Wall clock time and date at job start Sun Mar 29 2020 21:46:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 H 1.08994 * 109.47054 * 2 1
4 4 C 1.50703 * 109.46768 * 119.99808 * 2 1 3
5 5 C 1.35344 * 123.76171 * 274.72815 * 4 2 1
6 6 S 1.72126 * 104.15034 * 179.90587 * 5 4 2
7 7 N 1.56518 * 95.88340 * 0.32187 * 6 5 4
8 8 N 1.27580 * 109.21881 * 359.80711 * 7 6 5
9 9 N 1.46503 * 109.47166 * 239.99631 * 2 1 3
10 10 C 1.46499 * 119.99974 * 300.00070 * 9 2 1
11 11 C 1.36932 * 119.99834 * 120.00217 * 9 2 1
12 12 H 1.08003 * 119.99802 * 339.04454 * 11 9 2
13 13 C 1.38809 * 120.00268 * 158.77108 * 11 9 2
14 14 N 1.31625 * 119.99566 * 348.08797 * 13 11 9
15 15 Si 1.86794 * 120.00309 * 168.08461 * 13 11 9
16 16 H 1.48498 * 109.47229 * 60.00317 * 15 13 11
17 17 H 1.48501 * 109.47020 * 179.97438 * 15 13 11
18 18 H 1.48499 * 109.47236 * 299.99944 * 15 13 11
19 19 H 1.09004 * 109.46944 * 179.97438 * 1 2 3
20 20 H 1.08990 * 109.47067 * 300.00264 * 1 2 3
21 21 H 1.09001 * 109.46699 * 60.00925 * 1 2 3
22 22 H 1.07994 * 127.92926 * 359.97438 * 5 4 2
23 23 H 1.09001 * 109.46787 * 264.81866 * 10 9 2
24 24 H 1.09000 * 109.47047 * 24.81666 * 10 9 2
25 25 H 1.08994 * 109.47190 * 144.82007 * 10 9 2
26 26 H 0.97002 * 119.99795 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 2.1956 -0.1093 2.4321
6 16 2.7783 -1.3649 3.4551
7 7 2.7801 -2.4794 2.3561
8 7 2.3669 -1.9843 1.2553
9 7 2.0185 -0.6907 -1.1961
10 6 1.6645 -2.0933 -1.4279
11 6 2.8057 -0.0253 -2.0975
12 1 2.7968 1.0543 -2.1287
13 6 3.6196 -0.7380 -2.9673
14 7 3.8170 -2.0254 -2.7778
15 14 4.4344 0.1300 -4.4067
16 1 5.3144 1.2126 -3.8981
17 1 5.2460 -0.8456 -5.1779
18 1 3.3911 0.7130 -5.2881
19 1 -0.3633 -1.0277 -0.0005
20 1 -0.3633 0.5138 0.8899
21 1 -0.3633 0.5137 -0.8901
22 1 2.0032 0.9216 2.6903
23 1 2.4611 -2.7357 -1.0526
24 1 0.7354 -2.3244 -0.9068
25 1 1.5338 -2.2632 -2.4965
26 1 4.3854 -2.5236 -3.3858
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001559522666.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:46:34
Heat of formation + Delta-G solvation = 100.120819 kcal
Electronic energy + Delta-G solvation = -12415.725806 eV
Core-core repulsion = 10237.415216 eV
Total energy + Delta-G solvation = -2178.310590 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 213.063 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-40.29143 -36.07580 -32.77638 -30.64087 -28.64214 -26.43834 -25.73890 -23.74226
-21.43524 -19.97085 -17.56209 -16.59363 -15.31911 -15.05758 -14.85342 -13.80797
-13.70824 -12.85421 -12.31826 -11.99863 -11.75155 -11.53370 -11.13277 -10.76131
-10.67956 -10.57716 -10.29387 -9.94690 -9.80165 -9.39549 -9.31284 -8.97559
-8.49583 -6.76745 -5.67671 -3.14345 0.78550 1.66225 2.26694 2.96564
3.39963 3.45023 3.46222 4.47783 4.75349 5.32167 5.39571 5.51554
5.71004 5.85902 6.07900 6.16415 6.40186 6.59753 6.80529 7.06091
7.55883 7.81374 8.11008 8.40986 8.51025 9.25776 9.87738 10.37024
11.34349
Molecular weight = 213.06amu
Principal moments of inertia in cm(-1)
A = 0.043798 B = 0.009651 C = 0.009103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 639.148461 B = 2900.495255 C = 3075.042192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C 0.244 3.756
3 H 0.084 0.916
4 C 0.035 3.965
5 C -0.301 4.301
6 S 0.338 5.662
7 N -0.290 5.290
8 N -0.195 5.195
9 N -0.580 5.580
10 C 0.170 3.830
11 C -0.264 4.264
12 H 0.070 0.930
13 C 0.006 3.994
14 N -0.896 5.896
15 Si 0.907 3.093
16 H -0.284 1.284
17 H -0.290 1.290
18 H -0.283 1.283
19 H 0.053 0.947
20 H 0.045 0.955
21 H 0.064 0.936
22 H 0.188 0.812
23 H 0.046 0.954
24 H -0.003 1.003
25 H 0.037 0.963
26 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.574 4.453 10.255 12.080
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.215 4.215
2 C 0.129 3.871
3 H 0.102 0.898
4 C -0.112 4.112
5 C -0.458 4.458
6 S 0.474 5.526
7 N -0.268 5.268
8 N -0.064 5.064
9 N -0.299 5.299
10 C 0.026 3.974
11 C -0.394 4.394
12 H 0.088 0.912
13 C -0.194 4.194
14 N -0.539 5.539
15 Si 0.736 3.264
16 H -0.210 1.210
17 H -0.216 1.216
18 H -0.209 1.209
19 H 0.073 0.927
20 H 0.064 0.936
21 H 0.083 0.917
22 H 0.205 0.795
23 H 0.065 0.935
24 H 0.016 0.984
25 H 0.056 0.944
26 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -3.827 2.593 10.840 11.785
hybrid contribution 0.184 1.665 -1.531 2.270
sum -3.644 4.258 9.309 10.866
Atomic orbital electron populations
1.22249 0.96663 1.01818 1.00810 1.19169 0.92513 0.94359 0.81017
0.89826 1.24123 0.99383 0.89683 0.98032 1.28140 1.12126 1.07997
0.97570 1.81115 1.49452 0.97924 1.24157 1.79186 1.21667 1.25497
1.00496 1.71322 1.09960 1.11838 1.13257 1.44032 1.57104 1.10389
1.18380 1.20819 0.94939 0.83832 0.97821 1.19223 1.18159 0.90920
1.11094 0.91203 1.25078 0.97776 0.96101 1.00455 1.70132 1.39566
1.06888 1.37322 0.86318 0.79103 0.78471 0.82488 1.21008 1.21607
1.20941 0.92744 0.93565 0.91721 0.79469 0.93547 0.98413 0.94403
0.93622
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.66 9.16 37.16 0.34 -2.32 15
2 C 0.24 5.00 3.10 -69.07 -0.21 4.78 15
3 H 0.08 1.62 7.85 -51.93 -0.41 1.21 15
4 C 0.04 0.70 5.88 -83.67 -0.49 0.21 15
5 C -0.30 -4.62 11.36 29.70 0.34 -4.29 15
6 S 0.34 4.98 23.40 -107.50 -2.52 2.47 15
7 N -0.29 -5.82 12.54 60.35 0.76 -5.06 15
8 N -0.20 -4.39 9.31 32.45 0.30 -4.09 15
9 N -0.58 -14.79 2.78 -174.81 -0.49 -15.27 15
10 C 0.17 4.45 7.28 59.85 0.44 4.88 15
11 C -0.26 -7.28 9.62 -15.06 -0.14 -7.42 15
12 H 0.07 1.83 7.80 -52.48 -0.41 1.42 15
13 C 0.01 0.16 5.13 -17.43 -0.09 0.07 15
14 N -0.90 -26.84 10.54 55.49 0.59 -26.25 15
15 Si 0.91 21.95 29.57 -169.99 -5.03 16.92 15
16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15
17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15
18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15
19 H 0.05 0.98 6.66 -51.93 -0.35 0.64 15
20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15
21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15
22 H 0.19 2.13 8.06 -52.49 -0.42 1.71 15
23 H 0.05 1.35 6.68 -51.93 -0.35 1.00 15
24 H 0.00 -0.06 6.44 -51.93 -0.33 -0.40 15
25 H 0.04 1.05 7.19 -51.93 -0.37 0.67 15
26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 15
LS Contribution 236.26 15.07 3.56 3.56
Total: -1.00 -31.76 236.26 -5.27 -37.03
By element:
Atomic # 1 Polarization: -2.60 SS G_CDS: -2.62 Total: -5.22 kcal
Atomic # 6 Polarization: -4.26 SS G_CDS: 0.17 Total: -4.09 kcal
Atomic # 7 Polarization: -51.83 SS G_CDS: 1.16 Total: -50.68 kcal
Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal
Atomic # 16 Polarization: 4.98 SS G_CDS: -2.52 Total: 2.47 kcal
Total LS contribution 3.56 Total: 3.56 kcal
Total: -31.76 -5.27 -37.03 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001559522666.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 137.153 kcal
(2) G-P(sol) polarization free energy of solvation -31.761 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.391 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) 100.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds