Wall clock time and date at job start Sun Mar 29 2020 21:34:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.47110 * 2 1 4 4 C 1.52997 * 109.47085 * 239.99940 * 2 1 3 5 5 C 1.50706 * 109.47238 * 64.99687 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31514 * 120.00200 * 180.02562 * 7 5 4 9 9 Si 1.86802 * 120.00139 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47145 * 89.99836 * 9 7 5 11 11 H 1.48496 * 109.47547 * 210.00333 * 9 7 5 12 12 H 1.48499 * 109.47030 * 330.00237 * 9 7 5 13 13 C 1.53000 * 109.47029 * 119.99981 * 2 1 3 14 14 N 1.46902 * 109.47004 * 294.99456 * 13 2 1 15 15 C 1.46906 * 110.99678 * 179.97438 * 14 13 2 16 16 H 1.09003 * 112.84507 * 23.81370 * 15 14 13 17 17 C 1.53777 * 113.60998 * 155.00056 * 15 14 13 18 18 C 1.53779 * 87.07946 * 139.98394 * 17 15 14 19 19 H 1.08999 * 113.61653 * 89.11775 * 18 17 15 20 20 N 1.46902 * 113.61754 * 220.02196 * 18 17 15 21 21 C 1.53773 * 113.61720 * 252.50026 * 15 14 13 22 22 H 1.09004 * 109.46776 * 299.99721 * 1 2 3 23 23 H 1.08993 * 109.46967 * 59.99924 * 1 2 3 24 24 H 1.08997 * 109.46762 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 305.00000 * 4 2 1 26 26 H 1.09000 * 109.47611 * 185.00297 * 4 2 1 27 27 H 0.96999 * 120.00061 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.47370 * 55.00030 * 13 2 1 29 29 H 1.09006 * 109.46810 * 174.99833 * 13 2 1 30 30 H 1.00899 * 110.99664 * 56.05688 * 14 13 2 31 31 H 1.08999 * 113.61972 * 254.52801 * 17 15 14 32 32 H 1.09001 * 113.61755 * 25.43659 * 17 15 14 33 33 H 1.00900 * 111.00316 * 180.02562 * 20 18 17 34 34 H 1.00901 * 110.99630 * 303.95219 * 20 18 17 35 35 H 1.08997 * 113.61704 * 334.57387 * 21 15 14 36 36 H 1.09004 * 113.61343 * 105.47087 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0806 0.9745 -2.3757 7 6 1.9922 -0.4023 -3.7283 8 7 1.6447 0.2771 -4.7994 9 14 2.9627 -1.9889 -3.9029 10 1 2.0235 -3.1333 -4.0189 11 1 3.8108 -1.9192 -5.1198 12 1 3.8252 -2.1755 -2.7085 13 6 2.0400 -0.7212 1.2492 14 7 1.6515 0.0375 2.4456 15 6 2.1249 -0.6271 3.6672 16 1 2.9819 -1.2770 3.4904 17 6 2.3126 0.3302 4.8560 18 6 1.7191 -0.7784 5.7411 19 1 2.4645 -1.4708 6.1323 20 7 0.8040 -0.2787 6.7760 21 6 1.0024 -1.2921 4.4812 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.6054 -1.7198 -1.2951 26 1 3.1263 -0.7996 -1.2056 27 1 1.8920 -0.0458 -5.6800 28 1 1.6054 -1.7198 1.2952 29 1 3.1264 -0.7995 1.2055 30 1 0.6530 0.1793 2.4753 31 1 3.3565 0.5531 5.0766 32 1 1.6908 1.2237 4.7995 33 1 0.4389 -1.0369 7.3326 34 1 1.2573 0.4104 7.3572 35 1 0.0224 -0.8423 4.3223 36 1 0.9887 -2.3790 4.3991 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575940989.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:27 Heat of formation + Delta-G solvation = -20.876878 kcal Electronic energy + Delta-G solvation = -14069.870909 eV Core-core repulsion = 11780.652694 eV Total energy + Delta-G solvation = -2289.218215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.25755 -37.82992 -35.06494 -33.77099 -31.74977 -29.25775 -26.89665 -26.56434 -24.26054 -22.80627 -20.90602 -20.18457 -18.91319 -17.07076 -16.80268 -16.46515 -16.27223 -15.76444 -15.11998 -14.95305 -14.53762 -14.19051 -13.70214 -13.44135 -13.28523 -12.91646 -12.83914 -12.53965 -12.24536 -12.07317 -11.85281 -11.69833 -11.48877 -11.25747 -11.12847 -10.96444 -10.73083 -9.63948 -9.19489 -8.25374 -6.27864 1.36150 1.38307 1.50171 2.38477 3.09793 3.22574 3.62729 3.78052 3.85358 4.00636 4.07459 4.22211 4.28746 4.40025 4.56347 4.77655 4.82801 4.86702 4.93401 5.00204 5.04966 5.08750 5.24692 5.27286 5.34027 5.39309 5.56400 5.71610 5.73825 6.22552 6.32516 6.36236 6.54199 6.62460 6.79781 7.35703 8.91531 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.066765 B = 0.005264 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.279884 B = 5317.901882 C = 5501.921557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.073 4.073 3 H 0.051 0.949 4 C -0.006 4.006 5 C -0.520 4.520 6 H 0.033 0.967 7 C 0.001 3.999 8 N -0.955 5.955 9 Si 0.949 3.051 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.247 1.247 13 C 0.075 3.925 14 N -0.683 5.683 15 C 0.060 3.940 16 H 0.097 0.903 17 C -0.118 4.118 18 C 0.066 3.934 19 H 0.071 0.929 20 N -0.846 5.846 21 C -0.153 4.153 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.049 0.951 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.264 0.736 28 H 0.032 0.968 29 H 0.065 0.935 30 H 0.344 0.656 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.347 0.653 34 H 0.349 0.651 35 H 0.081 0.919 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.187 -5.493 22.375 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.092 4.092 3 H 0.069 0.931 4 C -0.044 4.044 5 C -0.558 4.558 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.192 1.192 11 H -0.212 1.212 12 H -0.171 1.171 13 C -0.054 4.054 14 N -0.314 5.314 15 C -0.051 4.051 16 H 0.115 0.885 17 C -0.157 4.157 18 C -0.046 4.046 19 H 0.089 0.911 20 N -0.378 5.378 21 C -0.193 4.193 22 H 0.082 0.918 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.084 0.916 30 H 0.165 0.835 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.100 0.900 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.296 -4.796 21.548 22.113 hybrid contribution 0.299 -1.412 -0.127 1.449 sum 1.595 -6.209 21.421 22.359 Atomic orbital electron populations 1.21658 0.95405 1.00970 1.00590 1.20911 0.95954 0.99012 0.93318 0.93062 1.19556 0.95977 0.95634 0.93207 1.21466 1.34366 1.08653 0.91303 0.94823 1.26012 0.96997 1.01044 0.95483 1.70076 1.49137 1.41660 0.98714 0.85672 0.79346 0.79448 0.78250 1.19238 1.21161 1.17061 1.21920 0.99897 0.94494 0.89080 1.60449 1.20068 1.49699 1.01188 1.22964 0.98021 0.95605 0.88504 0.88533 1.23105 1.00903 0.97580 0.94117 1.22594 0.93909 0.96886 0.91169 0.91092 1.58797 1.40136 1.18996 1.19842 1.23697 0.98756 1.00368 0.96431 0.91821 0.94685 0.93183 0.96475 0.96546 0.92675 0.94972 0.91640 0.83548 0.91088 0.90093 0.83961 0.83745 0.90041 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 8.78 71.98 0.63 -4.14 16 2 C -0.07 -2.89 2.55 -10.79 -0.03 -2.92 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C -0.01 -0.28 3.52 29.85 0.10 -0.17 16 5 C -0.52 -30.40 8.96 25.60 0.23 -30.17 16 6 H 0.03 2.17 7.30 -2.91 -0.02 2.15 16 7 C 0.00 0.04 5.47 84.65 0.46 0.50 16 8 N -0.95 -61.03 13.96 21.44 0.30 -60.73 16 9 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.25 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.08 2.36 4.99 86.30 0.43 2.79 16 14 N -0.68 -18.59 6.62 -488.85 -3.24 -21.83 16 15 C 0.06 1.31 4.18 45.44 0.19 1.50 16 16 H 0.10 2.05 7.87 -2.39 -0.02 2.03 16 17 C -0.12 -2.28 7.67 31.12 0.24 -2.04 16 18 C 0.07 1.07 4.96 45.44 0.23 1.30 16 19 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 20 N -0.85 -12.15 9.58 -166.50 -1.59 -13.74 16 21 C -0.15 -2.92 7.49 31.12 0.23 -2.69 16 22 H 0.06 1.96 6.68 -2.39 -0.02 1.94 16 23 H 0.03 1.50 6.95 -2.39 -0.02 1.49 16 24 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 26 H 0.02 0.77 7.20 -2.39 -0.02 0.75 16 27 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 2.07 8.13 -2.38 -0.02 2.05 16 30 H 0.34 9.10 6.44 -89.69 -0.58 8.52 16 31 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.35 3.91 9.08 -89.69 -0.81 3.09 16 34 H 0.35 4.07 9.07 -89.69 -0.81 3.26 16 35 H 0.08 1.73 7.82 -2.39 -0.02 1.71 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -65.84 286.34 -1.12 -66.96 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -1.19 Total: 18.50 kcal Atomic # 6 Polarization: -38.76 SS G_CDS: 2.72 Total: -36.04 kcal Atomic # 7 Polarization: -91.77 SS G_CDS: -4.53 Total: -96.30 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -65.84 -1.12 -66.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575940989.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.081 kcal (2) G-P(sol) polarization free energy of solvation -65.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds