Wall clock time and date at job start Sun Mar 29 2020 21:34:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09008 * 109.46731 * 2 1
4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3
5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1
6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2
7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2
8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4
10 10 H 1.48502 * 109.47203 * 90.00043 * 9 7 5
11 11 H 1.48495 * 109.47415 * 210.00145 * 9 7 5
12 12 H 1.48498 * 109.47390 * 330.00270 * 9 7 5
13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3
14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1
15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2
16 16 H 1.08999 * 112.85001 * 336.20073 * 15 14 13
17 17 C 1.53778 * 113.61042 * 107.50376 * 15 14 13
18 18 C 1.53778 * 87.07994 * 139.97995 * 17 15 14
19 19 H 1.08998 * 113.61763 * 220.01796 * 18 17 15
20 20 N 1.46904 * 113.69014 * 89.12500 * 18 17 15
21 21 C 1.53780 * 113.61241 * 204.99996 * 15 14 13
22 22 H 1.08998 * 109.47430 * 299.99947 * 1 2 3
23 23 H 1.08996 * 109.47271 * 60.00619 * 1 2 3
24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3
25 25 H 1.09001 * 109.47698 * 184.99641 * 4 2 1
26 26 H 1.09009 * 109.47010 * 304.99646 * 4 2 1
27 27 H 0.97000 * 120.00592 * 179.97438 * 8 7 5
28 28 H 1.09002 * 109.47153 * 175.00232 * 13 2 1
29 29 H 1.09001 * 109.46832 * 55.00423 * 13 2 1
30 30 H 1.00902 * 111.00582 * 303.95797 * 14 13 2
31 31 H 1.08996 * 113.61443 * 254.52656 * 17 15 14
32 32 H 1.09007 * 113.61378 * 25.43518 * 17 15 14
33 33 H 1.00902 * 110.99958 * 82.46533 * 20 18 17
34 34 H 1.00900 * 111.00455 * 206.42065 * 20 18 17
35 35 H 1.08993 * 113.62010 * 334.57153 * 21 15 14
36 36 H 1.09003 * 113.61079 * 105.39503 * 21 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0278 0.0000
4 6 2.0401 -0.7211 -1.2492
5 6 1.6413 0.0571 -2.4766
6 1 1.0805 0.9745 -2.3757
7 6 1.9933 -0.4017 -3.7283
8 7 2.6765 -1.5186 -3.8511
9 14 1.4996 0.5633 -5.2496
10 1 2.5650 1.5431 -5.5817
11 1 1.3130 -0.3703 -6.3891
12 1 0.2283 1.2846 -4.9874
13 6 2.0400 -0.7212 1.2492
14 7 1.6514 0.0375 2.4456
15 6 2.1248 -0.6270 3.6672
16 1 2.2889 -1.6960 3.5312
17 6 3.2992 0.0969 4.3465
18 6 2.6231 -0.2316 5.6881
19 1 2.6741 0.5806 6.4132
20 7 3.0285 -1.5260 6.2521
21 6 1.2945 -0.2852 4.9157
22 1 -0.3634 0.5138 0.8899
23 1 -0.3633 0.5137 -0.8900
24 1 -0.3633 -1.0278 -0.0005
25 1 3.1264 -0.7993 -1.2056
26 1 1.6055 -1.7198 -1.2951
27 1 2.9239 -1.8416 -4.7317
28 1 3.1264 -0.7993 1.2056
29 1 1.6054 -1.7197 1.2951
30 1 1.9880 0.9874 2.3967
31 1 4.2585 -0.4016 4.2075
32 1 3.3398 1.1640 4.1278
33 1 3.9029 -1.4459 6.7492
34 1 2.3069 -1.9028 6.8482
35 1 0.7870 0.6773 4.8525
36 1 0.6344 -1.0916 5.2352
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001575940992.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:34:34
Heat of formation + Delta-G solvation = -0.595807 kcal
Electronic energy + Delta-G solvation = -14048.244798 eV
Core-core repulsion = 11759.906037 eV
Total energy + Delta-G solvation = -2288.338762 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 212.158 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-39.31459 -36.13358 -33.41912 -31.99715 -30.33998 -26.75252 -25.69108 -25.19733
-23.03223 -21.92602 -19.54255 -18.59552 -16.35029 -16.14979 -15.63745 -15.29734
-14.52586 -14.32005 -14.03578 -13.26359 -12.80650 -12.40895 -12.24311 -12.01885
-11.47078 -11.39613 -11.23664 -10.86988 -10.80729 -10.72598 -10.40273 -10.24444
-10.10377 -9.64073 -9.09769 -8.93032 -8.78914 -8.28643 -7.94585 -5.93385
-3.94374 3.35730 3.41936 3.45552 4.19396 4.44658 4.51310 4.60006
4.76009 4.99770 5.22600 5.42306 5.46859 5.71024 5.78231 5.82991
5.94074 6.06166 6.17203 6.19420 6.24886 6.50653 6.65064 6.75536
6.97464 7.09782 7.18086 7.24589 7.27578 7.50878 7.73637 7.78849
7.91773 8.07344 8.51570 9.12161 9.68747 11.18204
Molecular weight = 212.16amu
Principal moments of inertia in cm(-1)
A = 0.073130 B = 0.004980 C = 0.004848
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 382.787752 B = 5620.877993 C = 5774.685781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C -0.083 4.083
3 H 0.052 0.948
4 C 0.027 3.973
5 C -0.512 4.512
6 H 0.056 0.944
7 C 0.055 3.945
8 N -0.897 5.897
9 Si 0.889 3.111
10 H -0.282 1.282
11 H -0.287 1.287
12 H -0.274 1.274
13 C 0.064 3.936
14 N -0.680 5.680
15 C 0.081 3.919
16 H 0.098 0.902
17 C -0.162 4.162
18 C 0.059 3.941
19 H 0.043 0.957
20 N -0.833 5.833
21 C -0.125 4.125
22 H 0.041 0.959
23 H 0.052 0.948
24 H 0.039 0.961
25 H 0.012 0.988
26 H 0.016 0.984
27 H 0.259 0.741
28 H 0.024 0.976
29 H 0.065 0.935
30 H 0.337 0.663
31 H 0.068 0.932
32 H 0.082 0.918
33 H 0.341 0.659
34 H 0.343 0.657
35 H 0.086 0.914
36 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.345 2.520 17.910 18.090
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C -0.102 4.102
3 H 0.070 0.930
4 C -0.011 4.011
5 C -0.550 4.550
6 H 0.074 0.926
7 C -0.146 4.146
8 N -0.537 5.537
9 Si 0.718 3.282
10 H -0.208 1.208
11 H -0.213 1.213
12 H -0.199 1.199
13 C -0.064 4.064
14 N -0.309 5.309
15 C -0.030 4.030
16 H 0.116 0.884
17 C -0.202 4.202
18 C -0.053 4.053
19 H 0.061 0.939
20 N -0.364 5.364
21 C -0.164 4.164
22 H 0.060 0.940
23 H 0.071 0.929
24 H 0.058 0.942
25 H 0.031 0.969
26 H 0.034 0.966
27 H 0.069 0.931
28 H 0.042 0.958
29 H 0.084 0.916
30 H 0.155 0.845
31 H 0.087 0.913
32 H 0.100 0.900
33 H 0.154 0.846
34 H 0.156 0.844
35 H 0.105 0.895
36 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges -0.894 1.872 17.023 17.149
hybrid contribution 0.765 1.105 -0.007 1.344
sum -0.129 2.976 17.016 17.275
Atomic orbital electron populations
1.21584 0.95793 1.00547 1.00046 1.21206 0.95951 0.98857 0.94203
0.92958 1.19125 0.95904 0.95592 0.90467 1.21252 1.34497 1.08244
0.91027 0.92591 1.25021 0.95384 0.95090 0.99072 1.69967 1.39191
1.21240 1.23326 0.86634 0.78909 0.79806 0.82892 1.20796 1.21316
1.19889 1.22161 0.97152 0.97617 0.89484 1.60482 1.63359 1.05489
1.01574 1.22859 0.92525 0.98694 0.88890 0.88356 1.23723 0.99731
1.00457 0.96299 1.22282 0.97905 0.90178 0.94901 0.93894 1.58482
1.08054 1.26100 1.43717 1.23165 0.95221 1.02168 0.95804 0.93983
0.92859 0.94187 0.96945 0.96555 0.93132 0.95800 0.91648 0.84503
0.91292 0.89995 0.84622 0.84395 0.89545 0.91435
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16
2 C -0.08 -1.75 2.48 -90.62 -0.22 -1.98 16
3 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16
4 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16
5 C -0.51 -14.61 8.41 -34.44 -0.29 -14.90 16
6 H 0.06 1.56 7.06 -52.49 -0.37 1.19 16
7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16
8 N -0.90 -27.42 13.29 55.43 0.74 -26.68 16
9 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16
10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16
13 C 0.06 1.17 4.92 -3.83 -0.02 1.15 16
14 N -0.68 -10.25 6.07 -105.87 -0.64 -10.89 16
15 C 0.08 1.07 4.10 -66.90 -0.27 0.79 16
16 H 0.10 1.44 7.87 -51.93 -0.41 1.03 16
17 C -0.16 -1.84 7.50 -25.92 -0.19 -2.04 16
18 C 0.06 0.58 5.04 -66.90 -0.34 0.25 16
19 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16
20 N -0.83 -7.40 9.47 -3.98 -0.04 -7.44 16
21 C -0.12 -1.38 7.67 -25.92 -0.20 -1.58 16
22 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16
23 H 0.05 1.14 6.95 -51.93 -0.36 0.77 16
24 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16
25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16
26 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16
27 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16
28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
29 H 0.07 1.22 8.13 -51.93 -0.42 0.80 16
30 H 0.34 4.80 8.20 -39.29 -0.32 4.48 16
31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
32 H 0.08 0.88 7.82 -51.93 -0.41 0.47 16
33 H 0.34 2.50 9.08 -39.29 -0.36 2.14 16
34 H 0.34 2.53 9.07 -39.29 -0.36 2.17 16
35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16
36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
LS Contribution 292.10 15.07 4.40 4.40
Total: -1.00 -30.22 292.10 -8.34 -38.56
By element:
Atomic # 1 Polarization: 9.80 SS G_CDS: -6.35 Total: 3.45 kcal
Atomic # 6 Polarization: -16.93 SS G_CDS: -1.43 Total: -18.36 kcal
Atomic # 7 Polarization: -45.07 SS G_CDS: 0.06 Total: -45.02 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -30.22 -8.34 -38.56 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001575940992.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.962 kcal
(2) G-P(sol) polarization free energy of solvation -30.221 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) -0.596 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds