Wall clock time and date at job start Sun Mar 29 2020 21:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46746 * 2 1 4 4 C 1.50690 * 109.47249 * 239.99921 * 2 1 3 5 5 H 1.08004 * 120.00035 * 240.00184 * 4 2 1 6 6 C 1.37875 * 120.00164 * 59.99842 * 4 2 1 7 7 N 1.31517 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00229 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47320 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47269 * 120.00157 * 8 6 4 11 11 H 1.48502 * 109.47393 * 239.99809 * 8 6 4 12 12 N 1.46907 * 109.47030 * 119.99608 * 2 1 3 13 13 C 1.46895 * 110.99995 * 274.99918 * 12 2 1 14 14 C 1.53005 * 109.47011 * 179.97438 * 13 12 2 15 15 H 1.08998 * 110.63910 * 51.85544 * 14 13 12 16 16 C 1.54932 * 110.72462 * 288.50597 * 14 13 12 17 17 N 1.48540 * 103.22417 * 204.22665 * 16 14 13 18 18 C 1.48115 * 105.86678 * 39.17200 * 17 16 14 19 19 C 1.54000 * 106.94761 * 334.74612 * 18 17 16 20 20 H 1.09002 * 110.31026 * 120.11128 * 19 18 17 21 21 C 1.53000 * 110.30761 * 242.18175 * 19 18 17 22 22 H 1.09002 * 109.47210 * 300.00056 * 1 2 3 23 23 H 1.09003 * 109.47750 * 60.00035 * 1 2 3 24 24 H 1.09001 * 109.47238 * 180.02562 * 1 2 3 25 25 H 0.96995 * 120.00497 * 180.02562 * 7 6 4 26 26 H 1.00904 * 110.99409 * 151.04806 * 12 2 1 27 27 H 1.09004 * 109.47012 * 60.00198 * 13 12 2 28 28 H 1.08998 * 109.47510 * 300.00681 * 13 12 2 29 29 H 1.09006 * 110.66684 * 322.65916 * 16 14 13 30 30 H 1.08995 * 110.66674 * 85.62496 * 16 14 13 31 31 H 1.00894 * 110.99560 * 278.69264 * 17 16 14 32 32 H 1.08997 * 109.99953 * 215.41588 * 18 17 16 33 33 H 1.09000 * 109.95079 * 94.04469 * 18 17 16 34 34 H 1.09007 * 109.46832 * 177.21170 * 21 19 18 35 35 H 1.08998 * 109.47110 * 297.20421 * 21 19 18 36 36 H 1.08994 * 109.47572 * 57.20956 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4826 7 7 0.9435 0.8302 -2.6034 8 14 2.3213 -1.1204 -4.0078 9 1 3.1465 -2.2870 -3.6037 10 1 1.1660 -1.5867 -4.8160 11 1 3.1465 -0.1874 -4.8165 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5950 -0.5331 3.5746 15 1 3.5233 -1.0557 3.3441 16 6 1.5214 -1.5195 4.0989 17 7 1.8860 -1.6899 5.5287 18 6 2.3046 -0.3504 6.0024 19 6 2.7913 0.4305 4.7675 20 1 2.1927 1.3309 4.6291 21 6 4.2697 0.7946 4.9183 22 1 -0.3634 0.5138 0.8900 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.7088 1.1613 -3.4844 26 1 2.9173 -1.1204 1.0288 27 1 1.0870 0.6164 2.5525 28 1 2.7587 1.0463 2.1182 29 1 0.5245 -1.0888 4.0047 30 1 1.5803 -2.4697 3.5683 31 1 2.6333 -2.3595 5.6339 32 1 3.1156 -0.4468 6.7241 33 1 1.4583 0.1645 6.4573 34 1 4.6125 1.3027 4.0168 35 1 4.3957 1.4539 5.7771 36 1 4.8540 -0.1131 5.0682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575915494.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:01 Heat of formation + Delta-G solvation = -34.536789 kcal Electronic energy + Delta-G solvation = -14490.366892 eV Core-core repulsion = 12200.556339 eV Total energy + Delta-G solvation = -2289.810553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.12503 -37.50440 -34.64122 -32.91710 -31.74169 -29.08026 -27.35552 -26.58797 -24.61468 -22.31585 -21.65226 -20.63639 -18.53341 -17.29833 -16.89733 -16.19283 -16.02201 -15.25830 -15.04616 -14.59664 -14.40887 -13.76940 -13.60407 -13.39893 -12.99802 -12.89502 -12.78731 -12.66830 -12.45197 -12.22017 -12.14266 -11.92062 -11.60643 -11.47556 -11.37463 -10.87730 -10.59540 -9.51908 -9.04885 -8.14968 -6.29540 1.40610 1.42368 1.54281 2.40404 3.13574 3.30949 3.53090 3.75134 3.94842 4.09287 4.30506 4.40963 4.54990 4.61083 4.69844 4.74281 4.82010 4.86117 4.93468 5.05560 5.09319 5.17038 5.20976 5.23149 5.24583 5.42769 5.48375 5.65629 5.82179 5.84768 6.20452 6.45277 6.51772 6.76077 6.98935 7.41289 8.91151 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.052502 B = 0.006185 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.180415 B = 4526.341338 C = 4586.115127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 H -0.035 1.035 4 C -0.537 4.537 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.681 5.681 13 C 0.078 3.922 14 C -0.105 4.105 15 H 0.075 0.925 16 C 0.064 3.936 17 N -0.682 5.682 18 C 0.050 3.950 19 C -0.119 4.119 20 H 0.069 0.931 21 C -0.137 4.137 22 H 0.019 0.981 23 H 0.056 0.944 24 H 0.029 0.971 25 H 0.263 0.737 26 H 0.331 0.669 27 H 0.054 0.946 28 H 0.007 0.993 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.343 0.657 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -1.898 14.059 15.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.106 3.894 3 H -0.017 1.017 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.206 1.206 12 N -0.312 5.312 13 C -0.052 4.052 14 C -0.126 4.126 15 H 0.093 0.907 16 C -0.065 4.065 17 N -0.309 5.309 18 C -0.080 4.080 19 C -0.140 4.140 20 H 0.087 0.913 21 C -0.194 4.194 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.148 0.852 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.159 0.841 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.680 -2.043 14.403 15.006 hybrid contribution 1.647 0.669 -1.865 2.577 sum 5.327 -1.374 12.538 13.692 Atomic orbital electron populations 1.21526 0.97778 0.98869 0.98849 1.18917 0.92728 0.90628 0.87155 1.01718 1.21623 1.31632 1.12666 0.91583 0.92146 1.25771 0.95158 0.95679 1.02182 1.70037 1.37565 1.24159 1.24154 0.85404 0.78117 0.78571 0.78896 1.18966 1.20544 1.20632 1.60645 1.32010 1.33259 1.05251 1.21848 0.98865 0.93462 0.91032 1.22695 0.99241 0.96882 0.93754 0.90688 1.22884 0.97657 0.98788 0.87201 1.62789 1.42577 1.08525 1.17000 1.22856 1.00014 0.89023 0.96082 1.22415 0.98032 0.98686 0.94849 0.91297 1.21797 0.94127 1.01720 1.01782 0.96217 0.92555 0.95208 0.92822 0.85184 0.92795 0.97471 0.91855 0.90861 0.84124 0.89638 0.90973 0.93753 0.91066 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.19 71.98 0.66 -5.07 16 2 C 0.21 11.16 2.60 44.16 0.11 11.28 16 3 H -0.03 -2.01 7.80 -2.38 -0.02 -2.03 16 4 C -0.54 -29.81 8.59 25.60 0.22 -29.59 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.68 11.32 21.45 0.24 -53.44 16 8 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 9 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 N -0.68 -29.00 6.22 -495.45 -3.08 -32.08 16 13 C 0.08 2.81 4.80 86.31 0.41 3.23 16 14 C -0.11 -2.90 2.76 -9.59 -0.03 -2.93 16 15 H 0.07 2.04 7.86 -2.39 -0.02 2.02 16 16 C 0.06 1.77 6.92 86.65 0.60 2.37 16 17 N -0.68 -15.59 7.52 -501.67 -3.77 -19.36 16 18 C 0.05 1.00 7.20 86.41 0.62 1.62 16 19 C -0.12 -2.70 3.16 -9.91 -0.03 -2.74 16 20 H 0.07 1.68 7.85 -2.39 -0.02 1.66 16 21 C -0.14 -2.64 8.88 71.98 0.64 -2.00 16 22 H 0.02 0.89 7.45 -2.39 -0.02 0.88 16 23 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.33 13.73 8.22 -89.69 -0.74 12.99 16 27 H 0.05 2.04 7.29 -2.39 -0.02 2.02 16 28 H 0.01 0.27 8.05 -2.39 -0.02 0.25 16 29 H 0.06 1.95 7.94 -2.38 -0.02 1.94 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.34 6.66 8.92 -89.70 -0.80 5.86 16 32 H 0.09 1.36 7.68 -2.39 -0.02 1.34 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -59.77 285.24 -1.41 -61.18 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -0.49 Total: 20.79 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 3.66 Total: -22.77 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -6.61 Total: -104.88 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.77 -1.41 -61.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575915494.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.640 kcal (2) G-P(sol) polarization free energy of solvation -59.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds