Wall clock time and date at job start Sun Mar 29 2020 21:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.47054 * 2 1 4 4 C 1.50703 * 109.46768 * 119.99808 * 2 1 3 5 5 C 1.35344 * 123.76171 * 274.72815 * 4 2 1 6 6 S 1.72126 * 104.15034 * 179.90587 * 5 4 2 7 7 N 1.56518 * 95.88340 * 0.32187 * 6 5 4 8 8 N 1.27580 * 109.21881 * 359.80711 * 7 6 5 9 9 N 1.46503 * 109.47166 * 239.99631 * 2 1 3 10 10 C 1.46499 * 119.99974 * 300.00070 * 9 2 1 11 11 C 1.36932 * 119.99834 * 120.00217 * 9 2 1 12 12 H 1.08003 * 119.99802 * 339.04454 * 11 9 2 13 13 C 1.38809 * 120.00268 * 158.77108 * 11 9 2 14 14 N 1.31625 * 119.99566 * 348.08797 * 13 11 9 15 15 Si 1.86794 * 120.00309 * 168.08461 * 13 11 9 16 16 H 1.48498 * 109.47229 * 60.00317 * 15 13 11 17 17 H 1.48501 * 109.47020 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47236 * 299.99944 * 15 13 11 19 19 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 20 20 H 1.08990 * 109.47067 * 300.00264 * 1 2 3 21 21 H 1.09001 * 109.46699 * 60.00925 * 1 2 3 22 22 H 1.07994 * 127.92926 * 359.97438 * 5 4 2 23 23 H 1.09001 * 109.46787 * 264.81866 * 10 9 2 24 24 H 1.09000 * 109.47047 * 24.81666 * 10 9 2 25 25 H 1.08994 * 109.47190 * 144.82007 * 10 9 2 26 26 H 0.97002 * 119.99795 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1956 -0.1093 2.4321 6 16 2.7783 -1.3649 3.4551 7 7 2.7801 -2.4794 2.3561 8 7 2.3669 -1.9843 1.2553 9 7 2.0185 -0.6907 -1.1961 10 6 1.6645 -2.0933 -1.4279 11 6 2.8057 -0.0253 -2.0975 12 1 2.7968 1.0543 -2.1287 13 6 3.6196 -0.7380 -2.9673 14 7 3.8170 -2.0254 -2.7778 15 14 4.4344 0.1300 -4.4067 16 1 5.3144 1.2126 -3.8981 17 1 5.2460 -0.8456 -5.1779 18 1 3.3911 0.7130 -5.2881 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 2.0032 0.9216 2.6903 23 1 2.4611 -2.7357 -1.0526 24 1 0.7354 -2.3244 -0.9068 25 1 1.5338 -2.2632 -2.4965 26 1 4.3854 -2.5236 -3.3858 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001559522666.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:34 Heat of formation + Delta-G solvation = 100.120819 kcal Electronic energy + Delta-G solvation = -12415.725806 eV Core-core repulsion = 10237.415216 eV Total energy + Delta-G solvation = -2178.310590 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.29143 -36.07580 -32.77638 -30.64087 -28.64214 -26.43834 -25.73890 -23.74226 -21.43524 -19.97085 -17.56209 -16.59363 -15.31911 -15.05758 -14.85342 -13.80797 -13.70824 -12.85421 -12.31826 -11.99863 -11.75155 -11.53370 -11.13277 -10.76131 -10.67956 -10.57716 -10.29387 -9.94690 -9.80165 -9.39549 -9.31284 -8.97559 -8.49583 -6.76745 -5.67671 -3.14345 0.78550 1.66225 2.26694 2.96564 3.39963 3.45023 3.46222 4.47783 4.75349 5.32167 5.39571 5.51554 5.71004 5.85902 6.07900 6.16415 6.40186 6.59753 6.80529 7.06091 7.55883 7.81374 8.11008 8.40986 8.51025 9.25776 9.87738 10.37024 11.34349 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.043798 B = 0.009651 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.148461 B = 2900.495255 C = 3075.042192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.244 3.756 3 H 0.084 0.916 4 C 0.035 3.965 5 C -0.301 4.301 6 S 0.338 5.662 7 N -0.290 5.290 8 N -0.195 5.195 9 N -0.580 5.580 10 C 0.170 3.830 11 C -0.264 4.264 12 H 0.070 0.930 13 C 0.006 3.994 14 N -0.896 5.896 15 Si 0.907 3.093 16 H -0.284 1.284 17 H -0.290 1.290 18 H -0.283 1.283 19 H 0.053 0.947 20 H 0.045 0.955 21 H 0.064 0.936 22 H 0.188 0.812 23 H 0.046 0.954 24 H -0.003 1.003 25 H 0.037 0.963 26 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.574 4.453 10.255 12.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.129 3.871 3 H 0.102 0.898 4 C -0.112 4.112 5 C -0.458 4.458 6 S 0.474 5.526 7 N -0.268 5.268 8 N -0.064 5.064 9 N -0.299 5.299 10 C 0.026 3.974 11 C -0.394 4.394 12 H 0.088 0.912 13 C -0.194 4.194 14 N -0.539 5.539 15 Si 0.736 3.264 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.209 1.209 19 H 0.073 0.927 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.205 0.795 23 H 0.065 0.935 24 H 0.016 0.984 25 H 0.056 0.944 26 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.827 2.593 10.840 11.785 hybrid contribution 0.184 1.665 -1.531 2.270 sum -3.644 4.258 9.309 10.866 Atomic orbital electron populations 1.22249 0.96663 1.01818 1.00810 1.19169 0.92513 0.94359 0.81017 0.89826 1.24123 0.99383 0.89683 0.98032 1.28140 1.12126 1.07997 0.97570 1.81115 1.49452 0.97924 1.24157 1.79186 1.21667 1.25497 1.00496 1.71322 1.09960 1.11838 1.13257 1.44032 1.57104 1.10389 1.18380 1.20819 0.94939 0.83832 0.97821 1.19223 1.18159 0.90920 1.11094 0.91203 1.25078 0.97776 0.96101 1.00455 1.70132 1.39566 1.06888 1.37322 0.86318 0.79103 0.78471 0.82488 1.21008 1.21607 1.20941 0.92744 0.93565 0.91721 0.79469 0.93547 0.98413 0.94403 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.16 37.16 0.34 -2.32 15 2 C 0.24 5.00 3.10 -69.07 -0.21 4.78 15 3 H 0.08 1.62 7.85 -51.93 -0.41 1.21 15 4 C 0.04 0.70 5.88 -83.67 -0.49 0.21 15 5 C -0.30 -4.62 11.36 29.70 0.34 -4.29 15 6 S 0.34 4.98 23.40 -107.50 -2.52 2.47 15 7 N -0.29 -5.82 12.54 60.35 0.76 -5.06 15 8 N -0.20 -4.39 9.31 32.45 0.30 -4.09 15 9 N -0.58 -14.79 2.78 -174.81 -0.49 -15.27 15 10 C 0.17 4.45 7.28 59.85 0.44 4.88 15 11 C -0.26 -7.28 9.62 -15.06 -0.14 -7.42 15 12 H 0.07 1.83 7.80 -52.48 -0.41 1.42 15 13 C 0.01 0.16 5.13 -17.43 -0.09 0.07 15 14 N -0.90 -26.84 10.54 55.49 0.59 -26.25 15 15 Si 0.91 21.95 29.57 -169.99 -5.03 16.92 15 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 15 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 15 19 H 0.05 0.98 6.66 -51.93 -0.35 0.64 15 20 H 0.05 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.06 1.09 8.14 -51.93 -0.42 0.67 15 22 H 0.19 2.13 8.06 -52.49 -0.42 1.71 15 23 H 0.05 1.35 6.68 -51.93 -0.35 1.00 15 24 H 0.00 -0.06 6.44 -51.93 -0.33 -0.40 15 25 H 0.04 1.05 7.19 -51.93 -0.37 0.67 15 26 H 0.25 7.37 8.31 -40.82 -0.34 7.03 15 LS Contribution 236.26 15.07 3.56 3.56 Total: -1.00 -31.76 236.26 -5.27 -37.03 By element: Atomic # 1 Polarization: -2.60 SS G_CDS: -2.62 Total: -5.22 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 0.17 Total: -4.09 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 1.16 Total: -50.68 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.03 Total: 16.92 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -2.52 Total: 2.47 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.76 -5.27 -37.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522666.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.153 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds