 11 11 N 1.30672 * 120.00144 * 359.97438 * 10 8 6 12 12 Si 1.86802 * 120.00123 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.46908 * 59.99783 * 12 10 8 14 14 H 1.48497 * 109.47344 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46876 * 300.00155 * 12 10 8 16 16 C 1.54033 * 113.81239 * 48.17754 * 3 2 1 17 17 O 1.44448 * 85.42623 * 223.23444 * 16 3 2 18 18 C 1.44186 * 93.37660 * 24.08850 * 17 16 3 19 19 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 20 20 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 23 23 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 24 24 H 1.08993 * 109.47296 * 300.00347 * 4 3 2 25 25 H 1.09004 * 109.46881 * 60.00634 * 4 3 2 26 26 H 0.97002 * 120.00188 * 359.97438 * 5 4 3 27 27 H 0.97000 * 120.00467 * 179.97438 * 11 10 8 28 28 H 1.08999 * 113.87116 * 337.33995 * 16 3 2 29 29 H 1.08998 * 113.87007 * 109.05051 * 16 3 2 30 30 H 1.08994 * 113.86502 * 221.76872 * 18 17 16 31 31 H 1.09001 * 113.86071 * 90.06260 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5671 1.5367 0.0006 5 7 3.9694 2.9454 0.0012 6 6 5.2768 3.2728 0.0013 7 8 6.1230 2.3982 0.0014 8 6 5.6788 4.6802 0.0024 9 1 4.9278 5.4563 0.0028 10 6 7.0374 5.0203 0.0031 11 7 7.9461 4.0813 0.0032 12 14 7.5506 6.8165 0.0038 13 1 7.0129 7.4844 1.2163 14 1 9.0327 6.9079 0.0051 15 1 7.0139 7.4851 -1.2087 16 6 1.3613 2.3421 1.0502 17 8 1.3053 3.3306 -0.0017 18 6 1.3613 2.3422 -1.0500 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8899 24 1 3.9610 1.0463 0.8908 25 1 3.9617 1.0462 -0.8892 26 1 3.2949 3.6425 0.0008 27 1 8.8871 4.3168 0.0032 28 1 0.3832 1.9843 1.3716 29 1 2.0108 2.6171 1.8812 30 1 2.0107 2.6172 -1.8811 31 1 0.3831 1.9844 -1.3714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001468145635.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:16 Heat of formation + Delta-G solvation = -83.676301 kcal Electronic energy + Delta-G solvation = -14569.976962 eV Core-core repulsion = 12044.483803 eV Total energy + Delta-G solvation = -2525.493159 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.08825 -39.08729 -35.41767 -34.73953 -34.13514 -30.18677 -28.25890 -27.56456 -26.16066 -24.15610 -21.62432 -20.02505 -18.88907 -17.62049 -17.21266 -16.97331 -16.82188 -15.78234 -15.62122 -15.57239 -14.75744 -14.28685 -14.11850 -13.90718 -13.17147 -13.04170 -12.78279 -12.69515 -12.62956 -12.21600 -12.20077 -12.01286 -11.39324 -11.26784 -10.93012 -10.41494 -9.88941 -9.46615 -8.30298 -6.87279 1.38610 1.42647 1.54396 2.24406 2.45617 2.65284 3.14050 3.24371 3.61491 3.66376 4.06098 4.17726 4.19178 4.54756 4.57734 4.61350 4.72669 4.76474 4.78437 5.00545 5.12180 5.19920 5.26166 5.27709 5.29796 5.47331 5.88015 6.24957 6.28934 6.85083 7.56612 8.48140 8.66194 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058838 B = 0.007360 C = 0.006779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.767919 B = 3803.676755 C = 4129.525088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.130 4.130 4 C 0.153 3.847 5 N -0.755 5.755 6 C 0.536 3.464 7 O -0.635 6.635 8 C -0.577 4.577 9 H 0.081 0.919 10 C 0.029 3.971 11 N -0.822 5.822 12 Si 0.999 3.001 13 H -0.255 1.255 14 H -0.270 1.270 15 H -0.255 1.255 16 C 0.042 3.958 17 O -0.402 6.402 18 C 0.042 3.958 19 H 0.064 0.936 20 H 0.064 0.936 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.399 0.601 27 H 0.275 0.725 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.437 -3.619 0.002 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.147 4.147 3 C -0.131 4.131 4 C 0.029 3.971 5 N -0.414 5.414 6 C 0.340 3.660 7 O -0.523 6.523 8 C -0.613 4.613 9 H 0.099 0.901 10 C -0.186 4.186 11 N -0.451 5.451 12 Si 0.818 3.182 13 H -0.179 1.179 14 H -0.195 1.195 15 H -0.179 1.179 16 C -0.034 4.034 17 O -0.321 6.321 18 C -0.034 4.034 19 H 0.083 0.917 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.089 0.911 23 H 0.089 0.911 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.237 0.763 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.702 -4.038 0.003 15.246 hybrid contribution 0.494 0.610 -0.002 0.784 sum -14.208 -3.428 0.001 14.616 Atomic orbital electron populations 1.21960 0.93399 1.03008 1.02631 1.21400 0.97505 0.92647 1.03139 1.23754 0.93618 0.98589 0.97110 1.20654 0.92542 0.84418 0.99531 1.46066 1.07621 1.06958 1.80780 1.18606 0.80829 0.90473 0.76123 1.90533 1.52058 1.52222 1.57468 1.21390 0.93581 0.91322 1.55029 0.90081 1.26986 0.95866 1.04622 0.91108 1.70179 1.01819 1.36739 1.36376 0.85058 0.77546 0.75301 0.80280 1.17890 1.19498 1.17880 1.24392 1.01173 0.86097 0.91771 1.89623 1.95497 1.28879 1.18112 1.24339 1.01140 0.86139 0.91808 0.91664 0.91673 0.90975 0.91068 0.91066 0.94350 0.94357 0.76326 0.91473 0.86222 0.90673 0.90720 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.14 71.98 0.66 -1.51 16 2 C -0.11 -2.20 5.71 30.60 0.17 -2.03 16 3 C -0.13 -3.60 1.38 -51.48 -0.07 -3.67 16 4 C 0.15 6.20 5.26 86.38 0.45 6.65 16 5 N -0.76 -36.73 5.10 -467.42 -2.38 -39.12 16 6 C 0.54 32.91 7.75 86.36 0.67 33.58 16 7 O -0.63 -44.30 15.02 -4.32 -0.06 -44.37 16 8 C -0.58 -34.61 9.54 24.83 0.24 -34.37 16 9 H 0.08 4.46 7.85 -2.91 -0.02 4.44 16 10 C 0.03 1.69 5.50 85.31 0.47 2.16 16 11 N -0.82 -51.84 11.83 21.84 0.26 -51.58 16 12 Si 1.00 42.46 29.56 68.60 2.03 44.49 16 13 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 14 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 15 H -0.25 -10.21 7.11 99.48 0.71 -9.51 16 16 C 0.04 1.09 7.75 72.30 0.56 1.66 16 17 O -0.40 -12.60 10.35 -148.98 -1.54 -14.14 16 18 C 0.04 1.10 7.74 72.29 0.56 1.66 16 19 H 0.06 0.85 6.07 -2.39 -0.01 0.83 16 20 H 0.06 0.85 6.07 -2.38 -0.01 0.83 16 21 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 25 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 26 H 0.40 18.00 5.81 -92.71 -0.54 17.46 16 27 H 0.28 15.67 8.29 -92.71 -0.77 14.90 16 28 H 0.12 2.25 5.83 -2.39 -0.01 2.23 16 29 H 0.07 2.23 8.10 -2.39 -0.02 2.21 16 30 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 31 H 0.12 2.24 5.83 -2.39 -0.01 2.23 16 Total: -1.00 -78.20 255.59 2.61 -75.59 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.60 Total: 25.00 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 3.71 Total: 4.13 kcal Atomic # 7 Polarization: -88.57 SS G_CDS: -2.12 Total: -90.70 kcal Atomic # 8 Polarization: -56.90 SS G_CDS: -1.61 Total: -58.51 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -78.20 2.61 -75.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468145635.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.083 kcal (2) G-P(sol) polarization free energy of solvation -78.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds