Wall clock time and date at job start Sun Mar 29 2020 21:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.50692 * 109.47298 * 120.00156 * 2 1 3 5 5 H 1.08004 * 120.00412 * 119.99885 * 4 2 1 6 6 C 1.37879 * 120.00142 * 300.00195 * 4 2 1 7 7 N 1.31514 * 119.99996 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00298 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46970 * 59.99698 * 8 6 4 10 10 H 1.48495 * 109.47163 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47139 * 300.00207 * 8 6 4 12 12 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 13 13 C 1.46905 * 110.99870 * 84.99904 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 H 1.08997 * 110.29350 * 52.86986 * 14 13 12 16 16 C 1.54379 * 110.32616 * 290.63691 * 14 13 12 17 17 N 1.48559 * 104.59990 * 217.25443 * 16 14 13 18 18 C 1.48561 * 104.22275 * 39.48059 * 17 16 14 19 19 C 1.54264 * 110.32344 * 175.00241 * 14 13 12 20 20 H 1.08994 * 110.32148 * 359.97438 * 19 14 13 21 21 C 1.53006 * 110.32022 * 237.89319 * 19 14 13 22 22 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 25 25 H 0.97004 * 120.00312 * 179.97438 * 7 6 4 26 26 H 1.00901 * 111.00067 * 208.95080 * 12 2 1 27 27 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 28 28 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 29 29 H 1.09007 * 110.41112 * 336.02975 * 16 14 13 30 30 H 1.09004 * 110.41499 * 98.47050 * 16 14 13 31 31 H 1.00900 * 111.00268 * 159.03659 * 17 16 14 32 32 H 1.08996 * 110.41078 * 201.74397 * 18 17 16 33 33 H 1.08997 * 110.51177 * 79.34485 * 18 17 16 34 34 H 1.08997 * 109.47532 * 60.00037 * 21 19 14 35 35 H 1.09005 * 109.46516 * 180.02562 * 21 19 14 36 36 H 1.09000 * 109.47253 * 299.99508 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1204 4.0079 9 1 3.8064 -1.1210 4.0081 10 1 1.8259 -0.4208 5.2204 11 1 1.8258 -2.5204 4.0077 12 7 2.0196 -0.6925 -1.1995 13 6 2.0824 0.2227 -2.3469 14 6 2.5950 -0.5330 -3.5745 15 1 2.0011 -1.4318 -3.7403 16 6 4.0846 -0.8973 -3.3965 17 7 4.6743 -0.7341 -4.7502 18 6 4.0173 0.4841 -5.2901 19 6 2.5507 0.3758 -4.8202 20 1 2.1634 1.3601 -4.5571 21 6 1.6864 -0.2597 -5.9111 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.7088 1.1613 3.4845 26 1 2.9173 -1.1204 -1.0288 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.5605 -0.2172 -2.6900 30 1 4.1861 -1.9290 -3.0595 31 1 5.6745 -0.6119 -4.6967 32 1 4.0681 0.4926 -6.3788 33 1 4.4820 1.3815 -4.8816 34 1 0.6725 -0.3990 -5.5363 35 1 1.6652 0.3929 -6.7839 36 1 2.1065 -1.2259 -6.1906 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575915496.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:04 Heat of formation + Delta-G solvation = -33.793929 kcal Electronic energy + Delta-G solvation = -14498.335195 eV Core-core repulsion = 12208.556855 eV Total energy + Delta-G solvation = -2289.778340 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11958 -37.47857 -34.64688 -32.99329 -31.76216 -29.01404 -27.41351 -26.80810 -24.71582 -22.24221 -21.44646 -20.57035 -18.63655 -17.33998 -16.86143 -16.56456 -15.79839 -15.17344 -14.87265 -14.56569 -14.33352 -14.09727 -13.71581 -13.45665 -13.00377 -12.85018 -12.79507 -12.61998 -12.40406 -12.25875 -12.18762 -11.86414 -11.55169 -11.50315 -11.35980 -10.88218 -10.58312 -9.55720 -9.08404 -8.14718 -6.29533 1.41758 1.44087 1.51709 2.40571 3.13534 3.32239 3.51286 3.70654 3.90089 4.09963 4.28549 4.41591 4.48687 4.66569 4.67515 4.73568 4.76056 4.89731 4.92619 5.00680 5.05850 5.16755 5.22319 5.26903 5.29253 5.41472 5.48536 5.65666 5.79030 5.84302 6.20327 6.40047 6.46371 6.75824 6.98491 7.41113 8.90933 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.050293 B = 0.006478 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.600844 B = 4321.312826 C = 4662.442457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.214 3.786 3 H -0.034 1.034 4 C -0.540 4.540 5 H 0.060 0.940 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.283 1.283 11 H -0.271 1.271 12 N -0.685 5.685 13 C 0.074 3.926 14 C -0.078 4.078 15 H 0.078 0.922 16 C 0.042 3.958 17 N -0.667 5.667 18 C 0.040 3.960 19 C -0.094 4.094 20 H 0.072 0.928 21 C -0.132 4.132 22 H 0.028 0.972 23 H 0.057 0.943 24 H 0.020 0.980 25 H 0.263 0.737 26 H 0.332 0.668 27 H 0.057 0.943 28 H 0.008 0.992 29 H 0.031 0.969 30 H 0.079 0.921 31 H 0.343 0.657 32 H 0.095 0.905 33 H 0.040 0.960 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.152 -0.665 -13.729 14.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 H -0.016 1.016 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.195 1.195 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.316 5.316 13 C -0.056 4.056 14 C -0.098 4.098 15 H 0.097 0.903 16 C -0.088 4.088 17 N -0.296 5.296 18 C -0.089 4.089 19 C -0.114 4.114 20 H 0.091 0.909 21 C -0.189 4.189 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.026 0.974 29 H 0.049 0.951 30 H 0.097 0.903 31 H 0.159 0.841 32 H 0.113 0.887 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.049 -1.309 -14.128 14.755 hybrid contribution 1.272 1.138 1.906 2.559 sum 5.322 -0.171 -12.222 13.332 Atomic orbital electron populations 1.21539 0.97746 0.98875 0.98972 1.18918 0.92781 0.90658 0.87085 1.01611 1.21568 1.31879 1.12774 0.91636 0.92217 1.25766 0.95117 0.95666 1.02133 1.70021 1.37406 1.24069 1.24295 0.85517 0.78734 0.78662 0.78140 1.19514 1.20852 1.19579 1.60667 1.32142 1.33366 1.05413 1.22014 0.99123 0.93400 0.91085 1.21928 0.95746 0.98784 0.93297 0.90328 1.22907 0.94226 1.01126 0.90493 1.63705 1.09815 1.36879 1.19162 1.23021 0.93507 0.91292 1.01073 1.21950 0.95950 0.98744 0.94749 0.90912 1.21734 0.98670 1.00929 0.97584 0.95280 0.92443 0.96055 0.92780 0.85086 0.92406 0.97409 0.95110 0.90269 0.84069 0.88677 0.94118 0.93094 0.91277 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.81 9.19 71.98 0.66 -5.15 16 2 C 0.21 11.23 2.60 44.16 0.11 11.34 16 3 H -0.03 -1.95 7.80 -2.39 -0.02 -1.97 16 4 C -0.54 -30.19 8.59 25.60 0.22 -29.97 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -53.59 11.32 21.45 0.24 -53.35 16 8 Si 0.96 43.69 29.54 68.60 2.03 45.71 16 9 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.69 -29.78 6.30 -495.47 -3.12 -32.90 16 13 C 0.07 2.69 4.65 86.30 0.40 3.09 16 14 C -0.08 -2.28 2.94 -9.90 -0.03 -2.31 16 15 H 0.08 2.45 7.71 -2.39 -0.02 2.43 16 16 C 0.04 1.14 6.29 86.45 0.54 1.68 16 17 N -0.67 -15.18 7.62 -500.84 -3.82 -19.00 16 18 C 0.04 0.84 7.02 86.45 0.61 1.45 16 19 C -0.09 -2.25 3.30 -9.89 -0.03 -2.28 16 20 H 0.07 1.76 7.71 -2.39 -0.02 1.74 16 21 C -0.13 -2.74 8.91 71.98 0.64 -2.10 16 22 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 24 H 0.02 0.97 7.45 -2.39 -0.02 0.95 16 25 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.33 14.02 7.54 -89.69 -0.68 13.35 16 27 H 0.06 2.17 7.44 -2.39 -0.02 2.15 16 28 H 0.01 0.30 7.89 -2.39 -0.02 0.28 16 29 H 0.03 0.89 7.75 -2.38 -0.02 0.87 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.34 6.54 8.92 -89.69 -0.80 5.74 16 32 H 0.09 1.68 7.86 -2.39 -0.02 1.66 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -60.06 283.83 -1.52 -61.58 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.43 Total: 21.04 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.58 Total: -23.09 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -6.70 Total: -105.25 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -60.06 -1.52 -61.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575915496.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.788 kcal (2) G-P(sol) polarization free energy of solvation -60.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds