Wall clock time and date at job start Sun Mar 29 2020 21:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46991 * 2 1 4 4 C 1.50699 * 109.47175 * 240.00280 * 2 1 3 5 5 H 1.08005 * 119.99865 * 240.00342 * 4 2 1 6 6 C 1.37874 * 120.00467 * 59.99898 * 4 2 1 7 7 N 1.31520 * 119.99671 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00209 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47254 * 90.00375 * 8 6 4 10 10 H 1.48511 * 109.47022 * 210.00020 * 8 6 4 11 11 H 1.48497 * 109.47371 * 329.99959 * 8 6 4 12 12 N 1.46901 * 109.46923 * 119.99974 * 2 1 3 13 13 C 1.46895 * 111.00071 * 275.00149 * 12 2 1 14 14 H 1.09001 * 110.43288 * 323.91065 * 13 12 2 15 15 C 1.54261 * 110.48837 * 86.45273 * 13 12 2 16 16 C 1.53876 * 106.59990 * 142.28620 * 15 13 12 17 17 C 1.54267 * 106.59870 * 0.02562 * 16 15 13 18 18 H 1.09004 * 110.48597 * 95.06674 * 17 16 15 19 19 C 1.53003 * 110.48667 * 217.71131 * 17 16 15 20 20 N 1.46902 * 109.46881 * 293.54402 * 19 17 16 21 21 C 1.54888 * 110.48643 * 201.23001 * 13 12 2 22 22 H 1.08997 * 109.47016 * 300.00220 * 1 2 3 23 23 H 1.09005 * 109.46616 * 59.99839 * 1 2 3 24 24 H 1.08997 * 109.47252 * 179.97438 * 1 2 3 25 25 H 0.97003 * 119.99917 * 179.97438 * 7 6 4 26 26 H 1.00898 * 110.99667 * 151.04510 * 12 2 1 27 27 H 1.08998 * 110.03492 * 23.00495 * 15 13 12 28 28 H 1.08999 * 110.07717 * 261.59205 * 15 13 12 29 29 H 1.08995 * 110.03160 * 119.28453 * 16 15 13 30 30 H 1.08998 * 110.03319 * 240.71542 * 16 15 13 31 31 H 1.08994 * 109.46757 * 53.54681 * 19 17 16 32 32 H 1.08996 * 109.46708 * 173.54504 * 19 17 16 33 33 H 1.00895 * 111.00207 * 56.04507 * 20 19 17 34 34 H 1.00898 * 110.99974 * 180.02562 * 20 19 17 35 35 H 1.09005 * 110.75648 * 321.69142 * 21 13 12 36 36 H 1.08999 * 110.75852 * 85.06073 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3429 -2.1615 -4.4119 10 1 2.4867 -0.1412 -5.1123 11 1 3.6294 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1995 13 6 2.0824 0.2225 2.3469 14 1 2.3826 1.2191 2.0229 15 6 0.7204 0.2771 3.0691 16 6 1.0245 0.3695 4.5747 17 6 2.5608 0.3686 4.7148 18 1 2.9390 1.3892 4.7754 19 6 2.9859 -0.4353 5.9452 20 7 2.5271 0.2504 7.1606 21 6 3.0597 -0.3192 3.4195 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7096 1.1619 -3.4844 26 1 2.9173 -1.1205 1.0287 27 1 0.1495 -0.6273 2.8585 28 1 0.1608 1.1551 2.7467 29 1 0.6134 1.2929 4.9826 30 1 0.6013 -0.4899 5.0946 31 1 2.5427 -1.4301 5.9000 32 1 4.0722 -0.5220 5.9650 33 1 1.5297 0.4007 7.1364 34 1 2.7961 -0.2610 7.9877 35 1 2.9803 -1.4032 3.5022 36 1 4.0839 -0.0220 3.1943 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:03 Heat of formation + Delta-G solvation = -42.272259 kcal Electronic energy + Delta-G solvation = -14492.154929 eV Core-core repulsion = 12202.008941 eV Total energy + Delta-G solvation = -2290.145988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.87628 -37.14681 -35.06169 -33.53417 -30.59153 -29.83143 -27.61317 -26.88866 -24.33562 -21.99702 -21.26725 -20.21430 -18.47715 -17.25974 -16.78725 -16.67892 -15.84545 -15.57290 -15.34485 -14.54032 -14.39675 -13.88695 -13.66984 -13.27938 -13.22252 -12.80459 -12.68811 -12.41383 -12.23765 -12.05071 -11.85202 -11.69298 -11.48057 -11.44453 -11.22364 -10.82087 -10.55875 -9.56264 -9.07305 -8.13655 -6.28569 1.41605 1.42541 1.52883 2.40943 3.14317 3.46264 3.64948 3.75259 3.90116 4.17391 4.40762 4.44646 4.57326 4.66758 4.70780 4.81829 4.88706 4.91772 5.01554 5.06670 5.15314 5.19960 5.27279 5.29545 5.38546 5.53508 5.54428 5.70053 5.87982 6.22652 6.28141 6.50019 6.65726 6.80908 7.02342 7.42265 8.91931 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.069896 B = 0.006058 C = 0.005743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.499970 B = 4620.940485 C = 4874.099457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.217 3.783 3 H -0.037 1.037 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.266 1.266 12 N -0.679 5.679 13 C 0.077 3.923 14 H 0.016 0.984 15 C -0.109 4.109 16 C -0.108 4.108 17 C -0.082 4.082 18 H 0.072 0.928 19 C 0.076 3.924 20 N -0.858 5.858 21 C -0.109 4.109 22 H 0.028 0.972 23 H 0.052 0.948 24 H 0.025 0.975 25 H 0.262 0.738 26 H 0.332 0.668 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.072 0.928 33 H 0.345 0.655 34 H 0.350 0.650 35 H 0.078 0.922 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.377 -2.400 15.182 15.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.020 1.020 4 C -0.578 4.578 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.191 1.191 12 N -0.309 5.309 13 C -0.034 4.034 14 H 0.034 0.966 15 C -0.147 4.147 16 C -0.145 4.145 17 C -0.101 4.101 18 H 0.091 0.909 19 C -0.055 4.055 20 N -0.389 5.389 21 C -0.147 4.147 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.044 0.956 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.079 0.921 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.051 0.949 32 H 0.091 0.909 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.097 0.903 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.149 -1.937 14.979 15.256 hybrid contribution 0.253 -0.401 -1.327 1.409 sum 2.402 -2.339 13.652 14.057 Atomic orbital electron populations 1.21592 0.97738 0.98646 0.99178 1.18941 0.92835 0.90335 0.87081 1.01964 1.21632 1.31715 1.12703 0.91724 0.92211 1.25772 0.95166 0.95669 1.02160 1.70044 1.37576 1.24108 1.24144 0.85457 0.78887 0.78160 0.78507 1.20089 1.20892 1.19078 1.60750 1.31859 1.33020 1.05280 1.22446 0.96291 0.93282 0.91352 0.96601 1.22157 0.96550 1.00771 0.95258 1.22126 0.95659 1.02084 0.94677 1.21878 0.95354 0.99522 0.93376 0.90930 1.21713 1.00313 0.94428 0.89062 1.58688 1.20819 1.55042 1.04391 1.22595 0.97725 1.00832 0.93586 0.95294 0.92919 0.95608 0.92870 0.85052 0.92095 0.93857 0.91148 0.91068 0.94937 0.90911 0.84202 0.83704 0.90329 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.85 8.99 71.98 0.65 -5.20 16 2 C 0.22 11.45 2.60 44.17 0.11 11.56 16 3 H -0.04 -2.20 7.47 -2.38 -0.02 -2.21 16 4 C -0.54 -30.36 8.59 25.60 0.22 -30.14 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 9 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 N -0.68 -29.57 6.13 -467.83 -2.87 -32.44 16 13 C 0.08 2.81 3.17 45.99 0.15 2.95 16 14 H 0.02 0.66 7.51 -2.39 -0.02 0.64 16 15 C -0.11 -3.60 4.90 31.32 0.15 -3.44 16 16 C -0.11 -2.62 5.54 31.32 0.17 -2.44 16 17 C -0.08 -1.94 3.12 -9.71 -0.03 -1.97 16 18 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 19 C 0.08 1.44 6.16 86.30 0.53 1.97 16 20 N -0.86 -14.34 9.62 -186.72 -1.80 -16.13 16 21 C -0.11 -3.05 5.73 31.89 0.18 -2.86 16 22 H 0.03 1.33 5.87 -2.39 -0.01 1.32 16 23 H 0.05 2.98 6.07 -2.38 -0.01 2.97 16 24 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.33 14.06 7.96 -89.70 -0.71 13.35 16 27 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 28 H 0.04 1.51 7.38 -2.39 -0.02 1.49 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.54 7.77 -2.39 -0.02 1.52 16 31 H 0.03 0.60 8.05 -2.39 -0.02 0.58 16 32 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.34 5.26 8.19 -89.70 -0.74 4.53 16 34 H 0.35 4.44 9.08 -89.70 -0.81 3.63 16 35 H 0.08 2.14 8.06 -2.38 -0.02 2.12 16 36 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -61.58 280.13 -1.00 -62.58 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -1.19 Total: 22.35 kcal Atomic # 6 Polarization: -31.07 SS G_CDS: 2.59 Total: -28.48 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -4.42 Total: -102.52 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -61.58 -1.00 -62.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.304 kcal (2) G-P(sol) polarization free energy of solvation -61.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds