Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 115.55013 * 2 1 4 4 C 1.53073 * 117.49647 * 214.26727 * 2 1 3 5 5 C 1.52998 * 59.98639 * 252.51792 * 4 2 1 6 6 C 1.50700 * 117.50366 * 107.50080 * 5 4 2 7 7 O 1.20826 * 119.99614 * 291.25548 * 6 5 4 8 8 O 1.34223 * 120.00327 * 111.25447 * 6 5 4 9 9 C 1.50706 * 117.49554 * 252.50047 * 5 4 2 10 10 O 1.21288 * 120.00284 * 68.74837 * 9 5 4 11 11 N 1.34777 * 119.99730 * 248.74009 * 9 5 4 12 12 C 1.37095 * 119.99910 * 179.97438 * 11 9 5 13 13 H 1.08005 * 119.99959 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00053 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 269.99889 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00409 * 16 14 12 19 19 H 1.48498 * 109.47011 * 150.00030 * 16 14 12 20 20 H 1.08997 * 109.47658 * 274.33306 * 1 2 3 21 21 H 1.09002 * 109.47375 * 34.33268 * 1 2 3 22 22 H 1.09003 * 109.47484 * 154.33117 * 1 2 3 23 23 H 1.08994 * 117.51666 * 145.04056 * 4 2 1 24 24 H 1.09001 * 117.49083 * 359.97438 * 4 2 1 25 25 H 0.96698 * 117.00542 * 180.02562 * 8 6 5 26 26 H 0.96996 * 119.99887 * 0.02562 * 11 9 5 27 27 H 0.97001 * 119.99781 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7645 5 6 2.2364 -1.1207 0.7654 6 6 1.3719 -2.1398 1.4621 7 8 0.1683 -2.0516 1.4043 8 8 1.9390 -3.1453 2.1469 9 6 3.5292 -0.7806 1.4612 10 8 3.9709 0.3475 1.4025 11 7 4.1945 -1.7299 2.1487 12 6 5.3709 -1.4206 2.7812 13 1 5.7642 -0.4161 2.7288 14 6 6.0570 -2.3994 3.4895 15 7 5.5786 -3.6218 3.5528 16 14 7.6595 -1.9778 4.3519 17 1 8.7959 -2.2046 3.4233 18 1 7.6374 -0.5526 4.7685 19 1 7.8191 -2.8411 5.5496 20 1 -0.3634 0.0776 1.0247 21 1 -0.3634 0.8486 -0.5796 22 1 -0.3634 -0.9262 -0.4452 23 1 3.1719 -0.8771 -1.2678 24 1 1.6113 -1.8602 -1.2668 25 1 1.3437 -3.7745 2.5767 26 1 3.8414 -2.6321 2.1954 27 1 4.7463 -3.8405 3.1053 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594225697.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = -104.919176 kcal Electronic energy + Delta-G solvation = -14471.129940 eV Core-core repulsion = 11808.882526 eV Total energy + Delta-G solvation = -2662.247414 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.63390 -38.39078 -36.84804 -35.42577 -34.20801 -31.10451 -28.75853 -25.74829 -24.20626 -21.89881 -20.66274 -19.44301 -18.33373 -17.65758 -16.83097 -15.58417 -14.98990 -14.57067 -14.25952 -13.86120 -13.67158 -13.10811 -12.90626 -12.44310 -12.24644 -11.42400 -11.33220 -11.17366 -11.00686 -10.44539 -10.23541 -10.11648 -9.95715 -9.74897 -9.56312 -8.55884 -8.06263 -6.79384 -3.91174 2.22308 3.04436 3.28533 3.33822 3.53259 3.57693 4.07165 4.20268 4.51190 4.87328 4.98967 5.25618 5.41099 5.51113 5.53163 5.82515 5.99710 6.02464 6.24695 6.29207 6.52997 6.72032 7.77510 8.04405 8.10282 8.58843 8.73624 9.46633 9.84740 10.64292 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.048029 B = 0.009358 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.835506 B = 2991.413120 C = 3387.500609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 H 0.128 0.872 4 C -0.129 4.129 5 C -0.162 4.162 6 C 0.523 3.477 7 O -0.514 6.514 8 O -0.506 6.506 9 C 0.469 3.531 10 O -0.585 6.585 11 N -0.552 5.552 12 C -0.386 4.386 13 H 0.101 0.899 14 C -0.006 4.006 15 N -0.893 5.893 16 Si 1.095 2.905 17 H -0.283 1.283 18 H -0.283 1.283 19 H -0.280 1.280 20 H 0.067 0.933 21 H 0.055 0.945 22 H 0.062 0.938 23 H 0.112 0.888 24 H 0.103 0.897 25 H 0.411 0.589 26 H 0.389 0.611 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.173 0.359 -5.189 8.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.106 4.106 3 H 0.146 0.854 4 C -0.167 4.167 5 C -0.167 4.167 6 C 0.366 3.634 7 O -0.403 6.403 8 O -0.318 6.318 9 C 0.254 3.746 10 O -0.471 6.471 11 N -0.191 5.191 12 C -0.515 4.515 13 H 0.118 0.882 14 C -0.210 4.210 15 N -0.532 5.532 16 Si 0.920 3.080 17 H -0.210 1.210 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.086 0.914 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.131 0.869 24 H 0.121 0.879 25 H 0.271 0.729 26 H 0.227 0.773 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.695 0.728 -4.446 7.262 hybrid contribution -1.823 -0.454 -0.546 1.957 sum -7.519 0.274 -4.992 9.029 Atomic orbital electron populations 1.21446 0.91459 1.01475 1.02641 1.22519 0.95620 0.94581 0.97916 0.85368 1.23229 1.03602 1.01452 0.88393 1.21253 0.98830 1.00423 0.96158 1.22137 0.86535 0.79529 0.75217 1.90670 1.15874 1.74118 1.59614 1.84443 1.45494 1.38351 1.63507 1.18218 0.84947 0.86187 0.85261 1.90524 1.69324 1.21071 1.66196 1.42109 1.21361 1.11374 1.44294 1.20663 0.99452 1.00529 1.30886 0.88161 1.26584 1.04822 0.92540 0.97038 1.70820 1.21471 1.19233 1.41641 0.83087 0.73031 0.75554 0.76296 1.20988 1.20837 1.20564 0.91394 0.92575 0.91948 0.86925 0.87855 0.72916 0.77296 0.92172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 8.43 37.15 0.31 -1.30 15 2 C -0.09 -1.44 5.92 -90.58 -0.54 -1.98 15 3 H 0.13 2.20 7.67 -51.93 -0.40 1.80 15 4 C -0.13 -2.01 9.59 -26.69 -0.26 -2.26 15 5 C -0.16 -3.13 2.56 -156.81 -0.40 -3.53 15 6 C 0.52 9.41 7.84 36.01 0.28 9.69 15 7 O -0.51 -9.23 13.87 -18.75 -0.26 -9.49 15 8 O -0.51 -8.37 10.51 -39.24 -0.41 -8.78 15 9 C 0.47 11.63 7.33 -10.98 -0.08 11.55 15 10 O -0.59 -16.28 15.83 5.55 0.09 -16.20 15 11 N -0.55 -14.46 5.10 -10.96 -0.06 -14.52 15 12 C -0.39 -11.00 9.68 -14.93 -0.14 -11.15 15 13 H 0.10 2.99 7.16 -52.48 -0.38 2.62 15 14 C -0.01 -0.17 5.50 -17.47 -0.10 -0.26 15 15 N -0.89 -25.04 13.68 55.50 0.76 -24.28 15 16 Si 1.09 24.14 29.92 -169.99 -5.09 19.05 15 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 15 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 20 H 0.07 1.06 7.26 -51.93 -0.38 0.68 15 21 H 0.06 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.06 0.87 7.02 -51.93 -0.36 0.51 15 23 H 0.11 1.73 8.14 -51.93 -0.42 1.31 15 24 H 0.10 1.35 8.05 -51.93 -0.42 0.94 15 25 H 0.41 4.55 9.10 45.56 0.41 4.97 15 26 H 0.39 9.53 3.89 -40.82 -0.16 9.37 15 27 H 0.27 7.27 6.78 -40.82 -0.28 7.00 15 LS Contribution 240.31 15.07 3.62 3.62 Total: -1.00 -33.46 240.31 -3.86 -37.32 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -1.59 Total: 12.52 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: -0.92 Total: 0.75 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.70 Total: -38.80 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.58 Total: -34.47 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.09 Total: 19.05 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -33.46 -3.86 -37.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594225697.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.595 kcal (2) G-P(sol) polarization free energy of solvation -33.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds