Wall clock time and date at job start Sun Mar 29 2020 21:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.52997 * 109.47236 * 239.99889 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 H 1.07998 * 120.00129 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99913 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99734 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.47294 * 60.00559 * 9 7 5 11 11 H 1.48503 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47431 * 300.00157 * 9 7 5 13 13 C 1.52997 * 109.47024 * 119.99412 * 2 1 3 14 14 N 1.46898 * 109.47390 * 295.00117 * 13 2 1 15 15 C 1.46898 * 110.99934 * 179.97438 * 14 13 2 16 16 C 1.53005 * 112.93817 * 50.33996 * 15 14 13 17 17 C 1.53936 * 113.73994 * 278.76789 * 15 14 13 18 18 N 1.48189 * 86.10327 * 221.96019 * 17 15 14 19 19 C 1.47959 * 90.79892 * 24.59829 * 18 17 15 20 20 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47403 * 300.00135 * 1 2 3 22 22 H 1.09001 * 109.46917 * 60.00677 * 1 2 3 23 23 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 24 24 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 25 25 H 0.97002 * 119.99768 * 179.97438 * 8 7 5 26 26 H 1.09003 * 109.46810 * 55.00222 * 13 2 1 27 27 H 1.08998 * 109.47247 * 175.00091 * 13 2 1 28 28 H 1.00902 * 110.99797 * 56.04735 * 14 13 2 29 29 H 1.08994 * 109.47081 * 69.66040 * 16 15 14 30 30 H 1.08997 * 109.47358 * 189.66848 * 16 15 14 31 31 H 1.09002 * 109.46728 * 309.66043 * 16 15 14 32 32 H 1.09003 * 113.75455 * 336.24011 * 17 15 14 33 33 H 1.09000 * 113.75964 * 107.59729 * 17 15 14 34 34 H 1.00901 * 111.07068 * 137.52286 * 18 17 15 35 35 H 1.09002 * 113.75893 * 221.08655 * 19 18 17 36 36 H 1.08996 * 113.85636 * 89.73486 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.6414 0.0570 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9933 -0.4018 -3.7283 8 7 2.6765 -1.5188 -3.8510 9 14 1.4997 0.5632 -5.2496 10 1 2.0919 1.9236 -5.1866 11 1 1.9947 -0.1370 -6.4620 12 1 0.0197 0.6698 -5.3096 13 6 2.0400 -0.7211 1.2493 14 7 1.6514 0.0376 2.4456 15 6 2.1247 -0.6269 3.6672 16 6 3.6101 -0.9898 3.6113 17 6 1.2216 -1.7830 4.1335 18 7 1.4249 -1.2552 5.5033 19 6 1.7111 0.0925 4.9638 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8901 23 1 1.6055 -1.7198 -1.2951 24 1 3.1264 -0.7994 -1.2055 25 1 2.9238 -1.8418 -4.7316 26 1 1.6054 -1.7197 1.2952 27 1 3.1263 -0.7993 1.2057 28 1 0.6528 0.1794 2.4753 29 1 4.2082 -0.0794 3.6495 30 1 3.8610 -1.6254 4.4605 31 1 3.8191 -1.5232 2.6841 32 1 0.1929 -1.7060 3.7815 33 1 1.6544 -2.7705 3.9733 34 1 0.5617 -1.2599 6.0256 35 1 2.5344 0.6007 5.4659 36 1 0.8270 0.7205 4.8547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575941667.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:04 Heat of formation + Delta-G solvation = 13.852490 kcal Electronic energy + Delta-G solvation = -14395.587602 eV Core-core repulsion = 12107.875366 eV Total energy + Delta-G solvation = -2287.712237 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.03824 -36.27386 -33.31786 -31.71933 -29.02547 -26.79559 -26.26954 -25.83311 -23.94075 -22.13476 -19.01062 -18.69711 -16.98080 -16.40232 -15.39015 -14.61612 -14.47075 -14.35889 -13.47941 -13.38776 -13.21571 -12.55475 -12.34496 -11.90536 -11.85829 -11.73998 -11.43242 -11.01976 -10.87626 -10.79238 -10.45915 -10.32415 -10.14039 -9.71309 -9.23083 -9.07993 -8.95528 -8.31983 -8.10313 -5.96776 -3.98037 3.34953 3.39391 3.41818 3.94207 4.25398 4.48427 4.60173 4.82972 5.15333 5.20506 5.38940 5.58669 5.60145 5.75124 5.78501 5.81147 5.94162 5.96585 5.99830 6.05730 6.23041 6.32030 6.46179 6.57336 6.95349 7.05170 7.10102 7.17449 7.36879 7.62260 7.70496 7.86580 8.03325 8.47108 9.08057 9.65290 11.14717 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.067163 B = 0.005664 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.798956 B = 4942.691043 C = 5095.931388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.028 3.972 5 C -0.514 4.514 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.093 3.907 16 C -0.124 4.124 17 C -0.030 4.030 18 N -0.633 5.633 19 C 0.013 3.987 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.063 0.937 23 H 0.014 0.986 24 H 0.015 0.985 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.072 0.928 28 H 0.338 0.662 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.316 0.684 35 H 0.090 0.910 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.807 1.116 14.889 15.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.104 4.104 3 H 0.083 0.917 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.307 5.307 15 C 0.001 3.999 16 C -0.181 4.181 17 C -0.163 4.163 18 N -0.257 5.257 19 C -0.118 4.118 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.034 0.966 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.091 0.909 28 H 0.157 0.843 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.438 1.107 15.001 15.110 hybrid contribution -1.874 0.045 -1.188 2.219 sum -3.312 1.153 13.812 14.251 Atomic orbital electron populations 1.21743 0.96799 1.00369 1.00185 1.21240 0.94772 1.00121 0.94249 0.91663 1.19101 0.96142 0.95339 0.90326 1.21200 1.34736 1.08265 0.91011 0.92647 1.25015 0.95316 0.95087 0.99075 1.69955 1.39006 1.21223 1.23482 0.86693 0.78834 0.80164 0.82503 1.20263 1.21368 1.20338 1.22169 1.00712 0.94480 0.89135 1.60481 1.19114 1.49928 1.01209 1.22701 0.96085 0.91411 0.89736 1.21569 0.92297 1.01877 1.02390 1.24640 0.99563 1.01432 0.90634 1.66862 1.35291 1.11440 1.12132 1.23921 1.01154 0.92122 0.94586 0.94062 0.95140 0.91842 0.96779 0.96647 0.93041 0.95759 0.90919 0.84255 0.91728 0.91549 0.91631 0.91863 0.89509 0.87227 0.89203 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 8.77 37.16 0.33 -2.15 16 2 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 3 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 13 C 0.06 1.09 4.52 -3.83 -0.02 1.07 16 14 N -0.68 -9.84 6.44 -101.15 -0.65 -10.49 16 15 C 0.09 1.18 1.25 -133.28 -0.17 1.02 16 16 C -0.12 -1.57 8.84 37.16 0.33 -1.25 16 17 C -0.03 -0.35 8.03 -2.63 -0.02 -0.37 16 18 N -0.63 -6.93 8.39 -116.65 -0.98 -7.91 16 19 C 0.01 0.14 8.26 -2.76 -0.02 0.12 16 20 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16 22 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 23 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 27 H 0.07 1.30 6.28 -51.93 -0.33 0.97 16 28 H 0.34 4.65 6.86 -39.29 -0.27 4.38 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.79 8.00 -51.93 -0.42 0.38 16 31 H 0.06 0.89 6.12 -51.93 -0.32 0.57 16 32 H 0.06 0.71 8.06 -51.93 -0.42 0.29 16 33 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.32 2.90 8.92 -39.29 -0.35 2.55 16 35 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 285.84 15.07 4.31 4.31 Total: -1.00 -29.32 285.84 -8.03 -37.35 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.11 Total: 2.40 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -0.32 Total: -16.08 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.89 Total: -44.67 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.32 -8.03 -37.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575941667.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.204 kcal (2) G-P(sol) polarization free energy of solvation -29.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds