Wall clock time and date at job start Sun Mar 29 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47647 * 2 1 4 4 C 1.50703 * 109.47189 * 239.99516 * 2 1 3 5 5 H 1.08001 * 120.00088 * 240.00011 * 4 2 1 6 6 C 1.37875 * 119.99890 * 60.00373 * 4 2 1 7 7 N 1.31515 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99933 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47551 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47164 * 120.00096 * 8 6 4 11 11 H 1.48504 * 109.47211 * 239.99568 * 8 6 4 12 12 N 1.46910 * 109.47059 * 119.99838 * 2 1 3 13 13 C 1.46900 * 110.99818 * 274.99844 * 12 2 1 14 14 H 1.09001 * 110.06079 * 326.41815 * 13 12 2 15 15 C 1.54275 * 110.03003 * 87.83210 * 13 12 2 16 16 C 1.54890 * 104.19335 * 142.89509 * 15 13 12 17 17 C 1.54894 * 102.74958 * 322.05475 * 16 15 13 18 18 H 1.08997 * 110.59876 * 279.21250 * 17 16 15 19 19 C 1.52999 * 110.48644 * 156.61860 * 17 16 15 20 20 N 1.46906 * 109.46897 * 70.22952 * 19 17 16 21 21 C 1.53871 * 110.03333 * 204.99790 * 13 12 2 22 22 H 1.08993 * 109.47330 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47003 * 300.00486 * 1 2 3 24 24 H 1.09004 * 109.46877 * 60.00239 * 1 2 3 25 25 H 0.97005 * 119.99786 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99598 * 38.95488 * 12 2 1 27 27 H 1.08997 * 110.48285 * 261.57109 * 15 13 12 28 28 H 1.08997 * 110.48558 * 24.21961 * 15 13 12 29 29 H 1.09002 * 110.75425 * 203.74652 * 16 15 13 30 30 H 1.08999 * 110.75682 * 80.36734 * 16 15 13 31 31 H 1.09000 * 109.47486 * 310.22976 * 19 17 16 32 32 H 1.09001 * 109.47362 * 190.22253 * 19 17 16 33 33 H 1.00896 * 111.00309 * 179.97438 * 20 19 17 34 34 H 1.00902 * 110.99923 * 303.95801 * 20 19 17 35 35 H 1.08992 * 110.03542 * 121.42885 * 21 13 12 36 36 H 1.09006 * 110.07385 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 1 2.3398 1.2270 2.0105 15 6 0.7260 0.2429 3.0816 16 6 1.1066 0.3544 4.5788 17 6 2.3659 -0.5419 4.6791 18 1 2.0841 -1.5923 4.7518 19 6 3.2196 -0.1334 5.8813 20 7 2.5271 -0.5050 7.1225 21 6 3.1250 -0.2763 3.3627 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7097 1.1617 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.1375 1.1066 2.7722 28 1 0.1774 -0.6804 2.8952 29 1 0.3065 -0.0315 5.2105 30 1 1.3444 1.3853 4.8412 31 1 3.3800 0.9446 5.8635 32 1 4.1811 -0.6447 5.8347 33 1 3.0713 -0.2458 7.9316 34 1 1.6059 -0.0949 7.1593 35 1 3.8884 0.4858 3.5191 36 1 3.5852 -1.1973 3.0047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575914944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:11 Heat of formation + Delta-G solvation = -19.802790 kcal Electronic energy + Delta-G solvation = -14511.768382 eV Core-core repulsion = 12222.596743 eV Total energy + Delta-G solvation = -2289.171639 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.67795 -35.61440 -33.63126 -31.77748 -28.80466 -28.58635 -25.71822 -25.03226 -23.21727 -20.35971 -19.97148 -19.30126 -16.28790 -15.96104 -15.65943 -14.95280 -14.46904 -14.20317 -13.26288 -13.16263 -12.76192 -12.52788 -12.42467 -11.93427 -11.36159 -11.23910 -10.89466 -10.67910 -10.64289 -10.47053 -10.44705 -10.24220 -10.11656 -10.00875 -9.71561 -8.86320 -8.80752 -8.32101 -7.15166 -5.94442 -3.97361 3.33981 3.41584 3.47328 4.45570 4.49013 4.83177 4.92996 5.04166 5.36470 5.39683 5.48735 5.58645 5.73154 5.86481 5.94227 5.98347 6.09314 6.14553 6.22406 6.36908 6.60018 6.68123 6.72196 6.79099 6.95413 7.03410 7.17491 7.30376 7.45715 7.79981 7.95048 8.34759 8.62248 8.70608 9.10717 9.68054 11.12510 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067797 B = 0.006115 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.895574 B = 4577.940581 C = 4832.356964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.031 0.969 4 C -0.493 4.493 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.286 1.286 12 N -0.678 5.678 13 C 0.086 3.914 14 H 0.070 0.930 15 C -0.148 4.148 16 C -0.120 4.120 17 C -0.092 4.092 18 H 0.079 0.921 19 C 0.068 3.932 20 N -0.853 5.853 21 C -0.109 4.109 22 H 0.025 0.975 23 H 0.010 0.990 24 H 0.085 0.915 25 H 0.258 0.742 26 H 0.326 0.674 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.336 0.664 34 H 0.339 0.661 35 H 0.057 0.943 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 0.055 14.477 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.103 3.897 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.212 1.212 12 N -0.307 5.307 13 C -0.025 4.025 14 H 0.089 0.911 15 C -0.187 4.187 16 C -0.158 4.158 17 C -0.111 4.111 18 H 0.098 0.902 19 C -0.062 4.062 20 N -0.382 5.382 21 C -0.148 4.148 22 H 0.044 0.956 23 H 0.029 0.971 24 H 0.104 0.896 25 H 0.068 0.932 26 H 0.143 0.857 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.088 0.912 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.735 -0.505 13.866 13.983 hybrid contribution -0.775 0.813 -0.503 1.231 sum 0.960 0.308 13.363 13.401 Atomic orbital electron populations 1.22513 1.00749 0.99068 1.00646 1.19221 0.89637 0.94194 0.86663 0.95087 1.21240 1.29915 1.12335 0.89730 0.91970 1.24954 0.95402 0.95236 0.99034 1.69903 1.37560 1.23286 1.23107 0.86471 0.78489 0.79673 0.82937 1.19748 1.21260 1.21196 1.60888 1.57781 1.08652 1.03361 1.22174 0.92253 0.96902 0.91165 0.91140 1.23209 0.99128 1.01633 0.94744 1.22534 0.97219 0.98938 0.97105 1.22047 0.95145 1.00184 0.93727 0.90242 1.21872 0.97465 0.97417 0.89450 1.58740 1.07193 1.68024 1.04228 1.22236 0.97675 1.01812 0.93106 0.95580 0.97069 0.89587 0.93227 0.85670 0.92055 0.91701 0.92257 0.92253 0.95663 0.91207 0.85188 0.84859 0.92459 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.73 37.16 0.32 -3.80 16 2 C 0.21 5.33 2.57 -68.86 -0.18 5.16 16 3 H 0.03 0.87 7.43 -51.93 -0.39 0.48 16 4 C -0.49 -13.85 8.84 -34.44 -0.30 -14.16 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 6 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.03 11.32 55.43 0.63 -25.40 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.68 -14.47 5.94 -99.77 -0.59 -15.06 16 13 C 0.09 1.54 3.23 -66.59 -0.21 1.32 16 14 H 0.07 1.36 7.44 -51.93 -0.39 0.98 16 15 C -0.15 -2.31 4.94 -25.07 -0.12 -2.44 16 16 C -0.12 -1.52 5.69 -24.74 -0.14 -1.66 16 17 C -0.09 -1.18 3.09 -88.96 -0.27 -1.45 16 18 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 19 C 0.07 0.75 6.12 -3.82 -0.02 0.73 16 20 N -0.85 -8.36 9.62 -10.37 -0.10 -8.46 16 21 C -0.11 -1.64 6.17 -25.61 -0.16 -1.80 16 22 H 0.03 0.60 8.13 -51.93 -0.42 0.18 16 23 H 0.01 0.23 5.93 -51.93 -0.31 -0.08 16 24 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.33 6.69 7.84 -39.29 -0.31 6.39 16 27 H 0.06 1.00 7.36 -51.93 -0.38 0.61 16 28 H 0.06 1.05 7.56 -51.93 -0.39 0.66 16 29 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 30 H 0.06 0.72 7.97 -51.93 -0.41 0.30 16 31 H 0.03 0.27 8.02 -51.93 -0.42 -0.15 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.34 2.64 9.08 -39.29 -0.36 2.28 16 34 H 0.34 3.05 8.28 -39.29 -0.33 2.73 16 35 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 36 H 0.08 1.22 7.92 -51.93 -0.41 0.81 16 LS Contribution 279.75 15.07 4.22 4.22 Total: -1.00 -28.67 279.75 -8.10 -36.76 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -6.04 Total: 7.88 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -1.19 Total: -16.67 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -0.07 Total: -48.93 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -28.67 -8.10 -36.76 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.960 kcal (2) G-P(sol) polarization free energy of solvation -28.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds