Wall clock time and date at job start Sun Mar 29 2020 21:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 C 1.50702 * 109.46941 * 240.00123 * 2 1 3 5 5 C 1.35342 * 123.76785 * 84.73231 * 4 2 1 6 6 S 1.72113 * 104.15482 * 179.90074 * 5 4 2 7 7 N 1.56513 * 95.88047 * 0.32243 * 6 5 4 8 8 N 1.27564 * 109.22612 * 359.80520 * 7 6 5 9 9 N 1.46497 * 109.46509 * 120.00300 * 2 1 3 10 10 C 1.46496 * 120.00299 * 60.00046 * 9 2 1 11 11 C 1.36943 * 119.99427 * 239.99587 * 9 2 1 12 12 H 1.07993 * 120.00076 * 339.37791 * 11 9 2 13 13 C 1.38810 * 119.99631 * 159.37935 * 11 9 2 14 14 N 1.31619 * 120.00055 * 156.23473 * 13 11 9 15 15 Si 1.86805 * 120.00130 * 336.23678 * 13 11 9 16 16 H 1.48508 * 109.46911 * 86.27000 * 15 13 11 17 17 H 1.48494 * 109.47161 * 206.26944 * 15 13 11 18 18 H 1.48497 * 109.47309 * 326.27332 * 15 13 11 19 19 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46828 * 300.00294 * 1 2 3 21 21 H 1.08999 * 109.46836 * 59.99602 * 1 2 3 22 22 H 1.08009 * 127.91946 * 359.97438 * 5 4 2 23 23 H 1.08996 * 109.47052 * 264.62080 * 10 9 2 24 24 H 1.09005 * 109.47258 * 144.61920 * 10 9 2 25 25 H 1.09003 * 109.47297 * 24.62282 * 10 9 2 26 26 H 0.97005 * 120.00220 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 6 2.1857 -0.1120 -2.4347 6 16 2.7788 -1.3649 -3.4549 7 7 2.7792 -2.4796 -2.3562 8 7 2.3660 -1.9846 -1.2555 9 7 2.0182 -0.6907 1.1961 10 6 1.6643 -2.0932 1.4279 11 6 2.8056 -0.0252 2.0976 12 1 3.3387 0.8642 1.7957 13 6 2.9184 -0.4938 3.3993 14 7 3.9750 -0.1848 4.1207 15 14 1.5706 -1.5629 4.1273 16 1 1.8206 -2.9835 3.7740 17 1 1.5644 -1.4140 5.6047 18 1 0.2554 -1.1414 3.5817 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 1.9835 0.9165 -2.6954 23 1 0.7916 -2.1449 2.0789 24 1 2.5017 -2.6058 1.9014 25 1 1.4363 -2.5726 0.4759 26 1 4.0537 -0.5120 5.0305 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001559522667.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:35 Heat of formation + Delta-G solvation = 82.568515 kcal Electronic energy + Delta-G solvation = -12429.350650 eV Core-core repulsion = 10250.278935 eV Total energy + Delta-G solvation = -2179.071715 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.063 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.85935 -38.13380 -34.60282 -32.95001 -30.68335 -28.33249 -27.62489 -25.71877 -23.22167 -21.55325 -19.16687 -18.72340 -17.39022 -16.62779 -16.51894 -15.96907 -15.18838 -15.10799 -14.25080 -13.93798 -13.76666 -13.31077 -13.17506 -12.84560 -12.48789 -12.20367 -12.11796 -11.97090 -11.50622 -10.90482 -10.70226 -10.62707 -10.42347 -9.09669 -8.17497 -5.44222 -0.58552 0.35356 0.88187 1.34938 1.37941 1.40705 1.50487 2.44380 3.00357 3.12245 3.48499 3.99796 4.23540 4.41340 4.44076 4.64822 4.69757 4.75839 4.92986 5.08226 5.18243 5.38495 5.81016 6.09924 6.85511 7.01261 7.62875 7.98351 9.01916 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.050337 B = 0.009669 C = 0.009492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.122867 B = 2895.278115 C = 2949.020512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.242 3.758 3 H 0.100 0.900 4 C 0.005 3.995 5 C -0.278 4.278 6 S 0.475 5.525 7 N -0.346 5.346 8 N -0.263 5.263 9 N -0.606 5.606 10 C 0.108 3.892 11 C -0.252 4.252 12 H 0.063 0.937 13 C -0.031 4.031 14 N -0.953 5.953 15 Si 0.949 3.051 16 H -0.284 1.284 17 H -0.312 1.312 18 H -0.266 1.266 19 H 0.043 0.957 20 H 0.058 0.942 21 H 0.091 0.909 22 H 0.235 0.765 23 H 0.006 0.994 24 H 0.022 0.978 25 H 0.082 0.918 26 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 1.165 -16.991 18.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.132 3.868 3 H 0.117 0.883 4 C -0.143 4.143 5 C -0.434 4.434 6 S 0.609 5.391 7 N -0.325 5.325 8 N -0.129 5.129 9 N -0.328 5.328 10 C -0.036 4.036 11 C -0.381 4.381 12 H 0.081 0.919 13 C -0.226 4.226 14 N -0.599 5.599 15 Si 0.780 3.220 16 H -0.211 1.211 17 H -0.242 1.242 18 H -0.192 1.192 19 H 0.062 0.938 20 H 0.077 0.923 21 H 0.109 0.891 22 H 0.252 0.748 23 H 0.023 0.977 24 H 0.041 0.959 25 H 0.100 0.900 26 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.425 -0.566 -17.584 18.730 hybrid contribution -0.658 0.608 1.877 2.080 sum -7.083 0.042 -15.707 17.230 Atomic orbital electron populations 1.22186 0.93938 1.01731 1.02957 1.19210 0.93893 0.94193 0.79548 0.88251 1.23467 1.01739 0.89921 0.99128 1.28557 1.08412 1.10258 0.96209 1.80757 1.44220 0.94241 1.19842 1.78650 1.23585 1.28561 1.01664 1.71229 1.12935 1.13163 1.15537 1.44189 1.58536 1.07669 1.22401 1.21408 0.96516 0.85187 1.00525 1.18938 1.18944 1.09762 0.90453 0.91880 1.25628 0.99100 1.00807 0.97070 1.70000 1.28073 1.50922 1.10950 0.86002 0.81756 0.79032 0.75240 1.21053 1.24153 1.19190 0.93827 0.92317 0.89067 0.74842 0.97653 0.95930 0.89971 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.18 71.98 0.66 -3.83 15 2 C 0.24 8.91 3.10 44.25 0.14 9.05 15 3 H 0.10 3.47 7.85 -2.39 -0.02 3.45 15 4 C 0.00 0.16 5.83 41.90 0.24 0.40 15 5 C -0.28 -6.23 11.36 67.15 0.76 -5.47 15 6 S 0.48 10.15 23.40 -56.49 -1.32 8.83 15 7 N -0.35 -11.57 12.54 37.02 0.46 -11.11 15 8 N -0.26 -10.10 8.65 -51.25 -0.44 -10.54 15 9 N -0.61 -29.31 2.62 -706.98 -1.85 -31.16 15 10 C 0.11 5.17 6.98 127.77 0.89 6.06 15 11 C -0.25 -14.43 10.00 84.03 0.84 -13.59 15 12 H 0.06 3.83 8.00 -2.91 -0.02 3.80 15 13 C -0.03 -1.87 5.23 84.86 0.44 -1.43 15 14 N -0.95 -61.18 13.97 21.65 0.30 -60.88 15 15 Si 0.95 49.01 23.94 68.60 1.64 50.65 15 16 H -0.28 -14.34 6.51 99.48 0.65 -13.70 15 17 H -0.31 -16.20 7.11 99.48 0.71 -15.49 15 18 H -0.27 -13.07 6.72 99.48 0.67 -12.40 15 19 H 0.04 1.38 7.67 -2.39 -0.02 1.36 15 20 H 0.06 1.87 8.14 -2.39 -0.02 1.85 15 21 H 0.09 1.98 8.14 -2.39 -0.02 1.96 15 22 H 0.24 3.05 8.06 -2.91 -0.02 3.02 15 23 H 0.01 0.27 4.84 -2.39 -0.01 0.26 15 24 H 0.02 1.17 6.43 -2.38 -0.02 1.16 15 25 H 0.08 3.61 5.62 -2.39 -0.01 3.60 15 26 H 0.26 15.97 8.31 -92.70 -0.77 15.20 15 Total: -1.00 -72.79 230.18 3.86 -68.92 By element: Atomic # 1 Polarization: -7.00 SS G_CDS: 1.09 Total: -5.91 kcal Atomic # 6 Polarization: -12.79 SS G_CDS: 3.98 Total: -8.81 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -1.53 Total: -113.69 kcal Atomic # 14 Polarization: 49.01 SS G_CDS: 1.64 Total: 50.65 kcal Atomic # 16 Polarization: 10.15 SS G_CDS: -1.32 Total: 8.83 kcal Total: -72.79 3.86 -68.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001559522667.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.490 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds