Wall clock time and date at job start Sun Mar 29 2020 21:31:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09007 * 109.46746 * 2 1
4 4 C 1.50690 * 109.47249 * 239.99921 * 2 1 3
5 5 H 1.08004 * 120.00035 * 240.00184 * 4 2 1
6 6 C 1.37875 * 120.00164 * 59.99842 * 4 2 1
7 7 N 1.31517 * 120.00174 * 0.02562 * 6 4 2
8 8 Si 1.86798 * 120.00229 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47320 * 359.97438 * 8 6 4
10 10 H 1.48501 * 109.47269 * 120.00157 * 8 6 4
11 11 H 1.48502 * 109.47393 * 239.99809 * 8 6 4
12 12 N 1.46907 * 109.47030 * 119.99608 * 2 1 3
13 13 C 1.46895 * 110.99995 * 274.99918 * 12 2 1
14 14 C 1.53005 * 109.47011 * 179.97438 * 13 12 2
15 15 H 1.08998 * 110.63910 * 51.85544 * 14 13 12
16 16 C 1.54932 * 110.72462 * 288.50597 * 14 13 12
17 17 N 1.48540 * 103.22417 * 204.22665 * 16 14 13
18 18 C 1.48115 * 105.86678 * 39.17200 * 17 16 14
19 19 C 1.54000 * 106.94761 * 334.74612 * 18 17 16
20 20 H 1.09002 * 110.31026 * 120.11128 * 19 18 17
21 21 C 1.53000 * 110.30761 * 242.18175 * 19 18 17
22 22 H 1.09002 * 109.47210 * 300.00056 * 1 2 3
23 23 H 1.09003 * 109.47750 * 60.00035 * 1 2 3
24 24 H 1.09001 * 109.47238 * 180.02562 * 1 2 3
25 25 H 0.96995 * 120.00497 * 180.02562 * 7 6 4
26 26 H 1.00904 * 110.99409 * 151.04806 * 12 2 1
27 27 H 1.09004 * 109.47012 * 60.00198 * 13 12 2
28 28 H 1.08998 * 109.47510 * 300.00681 * 13 12 2
29 29 H 1.09006 * 110.66684 * 322.65916 * 16 14 13
30 30 H 1.08995 * 110.66674 * 85.62496 * 16 14 13
31 31 H 1.00894 * 110.99560 * 278.69264 * 17 16 14
32 32 H 1.08997 * 109.99953 * 215.41588 * 18 17 16
33 33 H 1.09000 * 109.95079 * 94.04469 * 18 17 16
34 34 H 1.09007 * 109.46832 * 177.21170 * 21 19 18
35 35 H 1.08998 * 109.47110 * 297.20421 * 21 19 18
36 36 H 1.08994 * 109.47572 * 57.20956 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8932 1.0278 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6532 -1.5885 -1.1312
6 6 1.6992 -0.2394 -2.4826
7 7 0.9435 0.8302 -2.6034
8 14 2.3213 -1.1204 -4.0078
9 1 3.1465 -2.2870 -3.6037
10 1 1.1660 -1.5867 -4.8160
11 1 3.1465 -0.1874 -4.8165
12 7 2.0196 -0.6924 1.1995
13 6 2.0824 0.2227 2.3469
14 6 2.5950 -0.5331 3.5746
15 1 3.5233 -1.0557 3.3441
16 6 1.5214 -1.5195 4.0989
17 7 1.8860 -1.6899 5.5287
18 6 2.3046 -0.3504 6.0024
19 6 2.7913 0.4305 4.7675
20 1 2.1927 1.3309 4.6291
21 6 4.2697 0.7946 4.9183
22 1 -0.3634 0.5138 0.8900
23 1 -0.3635 0.5138 -0.8900
24 1 -0.3634 -1.0277 0.0005
25 1 0.7088 1.1613 -3.4844
26 1 2.9173 -1.1204 1.0288
27 1 1.0870 0.6164 2.5525
28 1 2.7587 1.0463 2.1182
29 1 0.5245 -1.0888 4.0047
30 1 1.5803 -2.4697 3.5683
31 1 2.6333 -2.3595 5.6339
32 1 3.1156 -0.4468 6.7241
33 1 1.4583 0.1645 6.4573
34 1 4.6125 1.3027 4.0168
35 1 4.3957 1.4539 5.7771
36 1 4.8540 -0.1131 5.0682
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001575915494.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:31:01
Heat of formation + Delta-G solvation = -14.352902 kcal
Electronic energy + Delta-G solvation = -14489.491653 eV
Core-core repulsion = 12200.556339 eV
Total energy + Delta-G solvation = -2288.935314 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.158 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.00106 -35.70154 -32.75902 -31.85134 -30.13460 -27.45281 -25.66661 -25.15955
-23.19412 -21.05748 -19.88347 -19.41513 -16.51804 -16.25930 -15.07045 -14.79543
-14.48446 -13.77837 -13.55383 -13.27204 -12.80176 -12.59080 -12.41348 -11.84363
-11.62050 -11.41620 -11.05662 -10.91392 -10.77562 -10.76925 -10.48112 -10.35776
-10.18696 -10.10797 -9.77470 -8.80984 -8.52568 -8.44521 -7.24676 -6.02962
-4.09419 3.28058 3.35937 3.40027 4.36079 4.40610 4.72537 4.78275
5.07980 5.28084 5.32667 5.41838 5.52679 5.62991 5.69357 5.77634
5.85547 6.01187 6.07916 6.15748 6.23268 6.36362 6.40261 6.61192
6.85480 6.90469 7.15154 7.24933 7.42956 7.51736 7.78168 7.90587
8.27981 8.39642 8.68110 9.01825 9.56690 11.03463
Molecular weight = 212.16amu
Principal moments of inertia in cm(-1)
A = 0.052502 B = 0.006185 C = 0.006104
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 533.180415 B = 4526.341338 C = 4586.115127
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C 0.211 3.789
3 H -0.001 1.001
4 C -0.517 4.517
5 H 0.060 0.940
6 C 0.061 3.939
7 N -0.890 5.890
8 Si 0.896 3.104
9 H -0.273 1.273
10 H -0.283 1.283
11 H -0.285 1.285
12 N -0.687 5.687
13 C 0.074 3.926
14 C -0.114 4.114
15 H 0.071 0.929
16 C 0.060 3.940
17 N -0.681 5.681
18 C 0.047 3.953
19 C -0.123 4.123
20 H 0.077 0.923
21 C -0.141 4.141
22 H 0.003 0.997
23 H 0.079 0.921
24 H 0.031 0.969
25 H 0.260 0.740
26 H 0.328 0.672
27 H 0.063 0.937
28 H 0.016 0.984
29 H 0.080 0.920
30 H 0.079 0.921
31 H 0.332 0.668
32 H 0.062 0.938
33 H 0.072 0.928
34 H 0.056 0.944
35 H 0.052 0.948
36 H 0.051 0.949
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.106 -1.074 13.123 13.793
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.103 3.897
3 H 0.017 0.983
4 C -0.556 4.556
5 H 0.078 0.922
6 C -0.141 4.141
7 N -0.529 5.529
8 Si 0.724 3.276
9 H -0.198 1.198
10 H -0.209 1.209
11 H -0.211 1.211
12 N -0.318 5.318
13 C -0.057 4.057
14 C -0.134 4.134
15 H 0.089 0.911
16 C -0.069 4.069
17 N -0.307 5.307
18 C -0.083 4.083
19 C -0.143 4.143
20 H 0.095 0.905
21 C -0.198 4.198
22 H 0.022 0.978
23 H 0.098 0.902
24 H 0.050 0.950
25 H 0.070 0.930
26 H 0.145 0.855
27 H 0.082 0.918
28 H 0.034 0.966
29 H 0.098 0.902
30 H 0.097 0.903
31 H 0.146 0.854
32 H 0.080 0.920
33 H 0.090 0.910
34 H 0.075 0.925
35 H 0.071 0.929
36 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 2.696 -1.211 13.441 13.762
hybrid contribution 1.964 0.381 -1.626 2.578
sum 4.659 -0.830 11.814 12.727
Atomic orbital electron populations
1.21702 0.97883 0.99315 0.99273 1.19100 0.92632 0.92254 0.85693
0.98339 1.21307 1.31330 1.12440 0.90495 0.92215 1.24930 0.95071
0.95004 0.99076 1.69910 1.36737 1.22942 1.23340 0.86470 0.78613
0.79595 0.82883 1.19776 1.20939 1.21126 1.60732 1.31833 1.33168
1.06047 1.21844 0.99394 0.93738 0.90727 1.22791 0.99284 0.96633
0.94695 0.91098 1.23044 0.98565 0.99385 0.85937 1.62840 1.41687
1.07546 1.18588 1.22830 0.99220 0.89978 0.96308 1.22444 0.96897
0.99464 0.95536 0.90501 1.21823 0.95407 1.01020 1.01554 0.97779
0.90193 0.94957 0.92991 0.85531 0.91810 0.96563 0.90206 0.90275
0.85372 0.91961 0.90995 0.92523 0.92891 0.93008
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16
2 C 0.21 5.39 2.60 -68.87 -0.18 5.21 16
3 H 0.00 -0.03 7.80 -51.92 -0.40 -0.43 16
4 C -0.52 -14.28 8.59 -34.45 -0.30 -14.58 16
5 H 0.06 1.63 7.62 -52.48 -0.40 1.23 16
6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16
7 N -0.89 -25.67 11.32 55.43 0.63 -25.05 16
8 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16
9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16
10 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16
11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16
12 N -0.69 -14.57 6.22 -107.95 -0.67 -15.24 16
13 C 0.07 1.32 4.80 -3.82 -0.02 1.30 16
14 C -0.11 -1.63 2.76 -88.76 -0.25 -1.87 16
15 H 0.07 1.02 7.86 -51.93 -0.41 0.62 16
16 C 0.06 0.85 6.92 -1.90 -0.01 0.84 16
17 N -0.68 -8.52 7.52 -109.92 -0.83 -9.35 16
18 C 0.05 0.53 7.20 -2.63 -0.02 0.51 16
19 C -0.12 -1.50 3.16 -89.26 -0.28 -1.79 16
20 H 0.08 0.98 7.85 -51.93 -0.41 0.58 16
21 C -0.14 -1.52 8.88 37.16 0.33 -1.19 16
22 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16
23 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16
24 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16
25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16
26 H 0.33 6.83 8.22 -39.29 -0.32 6.50 16
27 H 0.06 1.20 7.29 -51.93 -0.38 0.82 16
28 H 0.02 0.31 8.05 -51.93 -0.42 -0.11 16
29 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16
30 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16
31 H 0.33 3.66 8.92 -39.29 -0.35 3.31 16
32 H 0.06 0.61 7.68 -51.93 -0.40 0.21 16
33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16
34 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16
35 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
LS Contribution 285.24 15.07 4.30 4.30
Total: -1.00 -28.23 285.24 -8.34 -36.57
By element:
Atomic # 1 Polarization: 11.45 SS G_CDS: -6.28 Total: 5.18 kcal
Atomic # 6 Polarization: -12.27 SS G_CDS: -0.48 Total: -12.74 kcal
Atomic # 7 Polarization: -48.76 SS G_CDS: -0.87 Total: -49.63 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -28.23 -8.34 -36.57 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001575915494.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 22.218 kcal
(2) G-P(sol) polarization free energy of solvation -28.226 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.009 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.353 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds