Wall clock time and date at job start Sun Mar 29 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.50699 * 109.46952 * 240.00348 * 2 1 3 5 5 H 1.08004 * 120.00154 * 240.00161 * 4 2 1 6 6 C 1.37878 * 119.99936 * 59.99651 * 4 2 1 7 7 N 1.31512 * 120.00128 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47065 * 60.00028 * 8 6 4 10 10 H 1.48497 * 109.46925 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46970 * 300.00008 * 8 6 4 12 12 N 1.46898 * 109.47116 * 120.00546 * 2 1 3 13 13 C 1.46900 * 110.99660 * 206.16213 * 12 2 1 14 14 C 1.53003 * 109.47107 * 208.35473 * 13 12 2 15 15 C 1.53006 * 109.47410 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46902 * 59.99454 * 15 14 13 17 17 N 1.46909 * 109.46768 * 60.00319 * 16 15 14 18 18 C 1.52993 * 109.47550 * 300.00490 * 16 15 14 19 19 C 1.52999 * 109.47283 * 88.35317 * 13 12 2 20 20 H 1.08997 * 109.47136 * 58.80489 * 1 2 3 21 21 H 1.09000 * 109.47148 * 178.80600 * 1 2 3 22 22 H 1.09000 * 109.46719 * 298.80548 * 1 2 3 23 23 H 0.96998 * 119.99844 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99987 * 330.11262 * 12 2 1 25 25 H 1.09007 * 109.47126 * 328.34987 * 13 12 2 26 26 H 1.08995 * 109.47184 * 59.99702 * 14 13 12 27 27 H 1.08998 * 109.46937 * 299.99714 * 14 13 12 28 28 H 1.08994 * 109.46886 * 179.97438 * 15 14 13 29 29 H 1.08998 * 109.46904 * 299.99817 * 15 14 13 30 30 H 1.08998 * 109.47124 * 179.97438 * 16 15 14 31 31 H 1.00899 * 110.99327 * 179.97438 * 17 16 15 32 32 H 1.00892 * 111.00024 * 303.95114 * 17 16 15 33 33 H 1.08998 * 109.46913 * 300.00039 * 18 16 15 34 34 H 1.08995 * 109.47200 * 180.02562 * 18 16 15 35 35 H 1.08994 * 109.47064 * 299.99403 * 19 13 12 36 36 H 1.08998 * 109.47240 * 59.99993 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0197 -0.6926 1.1994 13 6 3.3557 -0.2119 1.5762 14 6 4.1145 -1.3277 2.2975 15 6 5.5063 -0.8273 2.6894 16 6 5.3709 0.3807 3.6185 17 7 4.6332 -0.0112 4.8270 18 6 4.6122 1.4964 2.8973 19 6 3.2199 0.9958 2.5055 20 1 -0.3633 0.5323 -0.8790 21 1 -0.3633 -1.0274 -0.0214 22 1 -0.3633 0.4952 0.9005 23 1 0.7094 1.1619 -3.4843 24 1 1.3703 -0.5927 1.9650 25 1 3.9034 0.0791 0.6797 26 1 4.2113 -2.1881 1.6354 27 1 3.5669 -1.6188 3.1939 28 1 6.0465 -1.6221 3.2037 29 1 6.0536 -0.5366 1.7928 30 1 6.3624 0.7369 3.8981 31 1 4.5308 0.7700 5.4573 32 1 3.7351 -0.4054 4.5904 33 1 5.1595 1.7872 2.0006 34 1 4.5162 2.3572 3.5590 35 1 2.6794 1.7907 1.9916 36 1 2.6723 0.7048 3.4019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575914130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:41 Heat of formation + Delta-G solvation = -20.810256 kcal Electronic energy + Delta-G solvation = -14908.430081 eV Core-core repulsion = 12619.214755 eV Total energy + Delta-G solvation = -2289.215326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.06296 -35.58714 -32.86372 -31.05450 -30.42873 -28.66664 -26.00824 -25.11909 -22.32613 -21.15567 -20.20984 -18.67385 -16.31598 -16.08545 -15.06176 -14.89021 -14.27295 -14.14816 -13.57079 -13.01105 -12.96678 -12.57954 -12.21669 -11.89196 -11.52614 -11.30450 -10.93006 -10.86840 -10.69797 -10.65032 -10.24898 -10.09928 -10.00314 -9.94240 -9.50050 -9.08670 -8.58607 -8.37214 -7.17247 -5.95568 -3.98866 3.34996 3.38864 3.42563 4.45937 4.67973 4.92268 5.03257 5.11126 5.34223 5.43604 5.50696 5.59777 5.74863 5.78737 5.95707 6.03738 6.21122 6.28675 6.31189 6.42054 6.53865 6.73823 6.79434 6.85946 7.01433 7.08284 7.24695 7.49681 7.51971 7.76740 7.95002 8.33914 8.40514 8.79019 9.08889 9.66240 11.10869 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.008027 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.584861 B = 3487.228842 C = 3758.081270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.492 4.492 5 H 0.060 0.940 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.279 1.279 12 N -0.681 5.681 13 C 0.094 3.906 14 C -0.105 4.105 15 C -0.112 4.112 16 C 0.092 3.908 17 N -0.845 5.845 18 C -0.149 4.149 19 C -0.147 4.147 20 H 0.087 0.913 21 H 0.034 0.966 22 H 0.003 0.997 23 H 0.259 0.741 24 H 0.314 0.686 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.333 0.667 32 H 0.343 0.657 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.745 0.596 10.514 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.105 3.895 3 H 0.018 0.982 4 C -0.531 4.531 5 H 0.079 0.921 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.204 1.204 12 N -0.309 5.309 13 C -0.017 4.017 14 C -0.144 4.144 15 C -0.150 4.150 16 C -0.020 4.020 17 N -0.376 5.376 18 C -0.190 4.190 19 C -0.186 4.186 20 H 0.106 0.894 21 H 0.054 0.946 22 H 0.023 0.977 23 H 0.069 0.931 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.145 0.855 32 H 0.158 0.842 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.487 -0.359 10.110 12.018 hybrid contribution -0.709 1.320 -0.876 1.736 sum 5.778 0.962 9.234 10.935 Atomic orbital electron populations 1.21955 0.98488 0.99833 0.99864 1.19156 0.91333 0.92052 0.86988 0.98159 1.21170 1.30276 1.11961 0.89651 0.92133 1.24962 0.95462 0.95179 0.99017 1.69874 1.37456 1.23252 1.23351 0.86605 0.79063 0.79779 0.82193 1.20291 1.21471 1.20431 1.60761 1.01963 1.60902 1.07321 1.21495 0.92505 0.91084 0.96578 1.21506 0.94254 0.98874 0.99742 1.21568 0.98121 0.97070 0.98289 1.21409 0.96692 0.94294 0.89610 1.59052 1.25958 1.36478 1.16113 1.22288 0.97413 0.98245 1.01015 1.22306 0.96397 1.00186 0.99730 0.89421 0.94641 0.97750 0.93088 0.87001 0.90216 0.91360 0.92530 0.91726 0.91715 0.90882 0.85496 0.84182 0.91450 0.92878 0.92071 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.94 37.16 0.33 -3.15 16 2 C 0.21 5.33 2.41 -68.86 -0.17 5.16 16 3 H 0.00 0.02 7.37 -51.93 -0.38 -0.36 16 4 C -0.49 -13.72 8.57 -34.44 -0.30 -14.02 16 5 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.95 11.33 55.43 0.63 -25.32 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 N -0.68 -14.31 6.06 -100.95 -0.61 -14.92 16 13 C 0.09 1.72 2.26 -67.71 -0.15 1.56 16 14 C -0.11 -1.66 5.27 -26.73 -0.14 -1.80 16 15 C -0.11 -1.52 5.64 -26.73 -0.15 -1.67 16 16 C 0.09 1.13 3.69 -67.71 -0.25 0.88 16 17 N -0.85 -9.84 9.12 -4.66 -0.04 -9.88 16 18 C -0.15 -1.98 5.61 -26.71 -0.15 -2.13 16 19 C -0.15 -2.28 4.90 -26.70 -0.13 -2.41 16 20 H 0.09 2.35 6.10 -51.93 -0.32 2.03 16 21 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.00 0.08 8.10 -51.93 -0.42 -0.34 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.31 6.04 8.00 -39.29 -0.31 5.72 16 25 H 0.08 1.70 7.65 -51.92 -0.40 1.30 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 0.85 6.57 -51.93 -0.34 0.50 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.33 3.34 9.04 -39.29 -0.36 2.99 16 32 H 0.34 4.15 5.44 -39.30 -0.21 3.93 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 36 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 LS Contribution 275.80 15.07 4.16 4.16 Total: -1.00 -28.26 275.80 -8.09 -36.34 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -6.00 Total: 9.06 kcal Atomic # 6 Polarization: -14.96 SS G_CDS: -1.20 Total: -16.16 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: -0.03 Total: -50.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.26 -8.09 -36.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.533 kcal (2) G-P(sol) polarization free energy of solvation -28.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds