Wall clock time and date at job start Sun Mar 29 2020 21:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 C 1.53000 * 109.47029 * 119.99981 * 2 1 3 14 14 N 1.46902 * 109.47004 * 294.99456 * 13 2 1 15 15 C 1.46906 * 110.99678 * 179.97438 * 14 13 2 16 16 H 1.09003 * 112.84507 * 23.81370 * 15 14 13 17 17 C 1.53777 * 113.60998 * 155.00056 * 15 14 13 18 18 C 1.53779 * 87.07946 * 139.98394 * 17 15 14 19 19 H 1.08999 * 113.61653 * 89.11775 * 18 17 15 20 20 N 1.46902 * 113.61754 * 220.02196 * 18 17 15 21 21 C 1.53773 * 113.61720 * 252.50026 * 15 14 13 22 22 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 23 23 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 24 24 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 26 26 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 27 27 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47370 * 55.00030 * 13 2 1 29 29 H 1.09006 * 109.46810 * 174.99833 * 13 2 1 30 30 H 1.00899 * 110.99664 * 56.05688 * 14 13 2 31 31 H 1.08999 * 113.61972 * 254.52801 * 17 15 14 32 32 H 1.09001 * 113.61755 * 25.43659 * 17 15 14 33 33 H 1.00900 * 111.00316 * 180.02562 * 20 18 17 34 34 H 1.00901 * 110.99630 * 303.95219 * 20 18 17 35 35 H 1.08997 * 113.61704 * 334.57387 * 21 15 14 36 36 H 1.09004 * 113.61343 * 105.47087 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 1.6447 0.2771 -4.7994 9 14 2.9627 -1.9889 -3.9029 10 1 2.0235 -3.1333 -4.0189 11 1 3.8108 -1.9192 -5.1198 12 1 3.8252 -2.1755 -2.7085 13 6 2.0400 -0.7212 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1249 -0.6271 3.6672 16 1 2.9819 -1.2770 3.4904 17 6 2.3126 0.3302 4.8560 18 6 1.7191 -0.7784 5.7411 19 1 2.4645 -1.4708 6.1323 20 7 0.8040 -0.2787 6.7760 21 6 1.0024 -1.2921 4.4812 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 -1.2951 26 1 3.1263 -0.7996 -1.2056 27 1 1.8920 -0.0458 -5.6800 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2055 30 1 0.6530 0.1793 2.4753 31 1 3.3565 0.5531 5.0766 32 1 1.6908 1.2237 4.7995 33 1 0.4389 -1.0369 7.3326 34 1 1.2573 0.4104 7.3572 35 1 0.0224 -0.8423 4.3223 36 1 0.9887 -2.3790 4.3991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575940989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:27 Heat of formation + Delta-G solvation = 1.769386 kcal Electronic energy + Delta-G solvation = -14068.888893 eV Core-core repulsion = 11780.652694 eV Total energy + Delta-G solvation = -2288.236199 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.35551 -36.35487 -33.49844 -32.11449 -30.60275 -27.38320 -25.73253 -25.43928 -22.69896 -21.55623 -19.73470 -18.82229 -16.77796 -16.19716 -15.82698 -15.51041 -14.78592 -14.07173 -13.86483 -13.53694 -12.89790 -12.70117 -12.43905 -12.12742 -11.80850 -11.64611 -11.27116 -11.04312 -10.88765 -10.72759 -10.45844 -10.35475 -9.77264 -9.69844 -9.38140 -9.02657 -8.97869 -8.48765 -8.08303 -5.98980 -3.95708 3.33390 3.40830 3.44734 4.19020 4.40484 4.49553 4.60915 4.68775 4.85315 4.95041 5.33500 5.34738 5.67222 5.68726 5.72068 5.79109 5.91958 5.97547 6.09124 6.12853 6.23353 6.43125 6.50785 6.82536 6.95340 7.00970 7.10884 7.15334 7.32779 7.37440 7.52892 7.68002 7.86238 8.60922 9.06974 9.64055 11.14536 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066765 B = 0.005264 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.279884 B = 5317.901882 C = 5501.921557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.077 4.077 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.061 3.939 14 N -0.677 5.677 15 C 0.067 3.933 16 H 0.092 0.908 17 C -0.121 4.121 18 C 0.055 3.945 19 H 0.058 0.942 20 N -0.838 5.838 21 C -0.156 4.156 22 H 0.034 0.966 23 H 0.067 0.933 24 H 0.040 0.960 25 H 0.009 0.991 26 H 0.015 0.985 27 H 0.262 0.738 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.343 0.657 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.338 0.662 34 H 0.340 0.660 35 H 0.091 0.909 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 -3.663 20.261 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.095 4.095 3 H 0.090 0.910 4 C -0.046 4.046 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.067 4.067 14 N -0.307 5.307 15 C -0.044 4.044 16 H 0.110 0.890 17 C -0.160 4.160 18 C -0.056 4.056 19 H 0.076 0.924 20 N -0.368 5.368 21 C -0.196 4.196 22 H 0.053 0.947 23 H 0.086 0.914 24 H 0.059 0.941 25 H 0.027 0.973 26 H 0.033 0.967 27 H 0.071 0.929 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.163 0.837 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.109 0.891 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.545 -2.969 19.393 19.626 hybrid contribution 0.593 -2.091 0.507 2.231 sum 1.139 -5.060 19.900 20.564 Atomic orbital electron populations 1.21750 0.96244 1.00488 1.00826 1.21040 0.95227 1.00203 0.93069 0.91042 1.19604 0.95906 0.95674 0.93464 1.21147 1.35229 1.09539 0.89104 0.90813 1.25027 0.95674 0.96943 0.95959 1.69916 1.47295 1.39316 0.97987 0.86802 0.80655 0.84343 0.77604 1.20450 1.21492 1.19099 1.22197 1.00084 0.94565 0.89895 1.60489 1.19850 1.49412 1.00966 1.22830 0.97358 0.94889 0.89345 0.88964 1.23164 1.00541 0.97882 0.94365 1.22702 0.93984 0.97588 0.91367 0.92448 1.58852 1.40145 1.18291 1.19465 1.23769 0.99669 1.00190 0.95951 0.94685 0.91351 0.94102 0.97277 0.96712 0.92857 0.95853 0.91617 0.83709 0.91811 0.88872 0.85051 0.84709 0.89101 0.92145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 8.78 37.16 0.33 -2.22 16 2 C -0.08 -1.53 2.55 -90.62 -0.23 -1.77 16 3 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.64 8.96 -34.44 -0.31 -14.95 16 6 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 9 Si 0.88 22.02 27.47 -169.99 -4.67 17.36 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 13 C 0.06 1.02 4.99 -3.82 -0.02 1.01 16 14 N -0.68 -9.84 6.62 -105.87 -0.70 -10.54 16 15 C 0.07 0.82 4.18 -66.90 -0.28 0.54 16 16 H 0.09 1.11 7.87 -51.93 -0.41 0.70 16 17 C -0.12 -1.30 7.67 -25.92 -0.20 -1.49 16 18 C 0.06 0.52 4.96 -66.90 -0.33 0.19 16 19 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 20 N -0.84 -7.06 9.58 -3.98 -0.04 -7.09 16 21 C -0.16 -1.69 7.49 -25.92 -0.19 -1.88 16 22 H 0.03 0.56 6.68 -51.93 -0.35 0.21 16 23 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 26 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 1.11 8.13 -51.93 -0.42 0.69 16 30 H 0.34 4.85 6.44 -39.29 -0.25 4.60 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.34 2.34 9.08 -39.29 -0.36 1.98 16 34 H 0.34 2.39 9.07 -39.29 -0.36 2.04 16 35 H 0.09 1.06 7.82 -51.93 -0.41 0.66 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 286.34 15.07 4.32 4.32 Total: -1.00 -30.37 286.34 -7.94 -38.31 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.19 Total: 4.19 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -1.43 Total: -19.08 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: 0.03 Total: -45.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.37 -7.94 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575940989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.076 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds