Wall clock time and date at job start Sun Mar 29 2020 21:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46746 * 2 1 4 4 C 1.50690 * 109.47249 * 239.99921 * 2 1 3 5 5 H 1.08004 * 120.00035 * 240.00184 * 4 2 1 6 6 C 1.37875 * 120.00164 * 59.99842 * 4 2 1 7 7 N 1.31517 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00229 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47320 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 120.00157 * 8 6 4 11 11 H 1.48502 * 109.47393 * 239.99809 * 8 6 4 12 12 N 1.46907 * 109.47030 * 119.99608 * 2 1 3 13 13 C 1.46895 * 110.99995 * 274.99918 * 12 2 1 14 14 C 1.53005 * 109.47011 * 179.97438 * 13 12 2 15 15 H 1.08998 * 110.63910 * 51.85544 * 14 13 12 16 16 C 1.54932 * 110.72462 * 288.50597 * 14 13 12 17 17 N 1.48540 * 103.22417 * 204.22665 * 16 14 13 18 18 C 1.48115 * 105.86678 * 39.17200 * 17 16 14 19 19 C 1.54000 * 106.94761 * 334.74612 * 18 17 16 20 20 H 1.09002 * 110.31026 * 120.11128 * 19 18 17 21 21 C 1.53000 * 110.30761 * 242.18175 * 19 18 17 22 22 H 1.09002 * 109.47210 * 300.00056 * 1 2 3 23 23 H 1.09003 * 109.47750 * 60.00035 * 1 2 3 24 24 H 1.09001 * 109.47238 * 180.02562 * 1 2 3 25 25 H 0.96995 * 120.00497 * 180.02562 * 7 6 4 26 26 H 1.00904 * 110.99409 * 151.04806 * 12 2 1 27 27 H 1.09004 * 109.47012 * 60.00198 * 13 12 2 28 28 H 1.08998 * 109.47510 * 300.00681 * 13 12 2 29 29 H 1.09006 * 110.66684 * 322.65916 * 16 14 13 30 30 H 1.08995 * 110.66674 * 85.62496 * 16 14 13 31 31 H 1.00894 * 110.99560 * 278.69264 * 17 16 14 32 32 H 1.08997 * 109.99953 * 215.41588 * 18 17 16 33 33 H 1.09000 * 109.95079 * 94.04469 * 18 17 16 34 34 H 1.09007 * 109.46832 * 177.21170 * 21 19 18 35 35 H 1.08998 * 109.47110 * 297.20421 * 21 19 18 36 36 H 1.08994 * 109.47572 * 57.20956 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0078 9 1 3.1465 -2.2870 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 3.5233 -1.0557 3.3441 16 6 1.5214 -1.5195 4.0989 17 7 1.8860 -1.6899 5.5287 18 6 2.3046 -0.3504 6.0024 19 6 2.7913 0.4305 4.7675 20 1 2.1927 1.3309 4.6291 21 6 4.2697 0.7946 4.9183 22 1 -0.3634 0.5138 0.8900 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7088 1.1613 -3.4844 26 1 2.9173 -1.1204 1.0288 27 1 1.0870 0.6164 2.5525 28 1 2.7587 1.0463 2.1182 29 1 0.5245 -1.0888 4.0047 30 1 1.5803 -2.4697 3.5683 31 1 2.6333 -2.3595 5.6339 32 1 3.1156 -0.4468 6.7241 33 1 1.4583 0.1645 6.4573 34 1 4.6125 1.3027 4.0168 35 1 4.3957 1.4539 5.7771 36 1 4.8540 -0.1131 5.0682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575915494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:01 Heat of formation + Delta-G solvation = -14.352902 kcal Electronic energy + Delta-G solvation = -14489.491653 eV Core-core repulsion = 12200.556339 eV Total energy + Delta-G solvation = -2288.935314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.00106 -35.70154 -32.75902 -31.85134 -30.13460 -27.45281 -25.66661 -25.15955 -23.19412 -21.05748 -19.88347 -19.41513 -16.51804 -16.25930 -15.07045 -14.79543 -14.48446 -13.77837 -13.55383 -13.27204 -12.80176 -12.59080 -12.41348 -11.84363 -11.62050 -11.41620 -11.05662 -10.91392 -10.77562 -10.76925 -10.48112 -10.35776 -10.18696 -10.10797 -9.77470 -8.80984 -8.52568 -8.44521 -7.24676 -6.02962 -4.09419 3.28058 3.35937 3.40027 4.36079 4.40610 4.72537 4.78275 5.07980 5.28084 5.32667 5.41838 5.52679 5.62991 5.69357 5.77634 5.85547 6.01187 6.07916 6.15748 6.23268 6.36362 6.40261 6.61192 6.85480 6.90469 7.15154 7.24933 7.42956 7.51736 7.78168 7.90587 8.27981 8.39642 8.68110 9.01825 9.56690 11.03463 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052502 B = 0.006185 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.180415 B = 4526.341338 C = 4586.115127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.285 1.285 12 N -0.687 5.687 13 C 0.074 3.926 14 C -0.114 4.114 15 H 0.071 0.929 16 C 0.060 3.940 17 N -0.681 5.681 18 C 0.047 3.953 19 C -0.123 4.123 20 H 0.077 0.923 21 C -0.141 4.141 22 H 0.003 0.997 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.260 0.740 26 H 0.328 0.672 27 H 0.063 0.937 28 H 0.016 0.984 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.332 0.668 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.106 -1.074 13.123 13.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.017 0.983 4 C -0.556 4.556 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.529 5.529 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.211 1.211 12 N -0.318 5.318 13 C -0.057 4.057 14 C -0.134 4.134 15 H 0.089 0.911 16 C -0.069 4.069 17 N -0.307 5.307 18 C -0.083 4.083 19 C -0.143 4.143 20 H 0.095 0.905 21 C -0.198 4.198 22 H 0.022 0.978 23 H 0.098 0.902 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.145 0.855 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.146 0.854 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.696 -1.211 13.441 13.762 hybrid contribution 1.964 0.381 -1.626 2.578 sum 4.659 -0.830 11.814 12.727 Atomic orbital electron populations 1.21702 0.97883 0.99315 0.99273 1.19100 0.92632 0.92254 0.85693 0.98339 1.21307 1.31330 1.12440 0.90495 0.92215 1.24930 0.95071 0.95004 0.99076 1.69910 1.36737 1.22942 1.23340 0.86470 0.78613 0.79595 0.82883 1.19776 1.20939 1.21126 1.60732 1.31833 1.33168 1.06047 1.21844 0.99394 0.93738 0.90727 1.22791 0.99284 0.96633 0.94695 0.91098 1.23044 0.98565 0.99385 0.85937 1.62840 1.41687 1.07546 1.18588 1.22830 0.99220 0.89978 0.96308 1.22444 0.96897 0.99464 0.95536 0.90501 1.21823 0.95407 1.01020 1.01554 0.97779 0.90193 0.94957 0.92991 0.85531 0.91810 0.96563 0.90206 0.90275 0.85372 0.91961 0.90995 0.92523 0.92891 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.39 2.60 -68.87 -0.18 5.21 16 3 H 0.00 -0.03 7.80 -51.92 -0.40 -0.43 16 4 C -0.52 -14.28 8.59 -34.45 -0.30 -14.58 16 5 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16 8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.69 -14.57 6.22 -107.95 -0.67 -15.24 16 13 C 0.07 1.32 4.80 -3.82 -0.02 1.30 16 14 C -0.11 -1.63 2.76 -88.76 -0.25 -1.87 16 15 H 0.07 1.02 7.86 -51.93 -0.41 0.62 16 16 C 0.06 0.85 6.92 -1.90 -0.01 0.84 16 17 N -0.68 -8.52 7.52 -109.92 -0.83 -9.35 16 18 C 0.05 0.53 7.20 -2.63 -0.02 0.51 16 19 C -0.12 -1.50 3.16 -89.26 -0.28 -1.79 16 20 H 0.08 0.98 7.85 -51.93 -0.41 0.58 16 21 C -0.14 -1.52 8.88 37.16 0.33 -1.19 16 22 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 23 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.33 6.83 8.22 -39.29 -0.32 6.50 16 27 H 0.06 1.20 7.29 -51.93 -0.38 0.82 16 28 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16 29 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.33 3.66 8.92 -39.29 -0.35 3.31 16 32 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 285.24 15.07 4.30 4.30 Total: -1.00 -28.23 285.24 -8.34 -36.57 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.28 Total: 5.18 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.48 Total: -12.74 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -0.87 Total: -49.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.23 -8.34 -36.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575915494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.218 kcal (2) G-P(sol) polarization free energy of solvation -28.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds