Wall clock time and date at job start Sun Mar 29 2020 21:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08997 * 110.29350 * 52.86986 * 14 13 12 16 16 C 1.54379 * 110.32616 * 290.63691 * 14 13 12 17 17 N 1.48559 * 104.59990 * 217.25443 * 16 14 13 18 18 C 1.48561 * 104.22275 * 39.48059 * 17 16 14 19 19 C 1.54264 * 110.32344 * 175.00241 * 14 13 12 20 20 H 1.08994 * 110.32148 * 359.97438 * 19 14 13 21 21 C 1.53006 * 110.32022 * 237.89319 * 19 14 13 22 22 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 27 27 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 28 28 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 29 29 H 1.09007 * 110.41112 * 336.02975 * 16 14 13 30 30 H 1.09004 * 110.41499 * 98.47050 * 16 14 13 31 31 H 1.00900 * 111.00268 * 159.03659 * 17 16 14 32 32 H 1.08996 * 110.41078 * 201.74397 * 18 17 16 33 33 H 1.08997 * 110.51177 * 79.34485 * 18 17 16 34 34 H 1.08997 * 109.47532 * 60.00037 * 21 19 14 35 35 H 1.09005 * 109.46516 * 180.02562 * 21 19 14 36 36 H 1.09000 * 109.47253 * 299.99508 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 2.0011 -1.4318 -3.7403 16 6 4.0846 -0.8973 -3.3965 17 7 4.6743 -0.7341 -4.7502 18 6 4.0173 0.4841 -5.2901 19 6 2.5507 0.3758 -4.8202 20 1 2.1634 1.3601 -4.5571 21 6 1.6864 -0.2597 -5.9111 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7088 1.1613 3.4845 26 1 2.9173 -1.1204 -1.0288 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.5605 -0.2172 -2.6900 30 1 4.1861 -1.9290 -3.0595 31 1 5.6745 -0.6119 -4.6967 32 1 4.0681 0.4926 -6.3788 33 1 4.4820 1.3815 -4.8816 34 1 0.6725 -0.3990 -5.5363 35 1 1.6652 0.3929 -6.7839 36 1 2.1065 -1.2259 -6.1906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575915496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:04 Heat of formation + Delta-G solvation = -13.276698 kcal Electronic energy + Delta-G solvation = -14497.445501 eV Core-core repulsion = 12208.556855 eV Total energy + Delta-G solvation = -2288.888646 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.96942 -35.67395 -32.76988 -31.89231 -30.13952 -27.38523 -25.87864 -25.17470 -23.29879 -20.88968 -19.71533 -19.36186 -16.78232 -16.02900 -15.29795 -14.87913 -14.29837 -13.57291 -13.38386 -13.22228 -13.09336 -12.86378 -12.11158 -11.83190 -11.75204 -11.45615 -11.05511 -10.84701 -10.79683 -10.63577 -10.53210 -10.30414 -10.15802 -10.08156 -9.74578 -8.81722 -8.55387 -8.46807 -7.24927 -6.02226 -4.08844 3.31007 3.35455 3.38313 4.35399 4.40446 4.73627 4.81874 5.01428 5.28794 5.33144 5.51231 5.57461 5.61983 5.75440 5.77750 5.86956 6.03010 6.06198 6.17528 6.22175 6.32604 6.49419 6.60347 6.84815 6.90629 7.15465 7.25326 7.32025 7.52439 7.78386 7.91125 8.28596 8.40891 8.69136 9.02101 9.57098 11.04090 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050293 B = 0.006478 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.600844 B = 4321.312826 C = 4662.442457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H -0.001 1.001 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.069 3.931 14 C -0.084 4.084 15 H 0.087 0.913 16 C 0.039 3.961 17 N -0.667 5.667 18 C 0.038 3.962 19 C -0.094 4.094 20 H 0.074 0.926 21 C -0.137 4.137 22 H 0.031 0.969 23 H 0.080 0.920 24 H 0.003 0.997 25 H 0.261 0.739 26 H 0.329 0.671 27 H 0.064 0.936 28 H 0.015 0.985 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.331 0.669 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.394 -0.130 -12.881 13.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.103 3.897 3 H 0.016 0.984 4 C -0.557 4.557 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.062 4.062 14 C -0.104 4.104 15 H 0.105 0.895 16 C -0.091 4.091 17 N -0.295 5.295 18 C -0.091 4.091 19 C -0.114 4.114 20 H 0.092 0.908 21 C -0.194 4.194 22 H 0.050 0.950 23 H 0.098 0.902 24 H 0.022 0.978 25 H 0.071 0.929 26 H 0.146 0.854 27 H 0.082 0.918 28 H 0.033 0.967 29 H 0.058 0.942 30 H 0.100 0.900 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.277 -0.770 -13.255 13.676 hybrid contribution 1.513 0.939 1.692 2.456 sum 4.790 0.169 -11.563 12.517 Atomic orbital electron populations 1.21707 0.97907 0.99330 0.99271 1.19093 0.92637 0.92240 0.85697 0.98353 1.21237 1.31502 1.12492 0.90515 0.92301 1.24927 0.95053 0.94996 0.99046 1.69891 1.36622 1.22886 1.23548 0.86581 0.79038 0.79824 0.82067 1.20359 1.21290 1.20153 1.60742 1.31917 1.33160 1.06077 1.22001 0.99443 0.93722 0.91010 1.22038 0.95378 0.99100 0.93847 0.89500 1.23022 0.94877 1.01571 0.89590 1.63721 1.08864 1.36282 1.20604 1.22977 0.94615 0.91506 1.00019 1.21926 0.94612 0.99326 0.95499 0.90809 1.21779 0.99397 1.00808 0.97433 0.94952 0.90169 0.97770 0.92880 0.85426 0.91755 0.96673 0.94201 0.89973 0.85418 0.90522 0.94534 0.92585 0.93261 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.15 9.19 37.15 0.34 -2.81 16 2 C 0.21 5.44 2.60 -68.87 -0.18 5.26 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.41 8.59 -34.44 -0.30 -14.71 16 5 H 0.06 1.60 7.62 -52.48 -0.40 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.71 11.32 55.43 0.63 -25.09 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.69 -14.89 6.30 -107.96 -0.68 -15.57 16 13 C 0.07 1.25 4.65 -3.82 -0.02 1.24 16 14 C -0.08 -1.27 2.94 -89.24 -0.26 -1.53 16 15 H 0.09 1.39 7.71 -51.93 -0.40 0.99 16 16 C 0.04 0.54 6.29 -2.18 -0.01 0.53 16 17 N -0.67 -8.29 7.62 -109.65 -0.84 -9.13 16 18 C 0.04 0.45 7.02 -2.18 -0.02 0.43 16 19 C -0.09 -1.20 3.30 -89.23 -0.29 -1.50 16 20 H 0.07 0.95 7.71 -51.93 -0.40 0.55 16 21 C -0.14 -1.57 8.91 37.16 0.33 -1.24 16 22 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 25 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 26 H 0.33 6.93 7.54 -39.29 -0.30 6.63 16 27 H 0.06 1.21 7.44 -51.93 -0.39 0.82 16 28 H 0.02 0.29 7.89 -51.93 -0.41 -0.12 16 29 H 0.04 0.59 7.75 -51.93 -0.40 0.19 16 30 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.33 3.53 8.92 -39.29 -0.35 3.17 16 32 H 0.08 0.81 7.86 -51.93 -0.41 0.40 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 283.83 15.07 4.28 4.28 Total: -1.00 -28.56 283.83 -8.37 -36.93 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.23 Total: 4.90 kcal Atomic # 6 Polarization: -12.19 SS G_CDS: -0.50 Total: -12.70 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.89 Total: -49.78 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.56 -8.37 -36.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575915496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.653 kcal (2) G-P(sol) polarization free energy of solvation -28.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds