Wall clock time and date at job start Sun Mar 29 2020 21:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47175 * 240.00280 * 2 1 3 5 5 H 1.08005 * 119.99865 * 240.00342 * 4 2 1 6 6 C 1.37874 * 120.00467 * 59.99898 * 4 2 1 7 7 N 1.31520 * 119.99671 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00209 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47254 * 90.00375 * 8 6 4 10 10 H 1.48511 * 109.47022 * 210.00020 * 8 6 4 11 11 H 1.48497 * 109.47371 * 329.99959 * 8 6 4 12 12 N 1.46901 * 109.46923 * 119.99974 * 2 1 3 13 13 C 1.46895 * 111.00071 * 275.00149 * 12 2 1 14 14 H 1.09001 * 110.43288 * 323.91065 * 13 12 2 15 15 C 1.54261 * 110.48837 * 86.45273 * 13 12 2 16 16 C 1.53876 * 106.59990 * 142.28620 * 15 13 12 17 17 C 1.54267 * 106.59870 * 0.02562 * 16 15 13 18 18 H 1.09004 * 110.48597 * 95.06674 * 17 16 15 19 19 C 1.53003 * 110.48667 * 217.71131 * 17 16 15 20 20 N 1.46902 * 109.46881 * 293.54402 * 19 17 16 21 21 C 1.54888 * 110.48643 * 201.23001 * 13 12 2 22 22 H 1.08997 * 109.47016 * 300.00220 * 1 2 3 23 23 H 1.09005 * 109.46616 * 59.99839 * 1 2 3 24 24 H 1.08997 * 109.47252 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99917 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99667 * 151.04510 * 12 2 1 27 27 H 1.08998 * 110.03492 * 23.00495 * 15 13 12 28 28 H 1.08999 * 110.07717 * 261.59205 * 15 13 12 29 29 H 1.08995 * 110.03160 * 119.28453 * 16 15 13 30 30 H 1.08998 * 110.03319 * 240.71542 * 16 15 13 31 31 H 1.08994 * 109.46757 * 53.54681 * 19 17 16 32 32 H 1.08996 * 109.46708 * 173.54504 * 19 17 16 33 33 H 1.00895 * 111.00207 * 56.04507 * 20 19 17 34 34 H 1.00898 * 110.99974 * 180.02562 * 20 19 17 35 35 H 1.09005 * 110.75648 * 321.69142 * 21 13 12 36 36 H 1.08999 * 110.75852 * 85.06073 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1615 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6294 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 1 2.3826 1.2191 2.0229 15 6 0.7204 0.2771 3.0691 16 6 1.0245 0.3695 4.5747 17 6 2.5608 0.3686 4.7148 18 1 2.9390 1.3892 4.7754 19 6 2.9859 -0.4353 5.9452 20 7 2.5271 0.2504 7.1606 21 6 3.0597 -0.3192 3.4195 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7096 1.1619 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 0.1495 -0.6273 2.8585 28 1 0.1608 1.1551 2.7467 29 1 0.6134 1.2929 4.9826 30 1 0.6013 -0.4899 5.0946 31 1 2.5427 -1.4301 5.9000 32 1 4.0722 -0.5220 5.9650 33 1 1.5297 0.4007 7.1364 34 1 2.7961 -0.2610 7.9877 35 1 2.9803 -1.4032 3.5022 36 1 4.0839 -0.0220 3.1943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575914941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:03 Heat of formation + Delta-G solvation = -21.615295 kcal Electronic energy + Delta-G solvation = -14491.259176 eV Core-core repulsion = 12202.008941 eV Total energy + Delta-G solvation = -2289.250235 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.57913 -35.54640 -33.63185 -31.80456 -28.97354 -28.51636 -25.93701 -24.97913 -23.26689 -20.03453 -19.97319 -18.90785 -16.43099 -16.18399 -15.65666 -14.81192 -14.41846 -14.34647 -13.51597 -13.15755 -13.03783 -12.57549 -12.42104 -11.60255 -11.34345 -10.97209 -10.87251 -10.73039 -10.62463 -10.53338 -10.39916 -10.23538 -10.01200 -9.91880 -9.66175 -8.80886 -8.75455 -8.43319 -7.24290 -5.99867 -4.06357 3.31018 3.37248 3.40259 4.40207 4.46192 4.84223 4.89115 5.08459 5.31296 5.38233 5.54282 5.59787 5.70378 5.82152 5.95190 6.00479 6.06941 6.19684 6.33232 6.43670 6.62268 6.66770 6.81236 6.98168 7.02704 7.21860 7.30227 7.30681 7.58040 7.81537 7.95101 8.32016 8.45715 8.73675 9.05408 9.59557 11.06272 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069896 B = 0.006058 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.499970 B = 4620.940485 C = 4874.099457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.518 4.518 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.683 5.683 13 C 0.085 3.915 14 H 0.039 0.961 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.090 4.090 18 H 0.078 0.922 19 C 0.069 3.931 20 N -0.853 5.853 21 C -0.119 4.119 22 H 0.010 0.990 23 H 0.077 0.923 24 H 0.028 0.972 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.073 0.927 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.822 -1.446 13.997 14.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.314 5.314 13 C -0.025 4.025 14 H 0.057 0.943 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.109 4.109 18 H 0.097 0.903 19 C -0.061 4.061 20 N -0.382 5.382 21 C -0.158 4.158 22 H 0.029 0.971 23 H 0.096 0.904 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.591 -0.976 13.762 13.888 hybrid contribution 0.435 -0.739 -0.991 1.310 sum 2.025 -1.715 12.771 13.044 Atomic orbital electron populations 1.21777 0.97946 0.99182 0.99550 1.19147 0.92681 0.92139 0.85648 0.98276 1.21296 1.31355 1.12439 0.90592 0.92311 1.24922 0.95099 0.94995 0.99022 1.69909 1.36758 1.22876 1.23370 0.86533 0.79190 0.79326 0.82536 1.20657 1.21300 1.19969 1.60802 1.31761 1.32844 1.05974 1.22310 0.93906 0.94825 0.91507 0.94323 1.22216 0.97926 1.02077 0.92682 1.22199 0.95205 1.00675 0.97519 1.21959 0.95886 0.99705 0.93344 0.90345 1.21840 0.99998 0.94670 0.89631 1.58733 1.20356 1.54861 1.04289 1.22680 0.98451 1.00547 0.94084 0.97097 0.90409 0.95232 0.92989 0.85214 0.90822 0.92559 0.92371 0.92690 0.95463 0.91314 0.84730 0.85159 0.90881 0.92141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 8.99 37.16 0.33 -2.86 16 2 C 0.21 5.45 2.60 -68.86 -0.18 5.27 16 3 H 0.00 -0.01 7.47 -51.93 -0.39 -0.40 16 4 C -0.52 -14.41 8.59 -34.44 -0.30 -14.71 16 5 H 0.06 1.61 7.62 -52.48 -0.40 1.21 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.80 11.32 55.43 0.63 -25.17 16 8 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.68 -14.74 6.13 -99.22 -0.61 -15.35 16 13 C 0.09 1.56 3.17 -66.06 -0.21 1.35 16 14 H 0.04 0.78 7.51 -51.93 -0.39 0.39 16 15 C -0.11 -1.86 4.90 -25.61 -0.13 -1.98 16 16 C -0.12 -1.56 5.54 -25.61 -0.14 -1.70 16 17 C -0.09 -1.16 3.12 -88.95 -0.28 -1.43 16 18 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 19 C 0.07 0.76 6.16 -3.82 -0.02 0.74 16 20 N -0.85 -8.40 9.62 -10.37 -0.10 -8.50 16 21 C -0.12 -1.75 5.73 -24.73 -0.14 -1.89 16 22 H 0.01 0.23 5.87 -51.93 -0.30 -0.07 16 23 H 0.08 2.15 6.07 -51.93 -0.32 1.83 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.33 6.98 7.96 -39.29 -0.31 6.66 16 27 H 0.07 1.33 8.04 -51.93 -0.42 0.91 16 28 H 0.06 0.98 7.38 -51.93 -0.38 0.60 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.68 7.77 -51.93 -0.40 0.27 16 31 H 0.03 0.30 8.05 -51.93 -0.42 -0.12 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.34 3.12 8.19 -39.29 -0.32 2.80 16 34 H 0.34 2.65 9.08 -39.29 -0.36 2.29 16 35 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 280.13 15.07 4.22 4.22 Total: -1.00 -28.76 280.13 -8.11 -36.87 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.08 Total: 7.08 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -1.16 Total: -15.60 kcal Atomic # 7 Polarization: -48.94 SS G_CDS: -0.08 Total: -49.02 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.76 -8.11 -36.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.258 kcal (2) G-P(sol) polarization free energy of solvation -28.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds