Wall clock time and date at job start Sun Mar 29 2020 21:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.08994 * 109.47054 * 2 1 4 4 C 1.50703 * 109.46768 * 119.99808 * 2 1 3 5 5 C 1.35344 * 123.76171 * 274.72815 * 4 2 1 6 6 S 1.72126 * 104.15034 * 179.90587 * 5 4 2 7 7 N 1.56518 * 95.88340 * 0.32187 * 6 5 4 8 8 N 1.27580 * 109.21881 * 359.80711 * 7 6 5 9 9 N 1.46503 * 109.47166 * 239.99631 * 2 1 3 10 10 C 1.46499 * 119.99974 * 300.00070 * 9 2 1 11 11 C 1.36932 * 119.99834 * 120.00217 * 9 2 1 12 12 H 1.08003 * 119.99802 * 339.04454 * 11 9 2 13 13 C 1.38809 * 120.00268 * 158.77108 * 11 9 2 14 14 N 1.31625 * 119.99566 * 348.08797 * 13 11 9 15 15 Si 1.86794 * 120.00309 * 168.08461 * 13 11 9 16 16 H 1.48498 * 109.47229 * 60.00317 * 15 13 11 17 17 H 1.48501 * 109.47020 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47236 * 299.99944 * 15 13 11 19 19 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 20 20 H 1.08990 * 109.47067 * 300.00264 * 1 2 3 21 21 H 1.09001 * 109.46699 * 60.00925 * 1 2 3 22 22 H 1.07994 * 127.92926 * 359.97438 * 5 4 2 23 23 H 1.09001 * 109.46787 * 264.81866 * 10 9 2 24 24 H 1.09000 * 109.47047 * 24.81666 * 10 9 2 25 25 H 1.08994 * 109.47190 * 144.82007 * 10 9 2 26 26 H 0.97002 * 119.99795 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1956 -0.1093 2.4321 6 16 2.7783 -1.3649 3.4551 7 7 2.7801 -2.4794 2.3561 8 7 2.3669 -1.9843 1.2553 9 7 2.0185 -0.6907 -1.1961 10 6 1.6645 -2.0933 -1.4279 11 6 2.8057 -0.0253 -2.0975 12 1 2.7968 1.0543 -2.1287 13 6 3.6196 -0.7380 -2.9673 14 7 3.8170 -2.0254 -2.7778 15 14 4.4344 0.1300 -4.4067 16 1 5.3144 1.2126 -3.8981 17 1 5.2460 -0.8456 -5.1779 18 1 3.3911 0.7130 -5.2881 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 2.0032 0.9216 2.6903 23 1 2.4611 -2.7357 -1.0526 24 1 0.7354 -2.3244 -0.9068 25 1 1.5338 -2.2632 -2.4965 26 1 4.3854 -2.5236 -3.3858 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559522666.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:33 Heat of formation + Delta-G solvation = 77.899926 kcal Electronic energy + Delta-G solvation = -12416.689376 eV Core-core repulsion = 10237.415216 eV Total energy + Delta-G solvation = -2179.274160 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.73150 -37.85467 -34.55968 -32.36489 -30.25458 -28.16408 -27.50209 -25.48501 -23.12692 -21.43038 -19.18612 -18.47704 -16.79747 -16.68780 -16.46152 -15.58445 -15.27632 -14.63907 -14.08377 -13.54238 -13.31815 -12.94946 -12.81617 -12.55895 -12.53862 -12.28042 -12.22023 -11.75918 -11.74501 -10.80549 -10.63525 -10.57425 -10.35680 -8.80102 -7.76743 -5.26685 -0.52891 0.41940 0.95401 1.47208 1.48593 1.52931 1.57303 2.52334 3.27561 3.37366 3.76990 4.11446 4.31770 4.46024 4.59034 4.76605 4.89997 5.10545 5.15340 5.34878 5.51391 5.67626 5.97293 6.34047 7.10717 7.18096 7.89789 8.35432 9.24931 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.043798 B = 0.009651 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.148461 B = 2900.495255 C = 3075.042192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.237 3.763 3 H 0.097 0.903 4 C 0.002 3.998 5 C -0.279 4.279 6 S 0.451 5.549 7 N -0.350 5.350 8 N -0.253 5.253 9 N -0.599 5.599 10 C 0.198 3.802 11 C -0.267 4.267 12 H 0.083 0.917 13 C -0.058 4.058 14 N -0.938 5.938 15 Si 0.973 3.027 16 H -0.274 1.274 17 H -0.300 1.300 18 H -0.274 1.274 19 H 0.037 0.963 20 H 0.085 0.915 21 H 0.063 0.937 22 H 0.235 0.765 23 H 0.010 0.990 24 H 0.014 0.986 25 H 0.006 0.994 26 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 6.921 12.273 14.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.125 3.875 3 H 0.114 0.886 4 C -0.146 4.146 5 C -0.436 4.436 6 S 0.586 5.414 7 N -0.329 5.329 8 N -0.119 5.119 9 N -0.320 5.320 10 C 0.053 3.947 11 C -0.397 4.397 12 H 0.101 0.899 13 C -0.253 4.253 14 N -0.584 5.584 15 Si 0.801 3.199 16 H -0.200 1.200 17 H -0.227 1.227 18 H -0.200 1.200 19 H 0.056 0.944 20 H 0.104 0.896 21 H 0.082 0.918 22 H 0.252 0.748 23 H 0.029 0.971 24 H 0.032 0.968 25 H 0.025 0.975 26 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.352 5.086 12.887 14.522 hybrid contribution 0.286 0.990 -1.837 2.106 sum -4.066 6.076 11.051 13.250 Atomic orbital electron populations 1.22116 0.94091 1.01315 1.02752 1.19392 0.94162 0.94284 0.79660 0.88556 1.23875 1.01525 0.89805 0.99437 1.28612 1.08852 1.09996 0.96176 1.80635 1.45440 0.94920 1.20438 1.78742 1.23988 1.28605 1.01562 1.71346 1.11930 1.13583 1.15019 1.44142 1.57359 1.09868 1.20665 1.20318 0.94291 0.84538 0.95514 1.19678 1.17104 0.91622 1.11329 0.89944 1.25901 0.99207 0.96762 1.03381 1.70346 1.41135 1.08553 1.38351 0.85257 0.78130 0.77195 0.79314 1.19950 1.22681 1.19999 0.94407 0.89576 0.91768 0.74828 0.97128 0.96781 0.97525 0.94641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.57 9.16 71.99 0.66 -3.91 15 2 C 0.24 9.31 3.10 44.25 0.14 9.45 15 3 H 0.10 3.46 7.85 -2.39 -0.02 3.44 15 4 C 0.00 0.06 5.88 41.91 0.25 0.31 15 5 C -0.28 -7.35 11.36 67.15 0.76 -6.59 15 6 S 0.45 11.68 23.40 -56.49 -1.32 10.36 15 7 N -0.35 -13.82 12.54 37.02 0.46 -13.36 15 8 N -0.25 -11.34 9.31 -51.25 -0.48 -11.82 15 9 N -0.60 -30.82 2.78 -706.97 -1.97 -32.79 15 10 C 0.20 10.82 7.28 127.77 0.93 11.75 15 11 C -0.27 -14.77 9.62 84.03 0.81 -13.96 15 12 H 0.08 4.23 7.80 -2.91 -0.02 4.20 15 13 C -0.06 -3.31 5.13 84.86 0.44 -2.88 15 14 N -0.94 -58.62 10.54 21.65 0.23 -58.39 15 15 Si 0.97 45.89 29.57 68.60 2.03 47.92 15 16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15 17 H -0.30 -14.49 7.11 99.48 0.71 -13.78 15 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15 19 H 0.04 1.32 6.66 -2.39 -0.02 1.30 15 20 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.24 3.75 8.06 -2.91 -0.02 3.72 15 23 H 0.01 0.64 6.68 -2.39 -0.02 0.63 15 24 H 0.01 0.68 6.44 -2.39 -0.02 0.67 15 25 H 0.01 0.36 7.19 -2.39 -0.02 0.34 15 26 H 0.24 14.94 8.31 -92.71 -0.77 14.17 15 Total: -1.00 -72.58 236.26 4.12 -68.46 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: 1.18 Total: -4.54 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 3.98 Total: -5.83 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -1.75 Total: -116.36 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Atomic # 16 Polarization: 11.68 SS G_CDS: -1.32 Total: 10.36 kcal Total: -72.58 4.12 -68.46 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522666.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.359 kcal (2) G-P(sol) polarization free energy of solvation -72.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds