Wall clock time and date at job start Sun Mar 29 2020 21:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46731 * 2 1 4 4 C 1.52994 * 109.47368 * 240.00275 * 2 1 3 5 5 C 1.50701 * 109.47248 * 64.99284 * 4 2 1 6 6 H 1.07997 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99825 * 179.97438 * 5 4 2 8 8 N 1.31509 * 120.00260 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99910 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47203 * 90.00043 * 9 7 5 11 11 H 1.48495 * 109.47415 * 210.00145 * 9 7 5 12 12 H 1.48498 * 109.47390 * 330.00270 * 9 7 5 13 13 C 1.52997 * 109.47242 * 119.99706 * 2 1 3 14 14 N 1.46899 * 109.47254 * 295.00236 * 13 2 1 15 15 C 1.46904 * 111.00029 * 179.97438 * 14 13 2 16 16 H 1.08999 * 112.85001 * 336.20073 * 15 14 13 17 17 C 1.53778 * 113.61042 * 107.50376 * 15 14 13 18 18 C 1.53778 * 87.07994 * 139.97995 * 17 15 14 19 19 H 1.08998 * 113.61763 * 220.01796 * 18 17 15 20 20 N 1.46904 * 113.69014 * 89.12500 * 18 17 15 21 21 C 1.53780 * 113.61241 * 204.99996 * 15 14 13 22 22 H 1.08998 * 109.47430 * 299.99947 * 1 2 3 23 23 H 1.08996 * 109.47271 * 60.00619 * 1 2 3 24 24 H 1.09008 * 109.46731 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47698 * 184.99641 * 4 2 1 26 26 H 1.09009 * 109.47010 * 304.99646 * 4 2 1 27 27 H 0.97000 * 120.00592 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.47153 * 175.00232 * 13 2 1 29 29 H 1.09001 * 109.46832 * 55.00423 * 13 2 1 30 30 H 1.00902 * 111.00582 * 303.95797 * 14 13 2 31 31 H 1.08996 * 113.61443 * 254.52656 * 17 15 14 32 32 H 1.09007 * 113.61378 * 25.43518 * 17 15 14 33 33 H 1.00902 * 110.99958 * 82.46533 * 20 18 17 34 34 H 1.00900 * 111.00455 * 206.42065 * 20 18 17 35 35 H 1.08993 * 113.62010 * 334.57153 * 21 15 14 36 36 H 1.09003 * 113.61079 * 105.39503 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0805 0.9745 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6765 -1.5186 -3.8511 9 14 1.4996 0.5633 -5.2496 10 1 2.5650 1.5431 -5.5817 11 1 1.3130 -0.3703 -6.3891 12 1 0.2283 1.2846 -4.9874 13 6 2.0400 -0.7212 1.2492 14 7 1.6514 0.0375 2.4456 15 6 2.1248 -0.6270 3.6672 16 1 2.2889 -1.6960 3.5312 17 6 3.2992 0.0969 4.3465 18 6 2.6231 -0.2316 5.6881 19 1 2.6741 0.5806 6.4132 20 7 3.0285 -1.5260 6.2521 21 6 1.2945 -0.2852 4.9157 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 -0.0005 25 1 3.1264 -0.7993 -1.2056 26 1 1.6055 -1.7198 -1.2951 27 1 2.9239 -1.8416 -4.7317 28 1 3.1264 -0.7993 1.2056 29 1 1.6054 -1.7197 1.2951 30 1 1.9880 0.9874 2.3967 31 1 4.2585 -0.4016 4.2075 32 1 3.3398 1.1640 4.1278 33 1 3.9029 -1.4459 6.7492 34 1 2.3069 -1.9028 6.8482 35 1 0.7870 0.6773 4.8525 36 1 0.6344 -1.0916 5.2352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575940992.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:33 Heat of formation + Delta-G solvation = -22.240946 kcal Electronic energy + Delta-G solvation = -14049.183402 eV Core-core repulsion = 11759.906037 eV Total energy + Delta-G solvation = -2289.277365 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.28218 -37.73667 -35.09627 -33.63708 -31.49719 -28.76654 -26.79109 -26.55442 -24.70316 -23.26018 -21.00149 -19.79314 -18.48176 -17.16564 -16.56864 -16.45695 -16.27156 -15.85294 -15.34528 -14.60819 -14.38928 -14.15860 -13.53127 -13.26661 -13.06424 -12.93416 -12.78664 -12.54111 -12.39410 -12.19062 -12.00244 -11.69449 -11.52826 -11.28321 -11.07559 -10.82688 -10.52818 -9.55582 -9.18196 -8.16589 -6.26128 1.40819 1.42168 1.53326 2.42971 3.16691 3.30709 3.47517 3.68761 3.88509 4.02982 4.13246 4.31518 4.41143 4.54125 4.62119 4.84425 4.90113 4.92379 4.94718 5.03647 5.13111 5.23013 5.28881 5.32367 5.47547 5.51383 5.57972 5.82108 5.89401 6.16600 6.30849 6.34618 6.58044 6.61451 6.89975 7.42244 8.95669 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.073130 B = 0.004980 C = 0.004848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.787752 B = 5620.877993 C = 5774.685781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.031 3.969 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.963 3.037 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.079 3.921 14 N -0.675 5.675 15 C 0.069 3.931 16 H 0.080 0.920 17 C -0.160 4.160 18 C 0.071 3.929 19 H 0.061 0.939 20 N -0.844 5.844 21 C -0.117 4.117 22 H 0.067 0.933 23 H 0.038 0.962 24 H 0.033 0.967 25 H -0.015 1.015 26 H -0.012 1.012 27 H 0.262 0.738 28 H 0.014 0.986 29 H 0.056 0.944 30 H 0.344 0.656 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.351 0.649 34 H 0.352 0.648 35 H 0.093 0.907 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 3.969 18.920 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.578 5.578 9 Si 0.787 3.213 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.050 4.050 14 N -0.305 5.305 15 C -0.041 4.041 16 H 0.098 0.902 17 C -0.200 4.200 18 C -0.041 4.041 19 H 0.078 0.922 20 N -0.377 5.377 21 C -0.156 4.156 22 H 0.086 0.914 23 H 0.057 0.943 24 H 0.052 0.948 25 H 0.003 0.997 26 H 0.007 0.993 27 H 0.071 0.929 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.163 0.837 31 H 0.077 0.923 32 H 0.110 0.890 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.111 0.889 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.582 3.328 18.067 18.439 hybrid contribution 1.008 0.607 -0.284 1.211 sum -0.574 3.935 17.783 18.222 Atomic orbital electron populations 1.21479 0.94658 1.00291 1.00539 1.21025 0.96741 0.98424 0.93138 0.92676 1.19024 0.94020 0.94688 0.92893 1.21648 1.34441 1.08588 0.92050 0.91989 1.25975 0.95238 0.96091 1.02719 1.70107 1.40364 1.23000 1.24292 0.85481 0.79047 0.78345 0.78395 1.19845 1.20930 1.18666 1.21836 0.96266 0.97163 0.89764 1.60453 1.63468 1.05619 1.00945 1.22939 0.94657 0.97800 0.88689 0.90196 1.23711 0.98497 1.00634 0.97132 1.22168 0.96336 0.91075 0.94501 0.92167 1.58444 1.08996 1.25792 1.44457 1.23115 0.95671 1.02472 0.94313 0.91360 0.94310 0.94819 0.99702 0.99343 0.92945 0.96786 0.92579 0.83720 0.92292 0.89018 0.83539 0.83319 0.88859 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 8.89 71.98 0.64 -3.79 16 2 C -0.07 -3.14 2.48 -10.80 -0.03 -3.17 16 3 H 0.05 2.29 8.14 -2.38 -0.02 2.27 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.53 8.41 25.60 0.22 -30.32 16 6 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 7 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 8 N -0.94 -58.33 13.29 21.45 0.28 -58.05 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 12 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.08 2.87 4.92 86.30 0.42 3.30 16 14 N -0.67 -19.51 6.07 -488.85 -2.97 -22.48 16 15 C 0.07 1.74 4.10 45.44 0.19 1.93 16 16 H 0.08 2.32 7.87 -2.39 -0.02 2.30 16 17 C -0.16 -3.37 7.50 31.12 0.23 -3.13 16 18 C 0.07 1.23 5.04 45.44 0.23 1.46 16 19 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 20 N -0.84 -13.34 9.47 -166.49 -1.58 -14.91 16 21 C -0.12 -2.32 7.67 31.12 0.24 -2.08 16 22 H 0.07 2.32 7.75 -2.39 -0.02 2.30 16 23 H 0.04 1.61 6.95 -2.39 -0.02 1.60 16 24 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 25 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 26 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 27 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 28 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 2.13 8.13 -2.39 -0.02 2.11 16 30 H 0.34 9.17 8.20 -89.69 -0.74 8.44 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.76 7.82 -2.38 -0.02 1.74 16 33 H 0.35 4.42 9.08 -89.69 -0.81 3.61 16 34 H 0.35 4.46 9.07 -89.69 -0.81 3.65 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -64.77 292.10 -0.80 -65.57 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -1.30 Total: 16.49 kcal Atomic # 6 Polarization: -36.43 SS G_CDS: 2.73 Total: -33.70 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -4.26 Total: -95.44 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.77 -0.80 -65.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575940992.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.330 kcal (2) G-P(sol) polarization free energy of solvation -64.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds