Wall clock time and date at job start Sun Mar 29 2020 21:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.50699 * 109.46952 * 240.00348 * 2 1 3 5 5 H 1.08004 * 120.00154 * 240.00161 * 4 2 1 6 6 C 1.37878 * 119.99936 * 59.99651 * 4 2 1 7 7 N 1.31512 * 120.00128 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99927 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47065 * 60.00028 * 8 6 4 10 10 H 1.48497 * 109.46925 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46970 * 300.00008 * 8 6 4 12 12 N 1.46898 * 109.47116 * 120.00546 * 2 1 3 13 13 C 1.46900 * 110.99660 * 206.16213 * 12 2 1 14 14 C 1.53003 * 109.47107 * 208.35473 * 13 12 2 15 15 C 1.53006 * 109.47410 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46902 * 59.99454 * 15 14 13 17 17 N 1.46909 * 109.46768 * 60.00319 * 16 15 14 18 18 C 1.52993 * 109.47550 * 300.00490 * 16 15 14 19 19 C 1.52999 * 109.47283 * 88.35317 * 13 12 2 20 20 H 1.08997 * 109.47136 * 58.80489 * 1 2 3 21 21 H 1.09000 * 109.47148 * 178.80600 * 1 2 3 22 22 H 1.09000 * 109.46719 * 298.80548 * 1 2 3 23 23 H 0.96998 * 119.99844 * 179.97438 * 7 6 4 24 24 H 1.00895 * 110.99987 * 330.11262 * 12 2 1 25 25 H 1.09007 * 109.47126 * 328.34987 * 13 12 2 26 26 H 1.08995 * 109.47184 * 59.99702 * 14 13 12 27 27 H 1.08998 * 109.46937 * 299.99714 * 14 13 12 28 28 H 1.08994 * 109.46886 * 179.97438 * 15 14 13 29 29 H 1.08998 * 109.46904 * 299.99817 * 15 14 13 30 30 H 1.08998 * 109.47124 * 179.97438 * 16 15 14 31 31 H 1.00899 * 110.99327 * 179.97438 * 17 16 15 32 32 H 1.00892 * 111.00024 * 303.95114 * 17 16 15 33 33 H 1.08998 * 109.46913 * 300.00039 * 18 16 15 34 34 H 1.08995 * 109.47200 * 180.02562 * 18 16 15 35 35 H 1.08994 * 109.47064 * 299.99403 * 19 13 12 36 36 H 1.08998 * 109.47240 * 59.99993 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0081 9 1 1.8257 -2.5200 -4.0079 10 1 1.8267 -0.4196 -5.2205 11 1 3.8062 -1.1207 -4.0083 12 7 2.0197 -0.6926 1.1994 13 6 3.3557 -0.2119 1.5762 14 6 4.1145 -1.3277 2.2975 15 6 5.5063 -0.8273 2.6894 16 6 5.3709 0.3807 3.6185 17 7 4.6332 -0.0112 4.8270 18 6 4.6122 1.4964 2.8973 19 6 3.2199 0.9958 2.5055 20 1 -0.3633 0.5323 -0.8790 21 1 -0.3633 -1.0274 -0.0214 22 1 -0.3633 0.4952 0.9005 23 1 0.7094 1.1619 -3.4843 24 1 1.3703 -0.5927 1.9650 25 1 3.9034 0.0791 0.6797 26 1 4.2113 -2.1881 1.6354 27 1 3.5669 -1.6188 3.1939 28 1 6.0465 -1.6221 3.2037 29 1 6.0536 -0.5366 1.7928 30 1 6.3624 0.7369 3.8981 31 1 4.5308 0.7700 5.4573 32 1 3.7351 -0.4054 4.5904 33 1 5.1595 1.7872 2.0006 34 1 4.5162 2.3572 3.5590 35 1 2.6794 1.7907 1.9916 36 1 2.6723 0.7048 3.4019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:41 Heat of formation + Delta-G solvation = -40.827711 kcal Electronic energy + Delta-G solvation = -14909.298103 eV Core-core repulsion = 12619.214755 eV Total energy + Delta-G solvation = -2290.083348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.32847 -37.28013 -34.67108 -32.62883 -31.65797 -30.12893 -27.47258 -27.26272 -23.54320 -22.57985 -22.11233 -19.88839 -18.24240 -17.37978 -16.81497 -16.32327 -15.80233 -15.45415 -15.00626 -14.83286 -14.31390 -14.03795 -13.59786 -13.30647 -13.09475 -12.89452 -12.74932 -12.60272 -12.38717 -12.10255 -12.07571 -11.95795 -11.43814 -11.40017 -11.04033 -10.97425 -10.51664 -9.53541 -8.93829 -8.09824 -6.21383 1.39913 1.41549 1.49447 2.42156 3.16385 3.52577 3.74585 3.82911 3.94852 4.12930 4.30510 4.38939 4.53049 4.61054 4.68678 4.77672 4.80340 4.93917 4.95923 5.06194 5.13573 5.15882 5.19516 5.30498 5.43697 5.49725 5.58493 5.71645 5.85433 6.30856 6.32678 6.52332 6.66497 6.92395 7.02103 7.48212 8.94442 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.041620 B = 0.008027 C = 0.007449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.584861 B = 3487.228842 C = 3758.081270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.219 3.781 3 H -0.031 1.031 4 C -0.511 4.511 5 H 0.049 0.951 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.683 5.683 13 C 0.095 3.905 14 C -0.096 4.096 15 C -0.109 4.109 16 C 0.099 3.901 17 N -0.844 5.844 18 C -0.145 4.145 19 C -0.138 4.138 20 H 0.061 0.939 21 H 0.033 0.967 22 H 0.031 0.969 23 H 0.261 0.739 24 H 0.326 0.674 25 H 0.040 0.960 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.346 0.654 32 H 0.341 0.659 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.035 0.965 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.498 0.216 11.827 13.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.110 3.890 3 H -0.014 1.014 4 C -0.550 4.550 5 H 0.067 0.933 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.200 1.200 12 N -0.313 5.313 13 C -0.015 4.015 14 C -0.134 4.134 15 C -0.147 4.147 16 C -0.013 4.013 17 N -0.375 5.375 18 C -0.185 4.185 19 C -0.177 4.177 20 H 0.079 0.921 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.144 0.856 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.159 0.841 32 H 0.156 0.844 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.054 0.946 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.248 -0.737 11.452 13.572 hybrid contribution -0.944 1.449 -1.248 2.132 sum 6.303 0.712 10.204 12.015 Atomic orbital electron populations 1.21782 0.97852 0.99565 0.99954 1.18909 0.91752 0.90274 0.88040 1.01395 1.21427 1.30467 1.11863 0.91240 0.93321 1.25709 0.95604 0.95872 1.01827 1.69998 1.38126 1.24259 1.23978 0.85641 0.78628 0.78791 0.78749 1.19745 1.20767 1.19957 1.60661 1.03350 1.60528 1.06738 1.21478 0.90757 0.93314 0.95966 1.21396 0.95528 0.97094 0.99412 1.21547 0.96477 0.98094 0.98620 1.21345 0.97458 0.93023 0.89442 1.59032 1.25746 1.37081 1.15684 1.22275 0.95684 0.99399 1.01120 1.22160 0.98099 0.98031 0.99417 0.92063 0.94772 0.95018 0.93024 0.85648 0.94140 0.93280 0.91136 0.90486 0.92271 0.89200 0.84111 0.84429 0.92603 0.90876 0.94579 0.90916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 8.94 71.98 0.64 -5.89 16 2 C 0.22 11.24 2.41 44.17 0.11 11.35 16 3 H -0.03 -1.80 7.37 -2.39 -0.02 -1.81 16 4 C -0.51 -29.17 8.57 25.60 0.22 -28.95 16 5 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 6 C 0.01 0.44 5.30 84.66 0.45 0.89 16 7 N -0.92 -54.17 11.33 21.45 0.24 -53.93 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 9 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 N -0.68 -28.86 6.06 -473.30 -2.87 -31.73 16 13 C 0.10 3.49 2.26 44.92 0.10 3.59 16 14 C -0.10 -2.93 5.27 30.60 0.16 -2.77 16 15 C -0.11 -2.76 5.64 30.60 0.17 -2.59 16 16 C 0.10 2.18 3.69 44.91 0.17 2.34 16 17 N -0.84 -16.84 9.12 -168.67 -1.54 -18.38 16 18 C -0.14 -3.58 5.61 30.61 0.17 -3.41 16 19 C -0.14 -4.17 4.90 30.61 0.15 -4.02 16 20 H 0.06 3.33 6.10 -2.39 -0.01 3.32 16 21 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.33 12.27 8.00 -89.70 -0.72 11.55 16 25 H 0.04 1.79 7.65 -2.38 -0.02 1.78 16 26 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 27 H 0.07 1.96 6.57 -2.39 -0.02 1.94 16 28 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.35 5.65 9.04 -89.69 -0.81 4.84 16 32 H 0.34 7.15 5.44 -89.70 -0.49 6.66 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.04 1.27 7.70 -2.39 -0.02 1.25 16 36 H 0.07 1.90 6.75 -2.39 -0.02 1.89 16 Total: -1.00 -60.97 275.80 -0.74 -61.72 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -0.94 Total: 24.83 kcal Atomic # 6 Polarization: -31.78 SS G_CDS: 2.34 Total: -29.44 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.16 Total: -104.04 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -60.97 -0.74 -61.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.887 kcal (2) G-P(sol) polarization free energy of solvation -60.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds