Wall clock time and date at job start Sun Mar 29 2020 21:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.46968 * 2 1 4 4 C 1.50700 * 109.47168 * 119.99693 * 2 1 3 5 5 H 1.08005 * 119.99827 * 120.00717 * 4 2 1 6 6 C 1.37872 * 120.00436 * 300.00074 * 4 2 1 7 7 N 1.31511 * 120.00382 * 179.97438 * 6 4 2 8 8 Si 1.86802 * 119.99716 * 0.02562 * 6 4 2 9 9 H 1.48508 * 109.47061 * 89.99696 * 8 6 4 10 10 H 1.48504 * 109.47028 * 209.99284 * 8 6 4 11 11 H 1.48497 * 109.47233 * 329.99803 * 8 6 4 12 12 N 1.46900 * 109.47447 * 240.00271 * 2 1 3 13 13 C 1.46901 * 110.99890 * 84.99592 * 12 2 1 14 14 C 1.53000 * 109.46769 * 204.99887 * 13 12 2 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 13 17 17 N 1.46906 * 109.46897 * 60.00033 * 16 15 14 18 18 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 19 19 C 1.52997 * 109.47452 * 59.99536 * 18 16 15 20 20 H 1.09007 * 109.46968 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47366 * 299.99879 * 1 2 3 22 22 H 1.09001 * 109.46972 * 60.00326 * 1 2 3 23 23 H 0.97003 * 120.00523 * 180.02562 * 7 6 4 24 24 H 1.00902 * 110.99732 * 321.03891 * 12 2 1 25 25 H 1.08992 * 109.47407 * 325.00184 * 13 12 2 26 26 H 1.09002 * 109.47398 * 300.00295 * 14 13 12 27 27 H 1.09001 * 109.47194 * 60.00475 * 14 13 12 28 28 H 1.08996 * 109.47853 * 180.02562 * 15 14 13 29 29 H 1.09002 * 109.47153 * 300.00319 * 15 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.00900 * 110.99744 * 60.00323 * 17 16 15 32 32 H 1.00897 * 111.00162 * 183.95339 * 17 16 15 33 33 H 1.09002 * 109.46935 * 299.99411 * 18 16 15 34 34 H 1.09001 * 109.46812 * 179.97438 * 18 16 15 35 35 H 1.08993 * 109.47194 * 179.97438 * 19 18 16 36 36 H 1.09002 * 109.46695 * 59.99734 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6247 1.2790 2.6541 9 1 -0.8029 0.8726 2.6998 10 1 0.9758 1.9951 3.9069 11 1 0.8469 2.1765 1.4920 12 7 2.0197 -0.6924 -1.1994 13 6 2.0824 0.2227 -2.3469 14 6 1.9771 -0.5796 -3.6454 15 6 2.0431 0.3734 -4.8405 16 6 3.3719 1.1314 -4.8157 17 7 4.4833 0.1737 -4.8911 18 6 3.4773 1.9336 -3.5171 19 6 3.4113 0.9806 -2.3220 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.9027 -0.5284 4.4376 24 1 1.4497 -1.4979 -1.4100 25 1 1.2576 0.9330 -2.2907 26 1 2.8020 -1.2899 -3.7016 27 1 1.0306 -1.1199 -3.6629 28 1 1.9676 -0.1980 -5.7656 29 1 1.2184 1.0840 -4.7845 30 1 3.4187 1.8106 -5.6668 31 1 4.4361 -0.3688 -5.7406 32 1 5.3722 0.6443 -4.8117 33 1 2.6526 2.6442 -3.4611 34 1 4.4242 2.4732 -3.4993 35 1 3.4869 1.5521 -1.3970 36 1 4.2360 0.2700 -2.3781 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914123.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:38 Heat of formation + Delta-G solvation = -34.627322 kcal Electronic energy + Delta-G solvation = -14881.701614 eV Core-core repulsion = 12591.887135 eV Total energy + Delta-G solvation = -2289.814479 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.07456 -37.42987 -34.70495 -33.08130 -31.64632 -30.50354 -27.55746 -27.08491 -23.71213 -22.65882 -21.50721 -20.02375 -18.74383 -16.94129 -16.74534 -16.58448 -15.97644 -15.55876 -15.38230 -14.71000 -14.30026 -14.17403 -13.94527 -13.36057 -13.21192 -12.96861 -12.81656 -12.68577 -12.35927 -12.00685 -11.92037 -11.83237 -11.45317 -11.30478 -10.99245 -10.81308 -10.74258 -9.35760 -8.94104 -8.26616 -6.28378 1.27454 1.33592 1.43854 2.31841 3.07235 3.44053 3.80768 3.84128 3.97164 4.27086 4.37701 4.46369 4.49621 4.54047 4.59332 4.68029 4.69997 4.74928 4.87926 4.94765 5.04277 5.14352 5.22487 5.36937 5.42426 5.44836 5.51045 5.64649 5.73056 6.12984 6.42399 6.76658 6.77318 6.78090 6.87031 7.36815 8.91116 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.049381 B = 0.007692 C = 0.007647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.888366 B = 3639.213699 C = 3660.712396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.190 3.810 3 H 0.022 0.978 4 C -0.503 4.503 5 H 0.034 0.966 6 C 0.007 3.993 7 N -0.952 5.952 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.683 5.683 13 C 0.090 3.910 14 C -0.103 4.103 15 C -0.105 4.105 16 C 0.097 3.903 17 N -0.850 5.850 18 C -0.109 4.109 19 C -0.094 4.094 20 H 0.055 0.945 21 H 0.035 0.965 22 H 0.057 0.943 23 H 0.265 0.735 24 H 0.333 0.667 25 H 0.025 0.975 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.347 0.653 32 H 0.345 0.655 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.024 0.976 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 6.313 -19.408 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.080 3.920 3 H 0.040 0.960 4 C -0.541 4.541 5 H 0.052 0.948 6 C -0.189 4.189 7 N -0.593 5.593 8 Si 0.780 3.220 9 H -0.192 1.192 10 H -0.225 1.225 11 H -0.178 1.178 12 N -0.313 5.313 13 C -0.020 4.020 14 C -0.141 4.141 15 C -0.143 4.143 16 C -0.014 4.014 17 N -0.382 5.382 18 C -0.148 4.148 19 C -0.132 4.132 20 H 0.074 0.926 21 H 0.053 0.947 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.152 0.848 25 H 0.043 0.957 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.043 0.957 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.610 6.075 -18.411 19.397 hybrid contribution -0.921 0.945 -0.062 1.321 sum -1.531 7.020 -18.472 19.820 Atomic orbital electron populations 1.22718 0.99650 1.01360 0.99742 1.19381 0.89759 0.93847 0.89014 0.95979 1.21320 1.30070 1.12426 0.90320 0.94797 1.25816 0.97646 1.00059 0.95375 1.70050 1.48124 1.42639 0.98493 0.85807 0.79111 0.80000 0.77116 1.19179 1.22463 1.17797 1.60464 1.57926 1.09528 1.03346 1.21530 0.96201 0.93886 0.90334 1.21488 1.01426 0.98247 0.92912 1.21526 0.96614 0.98314 0.97887 1.21253 0.91708 0.92620 0.95859 1.58607 1.05287 1.29044 1.45289 1.21580 1.01886 0.97102 0.94187 1.21315 0.97882 0.97751 0.96285 0.92557 0.94670 0.92402 0.92625 0.84850 0.95724 0.91087 0.92661 0.90511 0.91427 0.93330 0.83954 0.84210 0.91649 0.91500 0.95687 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.49 8.62 71.98 0.62 -6.87 16 2 C 0.19 9.20 1.98 44.17 0.09 9.29 16 3 H 0.02 1.13 6.17 -2.38 -0.01 1.11 16 4 C -0.50 -30.06 9.42 25.60 0.24 -29.82 16 5 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 6 C 0.01 0.45 5.45 84.65 0.46 0.91 16 7 N -0.95 -61.46 13.96 21.45 0.30 -61.16 16 8 Si 0.95 46.41 24.37 68.60 1.67 48.08 16 9 H -0.27 -12.22 6.87 99.48 0.68 -11.54 16 10 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 11 H -0.25 -11.59 6.53 99.48 0.65 -10.94 16 12 N -0.68 -28.82 6.04 -473.31 -2.86 -31.68 16 13 C 0.09 3.04 2.31 44.92 0.10 3.15 16 14 C -0.10 -2.74 5.04 30.59 0.15 -2.59 16 15 C -0.11 -2.11 5.61 30.59 0.17 -1.93 16 16 C 0.10 1.87 3.57 44.92 0.16 2.03 16 17 N -0.85 -15.96 7.72 -168.66 -1.30 -17.26 16 18 C -0.11 -2.62 5.57 30.60 0.17 -2.45 16 19 C -0.09 -3.13 5.25 30.59 0.16 -2.97 16 20 H 0.06 2.33 8.13 -2.38 -0.02 2.32 16 21 H 0.03 1.55 3.27 -2.39 -0.01 1.54 16 22 H 0.06 2.08 7.43 -2.39 -0.02 2.06 16 23 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 24 H 0.33 13.31 8.09 -89.69 -0.73 12.58 16 25 H 0.02 0.85 7.11 -2.39 -0.02 0.83 16 26 H 0.07 2.08 7.60 -2.39 -0.02 2.06 16 27 H 0.05 1.40 8.12 -2.39 -0.02 1.38 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.35 5.15 9.04 -89.69 -0.81 4.34 16 32 H 0.34 5.75 8.99 -89.70 -0.81 4.94 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.02 0.95 7.43 -2.39 -0.02 0.94 16 36 H 0.06 2.31 7.60 -2.39 -0.02 2.29 16 Total: -1.00 -68.17 271.46 -1.20 -69.37 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -1.34 Total: 23.91 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.33 Total: -31.26 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -3.86 Total: -110.10 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 1.67 Total: 48.08 kcal Total: -68.17 -1.20 -69.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914123.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.742 kcal (2) G-P(sol) polarization free energy of solvation -68.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds