Wall clock time and date at job start Sun Mar 29 2020 21:46:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53010 * 1
3 3 H 1.08994 * 109.47054 * 2 1
4 4 C 1.50703 * 109.46768 * 119.99808 * 2 1 3
5 5 C 1.35344 * 123.76171 * 274.72815 * 4 2 1
6 6 S 1.72126 * 104.15034 * 179.90587 * 5 4 2
7 7 N 1.56518 * 95.88340 * 0.32187 * 6 5 4
8 8 N 1.27580 * 109.21881 * 359.80711 * 7 6 5
9 9 N 1.46503 * 109.47166 * 239.99631 * 2 1 3
10 10 C 1.46499 * 119.99974 * 300.00070 * 9 2 1
11 11 C 1.36932 * 119.99834 * 120.00217 * 9 2 1
12 12 H 1.08003 * 119.99802 * 339.04454 * 11 9 2
13 13 C 1.38809 * 120.00268 * 158.77108 * 11 9 2
14 14 N 1.31625 * 119.99566 * 348.08797 * 13 11 9
15 15 Si 1.86794 * 120.00309 * 168.08461 * 13 11 9
16 16 H 1.48498 * 109.47229 * 60.00317 * 15 13 11
17 17 H 1.48501 * 109.47020 * 179.97438 * 15 13 11
18 18 H 1.48499 * 109.47236 * 299.99944 * 15 13 11
19 19 H 1.09004 * 109.46944 * 179.97438 * 1 2 3
20 20 H 1.08990 * 109.47067 * 300.00264 * 1 2 3
21 21 H 1.09001 * 109.46699 * 60.00925 * 1 2 3
22 22 H 1.07994 * 127.92926 * 359.97438 * 5 4 2
23 23 H 1.09001 * 109.46787 * 264.81866 * 10 9 2
24 24 H 1.09000 * 109.47047 * 24.81666 * 10 9 2
25 25 H 1.08994 * 109.47190 * 144.82007 * 10 9 2
26 26 H 0.97002 * 119.99795 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7104 1.2305
5 6 2.1956 -0.1093 2.4321
6 16 2.7783 -1.3649 3.4551
7 7 2.7801 -2.4794 2.3561
8 7 2.3669 -1.9843 1.2553
9 7 2.0185 -0.6907 -1.1961
10 6 1.6645 -2.0933 -1.4279
11 6 2.8057 -0.0253 -2.0975
12 1 2.7968 1.0543 -2.1287
13 6 3.6196 -0.7380 -2.9673
14 7 3.8170 -2.0254 -2.7778
15 14 4.4344 0.1300 -4.4067
16 1 5.3144 1.2126 -3.8981
17 1 5.2460 -0.8456 -5.1779
18 1 3.3911 0.7130 -5.2881
19 1 -0.3633 -1.0277 -0.0005
20 1 -0.3633 0.5138 0.8899
21 1 -0.3633 0.5137 -0.8901
22 1 2.0032 0.9216 2.6903
23 1 2.4611 -2.7357 -1.0526
24 1 0.7354 -2.3244 -0.9068
25 1 1.5338 -2.2632 -2.4965
26 1 4.3854 -2.5236 -3.3858
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001559522666.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:46:33
Heat of formation + Delta-G solvation = 77.899926 kcal
Electronic energy + Delta-G solvation = -12416.689376 eV
Core-core repulsion = 10237.415216 eV
Total energy + Delta-G solvation = -2179.274160 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 213.063 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-41.73150 -37.85467 -34.55968 -32.36489 -30.25458 -28.16408 -27.50209 -25.48501
-23.12692 -21.43038 -19.18612 -18.47704 -16.79747 -16.68780 -16.46152 -15.58445
-15.27632 -14.63907 -14.08377 -13.54238 -13.31815 -12.94946 -12.81617 -12.55895
-12.53862 -12.28042 -12.22023 -11.75918 -11.74501 -10.80549 -10.63525 -10.57425
-10.35680 -8.80102 -7.76743 -5.26685 -0.52891 0.41940 0.95401 1.47208
1.48593 1.52931 1.57303 2.52334 3.27561 3.37366 3.76990 4.11446
4.31770 4.46024 4.59034 4.76605 4.89997 5.10545 5.15340 5.34878
5.51391 5.67626 5.97293 6.34047 7.10717 7.18096 7.89789 8.35432
9.24931
Molecular weight = 213.06amu
Principal moments of inertia in cm(-1)
A = 0.043798 B = 0.009651 C = 0.009103
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 639.148461 B = 2900.495255 C = 3075.042192
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.237 3.763
3 H 0.097 0.903
4 C 0.002 3.998
5 C -0.279 4.279
6 S 0.451 5.549
7 N -0.350 5.350
8 N -0.253 5.253
9 N -0.599 5.599
10 C 0.198 3.802
11 C -0.267 4.267
12 H 0.083 0.917
13 C -0.058 4.058
14 N -0.938 5.938
15 Si 0.973 3.027
16 H -0.274 1.274
17 H -0.300 1.300
18 H -0.274 1.274
19 H 0.037 0.963
20 H 0.085 0.915
21 H 0.063 0.937
22 H 0.235 0.765
23 H 0.010 0.990
24 H 0.014 0.986
25 H 0.006 0.994
26 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.073 6.921 12.273 14.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.125 3.875
3 H 0.114 0.886
4 C -0.146 4.146
5 C -0.436 4.436
6 S 0.586 5.414
7 N -0.329 5.329
8 N -0.119 5.119
9 N -0.320 5.320
10 C 0.053 3.947
11 C -0.397 4.397
12 H 0.101 0.899
13 C -0.253 4.253
14 N -0.584 5.584
15 Si 0.801 3.199
16 H -0.200 1.200
17 H -0.227 1.227
18 H -0.200 1.200
19 H 0.056 0.944
20 H 0.104 0.896
21 H 0.082 0.918
22 H 0.252 0.748
23 H 0.029 0.971
24 H 0.032 0.968
25 H 0.025 0.975
26 H 0.054 0.946
Dipole moment (debyes) X Y Z Total
from point charges -4.352 5.086 12.887 14.522
hybrid contribution 0.286 0.990 -1.837 2.106
sum -4.066 6.076 11.051 13.250
Atomic orbital electron populations
1.22116 0.94091 1.01315 1.02752 1.19392 0.94162 0.94284 0.79660
0.88556 1.23875 1.01525 0.89805 0.99437 1.28612 1.08852 1.09996
0.96176 1.80635 1.45440 0.94920 1.20438 1.78742 1.23988 1.28605
1.01562 1.71346 1.11930 1.13583 1.15019 1.44142 1.57359 1.09868
1.20665 1.20318 0.94291 0.84538 0.95514 1.19678 1.17104 0.91622
1.11329 0.89944 1.25901 0.99207 0.96762 1.03381 1.70346 1.41135
1.08553 1.38351 0.85257 0.78130 0.77195 0.79314 1.19950 1.22681
1.19999 0.94407 0.89576 0.91768 0.74828 0.97128 0.96781 0.97525
0.94641
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -4.57 9.16 71.99 0.66 -3.91 15
2 C 0.24 9.31 3.10 44.25 0.14 9.45 15
3 H 0.10 3.46 7.85 -2.39 -0.02 3.44 15
4 C 0.00 0.06 5.88 41.91 0.25 0.31 15
5 C -0.28 -7.35 11.36 67.15 0.76 -6.59 15
6 S 0.45 11.68 23.40 -56.49 -1.32 10.36 15
7 N -0.35 -13.82 12.54 37.02 0.46 -13.36 15
8 N -0.25 -11.34 9.31 -51.25 -0.48 -11.82 15
9 N -0.60 -30.82 2.78 -706.97 -1.97 -32.79 15
10 C 0.20 10.82 7.28 127.77 0.93 11.75 15
11 C -0.27 -14.77 9.62 84.03 0.81 -13.96 15
12 H 0.08 4.23 7.80 -2.91 -0.02 4.20 15
13 C -0.06 -3.31 5.13 84.86 0.44 -2.88 15
14 N -0.94 -58.62 10.54 21.65 0.23 -58.39 15
15 Si 0.97 45.89 29.57 68.60 2.03 47.92 15
16 H -0.27 -12.31 7.11 99.48 0.71 -11.60 15
17 H -0.30 -14.49 7.11 99.48 0.71 -13.78 15
18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 15
19 H 0.04 1.32 6.66 -2.39 -0.02 1.30 15
20 H 0.09 2.04 8.14 -2.39 -0.02 2.02 15
21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 15
22 H 0.24 3.75 8.06 -2.91 -0.02 3.72 15
23 H 0.01 0.64 6.68 -2.39 -0.02 0.63 15
24 H 0.01 0.68 6.44 -2.39 -0.02 0.67 15
25 H 0.01 0.36 7.19 -2.39 -0.02 0.34 15
26 H 0.24 14.94 8.31 -92.71 -0.77 14.17 15
Total: -1.00 -72.58 236.26 4.12 -68.46
By element:
Atomic # 1 Polarization: -5.72 SS G_CDS: 1.18 Total: -4.54 kcal
Atomic # 6 Polarization: -9.81 SS G_CDS: 3.98 Total: -5.83 kcal
Atomic # 7 Polarization: -114.61 SS G_CDS: -1.75 Total: -116.36 kcal
Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal
Atomic # 16 Polarization: 11.68 SS G_CDS: -1.32 Total: 10.36 kcal
Total: -72.58 4.12 -68.46 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001559522666.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 146.359 kcal
(2) G-P(sol) polarization free energy of solvation -72.578 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.119 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.459 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds