Wall clock time and date at job start Sun Mar 29 2020 21:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47647 * 2 1 4 4 C 1.50703 * 109.47189 * 239.99516 * 2 1 3 5 5 H 1.08001 * 120.00088 * 240.00011 * 4 2 1 6 6 C 1.37875 * 119.99890 * 60.00373 * 4 2 1 7 7 N 1.31515 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99933 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47551 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47164 * 120.00096 * 8 6 4 11 11 H 1.48504 * 109.47211 * 239.99568 * 8 6 4 12 12 N 1.46910 * 109.47059 * 119.99838 * 2 1 3 13 13 C 1.46900 * 110.99818 * 274.99844 * 12 2 1 14 14 H 1.09001 * 110.06079 * 326.41815 * 13 12 2 15 15 C 1.54275 * 110.03003 * 87.83210 * 13 12 2 16 16 C 1.54890 * 104.19335 * 142.89509 * 15 13 12 17 17 C 1.54894 * 102.74958 * 322.05475 * 16 15 13 18 18 H 1.08997 * 110.59876 * 279.21250 * 17 16 15 19 19 C 1.52999 * 110.48644 * 156.61860 * 17 16 15 20 20 N 1.46906 * 109.46897 * 70.22952 * 19 17 16 21 21 C 1.53871 * 110.03333 * 204.99790 * 13 12 2 22 22 H 1.08993 * 109.47330 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47003 * 300.00486 * 1 2 3 24 24 H 1.09004 * 109.46877 * 60.00239 * 1 2 3 25 25 H 0.97005 * 119.99786 * 179.97438 * 7 6 4 26 26 H 1.00900 * 110.99598 * 38.95488 * 12 2 1 27 27 H 1.08997 * 110.48285 * 261.57109 * 15 13 12 28 28 H 1.08997 * 110.48558 * 24.21961 * 15 13 12 29 29 H 1.09002 * 110.75425 * 203.74652 * 16 15 13 30 30 H 1.08999 * 110.75682 * 80.36734 * 16 15 13 31 31 H 1.09000 * 109.47486 * 310.22976 * 19 17 16 32 32 H 1.09001 * 109.47362 * 190.22253 * 19 17 16 33 33 H 1.00896 * 111.00309 * 179.97438 * 20 19 17 34 34 H 1.00902 * 110.99923 * 303.95801 * 20 19 17 35 35 H 1.08992 * 110.03542 * 121.42885 * 21 13 12 36 36 H 1.09006 * 110.07385 * 0.02562 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1484 -2.2859 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1860 -4.8160 12 7 2.0197 -0.6925 1.1995 13 6 2.0825 0.2227 2.3469 14 1 2.3398 1.2270 2.0105 15 6 0.7260 0.2429 3.0816 16 6 1.1066 0.3544 4.5788 17 6 2.3659 -0.5419 4.6791 18 1 2.0841 -1.5923 4.7518 19 6 3.2196 -0.1334 5.8813 20 7 2.5271 -0.5050 7.1225 21 6 3.1250 -0.2763 3.3627 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7097 1.1617 -3.4844 26 1 1.4495 -1.4979 1.4101 27 1 0.1375 1.1066 2.7722 28 1 0.1774 -0.6804 2.8952 29 1 0.3065 -0.0315 5.2105 30 1 1.3444 1.3853 4.8412 31 1 3.3800 0.9446 5.8635 32 1 4.1811 -0.6447 5.8347 33 1 3.0713 -0.2458 7.9316 34 1 1.6059 -0.0949 7.1593 35 1 3.8884 0.4858 3.5191 36 1 3.5852 -1.1973 3.0047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575914944.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:11 Heat of formation + Delta-G solvation = -40.281349 kcal Electronic energy + Delta-G solvation = -14512.656399 eV Core-core repulsion = 12222.596743 eV Total energy + Delta-G solvation = -2290.059656 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.97223 -37.15985 -35.06175 -33.51230 -30.35300 -29.85849 -27.33911 -26.99162 -24.26127 -22.26165 -21.32878 -20.49986 -18.33017 -17.05931 -16.81193 -16.66549 -15.92134 -15.52426 -14.75397 -14.51536 -14.25045 -13.99102 -13.69688 -13.45309 -13.22061 -12.95018 -12.79026 -12.42642 -12.17260 -12.11733 -11.81268 -11.64060 -11.55845 -11.46094 -11.31752 -10.86649 -10.47992 -9.56101 -8.88663 -8.09149 -6.20452 1.41534 1.43101 1.55824 2.44429 3.18793 3.50562 3.71238 3.78218 3.92478 4.06842 4.43274 4.48982 4.59795 4.64946 4.70856 4.82170 4.84697 4.86638 4.90924 5.05413 5.10415 5.13080 5.19780 5.35875 5.41892 5.50685 5.55894 5.71029 5.86509 6.28661 6.30548 6.66122 6.70774 6.88814 6.97950 7.50023 8.96343 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067797 B = 0.006115 C = 0.005793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.895574 B = 4577.940581 C = 4832.356964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.217 3.783 3 H -0.003 1.003 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.683 5.683 13 C 0.081 3.919 14 H 0.049 0.951 15 C -0.144 4.144 16 C -0.108 4.108 17 C -0.082 4.082 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.858 5.858 21 C -0.103 4.103 22 H 0.028 0.972 23 H 0.033 0.967 24 H 0.057 0.943 25 H 0.260 0.740 26 H 0.331 0.669 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.069 0.931 33 H 0.349 0.651 34 H 0.345 0.655 35 H 0.066 0.934 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -0.441 15.746 15.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.015 0.985 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.193 1.193 10 H -0.205 1.205 11 H -0.207 1.207 12 N -0.312 5.312 13 C -0.030 4.030 14 H 0.067 0.933 15 C -0.184 4.184 16 C -0.146 4.146 17 C -0.101 4.101 18 H 0.091 0.909 19 C -0.057 4.057 20 N -0.389 5.389 21 C -0.142 4.142 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.084 0.916 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.865 -1.001 15.167 15.314 hybrid contribution -0.805 0.990 -0.865 1.542 sum 1.060 -0.011 14.301 14.341 Atomic orbital electron populations 1.22310 0.99915 0.99027 1.00271 1.18959 0.90143 0.92308 0.87756 0.98528 1.21536 1.30244 1.12388 0.91270 0.92875 1.25731 0.95495 0.95905 1.01930 1.70029 1.38210 1.24325 1.23847 0.85461 0.78069 0.78589 0.79201 1.19342 1.20545 1.20742 1.60784 1.57620 1.09238 1.03542 1.22264 0.94744 0.95211 0.90770 0.93286 1.23094 0.97415 1.01027 0.96833 1.22475 0.97573 0.99705 0.94835 1.21927 0.95100 0.99848 0.93260 0.90939 1.21744 0.97039 0.97778 0.89122 1.58688 1.07702 1.68257 1.04220 1.22137 0.97199 1.01337 0.93485 0.95291 0.94841 0.92440 0.93073 0.85131 0.92881 0.92081 0.90419 0.91184 0.94980 0.91234 0.83769 0.84194 0.91561 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.62 8.73 71.98 0.63 -6.99 16 2 C 0.22 11.25 2.57 44.17 0.11 11.36 16 3 H 0.00 -0.19 7.43 -2.39 -0.02 -0.20 16 4 C -0.52 -29.41 8.84 25.60 0.23 -29.19 16 5 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 6 C 0.01 0.41 5.30 84.65 0.45 0.86 16 7 N -0.92 -54.26 11.32 21.45 0.24 -54.02 16 8 Si 0.96 44.81 29.54 68.60 2.03 46.84 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 N -0.68 -29.45 5.94 -469.57 -2.79 -32.24 16 13 C 0.08 2.87 3.23 45.64 0.15 3.02 16 14 H 0.05 1.94 7.44 -2.39 -0.02 1.92 16 15 C -0.14 -4.36 4.94 31.67 0.16 -4.20 16 16 C -0.11 -2.46 5.69 31.89 0.18 -2.28 16 17 C -0.08 -1.93 3.09 -9.72 -0.03 -1.96 16 18 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 19 C 0.07 1.43 6.12 86.30 0.53 1.95 16 20 N -0.86 -14.29 9.62 -186.71 -1.80 -16.08 16 21 C -0.10 -2.99 6.17 31.32 0.19 -2.79 16 22 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 23 H 0.03 1.43 5.93 -2.39 -0.01 1.42 16 24 H 0.06 3.15 6.07 -2.38 -0.01 3.14 16 25 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 26 H 0.33 13.59 7.84 -89.69 -0.70 12.88 16 27 H 0.05 1.68 7.36 -2.39 -0.02 1.66 16 28 H 0.06 1.89 7.56 -2.39 -0.02 1.88 16 29 H 0.08 1.54 8.05 -2.39 -0.02 1.52 16 30 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 31 H 0.03 0.59 8.02 -2.39 -0.02 0.57 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.35 4.46 9.08 -89.70 -0.81 3.64 16 34 H 0.35 5.10 8.28 -89.69 -0.74 4.36 16 35 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 36 H 0.06 2.02 7.92 -2.38 -0.02 2.00 16 Total: -1.00 -61.25 279.75 -0.91 -62.16 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -1.19 Total: 23.56 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 2.59 Total: -30.22 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -4.35 Total: -102.34 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -61.25 -0.91 -62.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575914944.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.875 kcal (2) G-P(sol) polarization free energy of solvation -61.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds