Wall clock time and date at job start Sun Mar 29 2020 21:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 90.00043 * 9 7 5 11 11 H 1.48495 * 109.47415 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47390 * 330.00270 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08999 * 112.85001 * 336.20073 * 15 14 13 17 17 C 1.53778 * 113.61042 * 107.50376 * 15 14 13 18 18 C 1.53778 * 87.07994 * 139.97995 * 17 15 14 19 19 H 1.08998 * 113.61763 * 220.01796 * 18 17 15 20 20 N 1.46904 * 113.69014 * 89.12500 * 18 17 15 21 21 C 1.53780 * 113.61241 * 204.99996 * 15 14 13 22 22 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 23 23 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 26 26 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 27 27 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 29 29 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 30 30 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 31 31 H 1.08996 * 113.61443 * 254.52656 * 17 15 14 32 32 H 1.09007 * 113.61378 * 25.43518 * 17 15 14 33 33 H 1.00902 * 110.99958 * 82.46533 * 20 18 17 34 34 H 1.00900 * 111.00455 * 206.42065 * 20 18 17 35 35 H 1.08993 * 113.62010 * 334.57153 * 21 15 14 36 36 H 1.09003 * 113.61079 * 105.39503 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.5650 1.5431 -5.5817 11 1 1.3130 -0.3703 -6.3891 12 1 0.2283 1.2846 -4.9874 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.2889 -1.6960 3.5312 17 6 3.2992 0.0969 4.3465 18 6 2.6231 -0.2316 5.6881 19 1 2.6741 0.5806 6.4132 20 7 3.0285 -1.5260 6.2521 21 6 1.2945 -0.2852 4.9157 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1264 -0.7993 -1.2056 26 1 1.6055 -1.7198 -1.2951 27 1 2.9239 -1.8416 -4.7317 28 1 3.1264 -0.7993 1.2056 29 1 1.6054 -1.7197 1.2951 30 1 1.9880 0.9874 2.3967 31 1 4.2585 -0.4016 4.2075 32 1 3.3398 1.1640 4.1278 33 1 3.9029 -1.4459 6.7492 34 1 2.3069 -1.9028 6.8482 35 1 0.7870 0.6773 4.8525 36 1 0.6344 -1.0916 5.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575940992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:34 Heat of formation + Delta-G solvation = -0.595807 kcal Electronic energy + Delta-G solvation = -14048.244798 eV Core-core repulsion = 11759.906037 eV Total energy + Delta-G solvation = -2288.338762 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.31459 -36.13358 -33.41912 -31.99715 -30.33998 -26.75252 -25.69108 -25.19733 -23.03223 -21.92602 -19.54255 -18.59552 -16.35029 -16.14979 -15.63745 -15.29734 -14.52586 -14.32005 -14.03578 -13.26359 -12.80650 -12.40895 -12.24311 -12.01885 -11.47078 -11.39613 -11.23664 -10.86988 -10.80729 -10.72598 -10.40273 -10.24444 -10.10377 -9.64073 -9.09769 -8.93032 -8.78914 -8.28643 -7.94585 -5.93385 -3.94374 3.35730 3.41936 3.45552 4.19396 4.44658 4.51310 4.60006 4.76009 4.99770 5.22600 5.42306 5.46859 5.71024 5.78231 5.82991 5.94074 6.06166 6.17203 6.19420 6.24886 6.50653 6.65064 6.75536 6.97464 7.09782 7.18086 7.24589 7.27578 7.50878 7.73637 7.78849 7.91773 8.07344 8.51570 9.12161 9.68747 11.18204 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.073130 B = 0.004980 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.787752 B = 5620.877993 C = 5774.685781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.680 5.680 15 C 0.081 3.919 16 H 0.098 0.902 17 C -0.162 4.162 18 C 0.059 3.941 19 H 0.043 0.957 20 N -0.833 5.833 21 C -0.125 4.125 22 H 0.041 0.959 23 H 0.052 0.948 24 H 0.039 0.961 25 H 0.012 0.988 26 H 0.016 0.984 27 H 0.259 0.741 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.337 0.663 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.341 0.659 34 H 0.343 0.657 35 H 0.086 0.914 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 2.520 17.910 18.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.070 0.930 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.309 5.309 15 C -0.030 4.030 16 H 0.116 0.884 17 C -0.202 4.202 18 C -0.053 4.053 19 H 0.061 0.939 20 N -0.364 5.364 21 C -0.164 4.164 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.031 0.969 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.042 0.958 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.105 0.895 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.894 1.872 17.023 17.149 hybrid contribution 0.765 1.105 -0.007 1.344 sum -0.129 2.976 17.016 17.275 Atomic orbital electron populations 1.21584 0.95793 1.00547 1.00046 1.21206 0.95951 0.98857 0.94203 0.92958 1.19125 0.95904 0.95592 0.90467 1.21252 1.34497 1.08244 0.91027 0.92591 1.25021 0.95384 0.95090 0.99072 1.69967 1.39191 1.21240 1.23326 0.86634 0.78909 0.79806 0.82892 1.20796 1.21316 1.19889 1.22161 0.97152 0.97617 0.89484 1.60482 1.63359 1.05489 1.01574 1.22859 0.92525 0.98694 0.88890 0.88356 1.23723 0.99731 1.00457 0.96299 1.22282 0.97905 0.90178 0.94901 0.93894 1.58482 1.08054 1.26100 1.43717 1.23165 0.95221 1.02168 0.95804 0.93983 0.92859 0.94187 0.96945 0.96555 0.93132 0.95800 0.91648 0.84503 0.91292 0.89995 0.84622 0.84395 0.89545 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 2 C -0.08 -1.75 2.48 -90.62 -0.22 -1.98 16 3 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 5 C -0.51 -14.61 8.41 -34.44 -0.29 -14.90 16 6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16 9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.06 1.17 4.92 -3.83 -0.02 1.15 16 14 N -0.68 -10.25 6.07 -105.87 -0.64 -10.89 16 15 C 0.08 1.07 4.10 -66.90 -0.27 0.79 16 16 H 0.10 1.44 7.87 -51.93 -0.41 1.03 16 17 C -0.16 -1.84 7.50 -25.92 -0.19 -2.04 16 18 C 0.06 0.58 5.04 -66.90 -0.34 0.25 16 19 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 20 N -0.83 -7.40 9.47 -3.98 -0.04 -7.44 16 21 C -0.12 -1.38 7.67 -25.92 -0.20 -1.58 16 22 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 23 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16 24 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16 30 H 0.34 4.80 8.20 -39.29 -0.32 4.48 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16 33 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16 34 H 0.34 2.53 9.07 -39.29 -0.36 2.17 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 292.10 15.07 4.40 4.40 Total: -1.00 -30.22 292.10 -8.34 -38.56 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.35 Total: 3.45 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.43 Total: -18.36 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.06 Total: -45.02 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.22 -8.34 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575940992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.962 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds