Wall clock time and date at job start Sun Mar 29 2020 21:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08994 * 115.55013 * 2 1 4 4 C 1.53073 * 117.49647 * 214.26727 * 2 1 3 5 5 C 1.52998 * 59.98639 * 252.51792 * 4 2 1 6 6 C 1.50700 * 117.50366 * 107.50080 * 5 4 2 7 7 O 1.20826 * 119.99614 * 291.25548 * 6 5 4 8 8 O 1.34223 * 120.00327 * 111.25447 * 6 5 4 9 9 C 1.50706 * 117.49554 * 252.50047 * 5 4 2 10 10 O 1.21288 * 120.00284 * 68.74837 * 9 5 4 11 11 N 1.34777 * 119.99730 * 248.74009 * 9 5 4 12 12 C 1.37095 * 119.99910 * 179.97438 * 11 9 5 13 13 H 1.08005 * 119.99959 * 0.02562 * 12 11 9 14 14 C 1.38950 * 120.00053 * 180.02562 * 12 11 9 15 15 N 1.31413 * 119.99930 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99918 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47118 * 269.99889 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00409 * 16 14 12 19 19 H 1.48498 * 109.47011 * 150.00030 * 16 14 12 20 20 H 1.08997 * 109.47658 * 274.33306 * 1 2 3 21 21 H 1.09002 * 109.47375 * 34.33268 * 1 2 3 22 22 H 1.09003 * 109.47484 * 154.33117 * 1 2 3 23 23 H 1.08994 * 117.51666 * 145.04056 * 4 2 1 24 24 H 1.09001 * 117.49083 * 359.97438 * 4 2 1 25 25 H 0.96698 * 117.00542 * 180.02562 * 8 6 5 26 26 H 0.96996 * 119.99887 * 0.02562 * 11 9 5 27 27 H 0.97001 * 119.99781 * 359.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2367 -1.1221 -0.7645 5 6 2.2364 -1.1207 0.7654 6 6 1.3719 -2.1398 1.4621 7 8 0.1683 -2.0516 1.4043 8 8 1.9390 -3.1453 2.1469 9 6 3.5292 -0.7806 1.4612 10 8 3.9709 0.3475 1.4025 11 7 4.1945 -1.7299 2.1487 12 6 5.3709 -1.4206 2.7812 13 1 5.7642 -0.4161 2.7288 14 6 6.0570 -2.3994 3.4895 15 7 5.5786 -3.6218 3.5528 16 14 7.6595 -1.9778 4.3519 17 1 8.7959 -2.2046 3.4233 18 1 7.6374 -0.5526 4.7685 19 1 7.8191 -2.8411 5.5496 20 1 -0.3634 0.0776 1.0247 21 1 -0.3634 0.8486 -0.5796 22 1 -0.3634 -0.9262 -0.4452 23 1 3.1719 -0.8771 -1.2678 24 1 1.6113 -1.8602 -1.2668 25 1 1.3437 -3.7745 2.5767 26 1 3.8414 -2.6321 2.1954 27 1 4.7463 -3.8405 3.1053 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594225697.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:52 Heat of formation + Delta-G solvation = -129.510614 kcal Electronic energy + Delta-G solvation = -14472.196305 eV Core-core repulsion = 11808.882526 eV Total energy + Delta-G solvation = -2663.313778 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.08996 -40.14798 -38.35281 -36.86202 -36.26517 -33.16643 -30.06340 -27.40748 -25.98607 -23.52071 -22.12197 -20.95797 -20.16169 -19.48463 -18.40106 -17.04640 -16.69698 -16.38634 -15.87061 -15.53720 -15.43848 -14.71236 -14.19289 -13.79101 -13.65681 -13.27789 -12.84608 -12.72659 -12.58344 -11.94699 -11.91068 -11.81046 -11.60889 -11.44116 -11.11246 -10.53079 -10.15006 -8.97196 -6.10999 0.83002 1.43356 1.54862 1.73270 1.83278 1.96103 2.38218 2.57061 2.80921 3.15052 3.43816 3.65208 3.94050 4.09191 4.30186 4.58365 4.65948 4.85167 4.92896 5.08462 5.30738 5.51495 5.57822 5.93871 6.51976 6.65037 6.83313 7.40057 7.84240 8.49931 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.048029 B = 0.009358 C = 0.008264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.835506 B = 2991.413120 C = 3387.500609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.080 4.080 3 H 0.117 0.883 4 C -0.103 4.103 5 C -0.193 4.193 6 C 0.529 3.471 7 O -0.513 6.513 8 O -0.514 6.514 9 C 0.469 3.531 10 O -0.623 6.623 11 N -0.564 5.564 12 C -0.419 4.419 13 H 0.076 0.924 14 C -0.038 4.038 15 N -0.907 5.907 16 Si 1.138 2.862 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.271 1.271 20 H 0.052 0.948 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.113 0.887 24 H 0.137 0.863 25 H 0.433 0.567 26 H 0.395 0.605 27 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.826 -0.057 -5.873 9.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.099 4.099 3 H 0.135 0.865 4 C -0.140 4.140 5 C -0.198 4.198 6 C 0.372 3.628 7 O -0.403 6.403 8 O -0.330 6.330 9 C 0.255 3.745 10 O -0.511 6.511 11 N -0.205 5.205 12 C -0.548 4.548 13 H 0.095 0.905 14 C -0.237 4.237 15 N -0.545 5.545 16 Si 0.957 3.043 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.196 1.196 20 H 0.071 0.929 21 H 0.103 0.897 22 H 0.087 0.913 23 H 0.131 0.869 24 H 0.155 0.845 25 H 0.297 0.703 26 H 0.235 0.765 27 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.388 0.278 -5.139 8.203 hybrid contribution -1.686 -0.298 -0.376 1.753 sum -8.074 -0.020 -5.515 9.778 Atomic orbital electron populations 1.21421 0.89343 1.03157 1.02284 1.22667 0.97039 0.93707 0.96442 0.86498 1.23436 1.03913 1.01205 0.85450 1.21163 0.97022 1.03362 0.98266 1.21761 0.86204 0.79579 0.75259 1.90671 1.15523 1.74346 1.59746 1.84375 1.46505 1.38645 1.63463 1.19097 0.86098 0.85280 0.83978 1.90485 1.70923 1.22545 1.67178 1.42191 1.21237 1.12090 1.44942 1.20690 1.01145 1.00031 1.32936 0.90547 1.27973 1.07202 0.91800 0.96741 1.70899 1.21674 1.19688 1.42215 0.82581 0.69979 0.75780 0.75936 1.19261 1.20182 1.19579 0.92900 0.89655 0.91284 0.86890 0.84487 0.70305 0.76508 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 8.43 71.98 0.61 -2.09 15 2 C -0.08 -2.49 5.92 -10.77 -0.06 -2.55 15 3 H 0.12 3.92 7.67 -2.39 -0.02 3.90 15 4 C -0.10 -2.95 9.59 30.62 0.29 -2.65 15 5 C -0.19 -7.29 2.56 -53.67 -0.14 -7.43 15 6 C 0.53 18.26 7.84 71.24 0.56 18.82 15 7 O -0.51 -17.35 13.87 21.96 0.30 -17.04 15 8 O -0.51 -16.47 10.51 -51.35 -0.54 -17.01 15 9 C 0.47 23.52 7.33 87.66 0.64 24.17 15 10 O -0.62 -35.51 15.83 -3.05 -0.05 -35.56 15 11 N -0.56 -30.05 5.10 -306.98 -1.56 -31.61 15 12 C -0.42 -24.41 9.68 84.04 0.81 -23.59 15 13 H 0.08 4.73 7.16 -2.91 -0.02 4.71 15 14 C -0.04 -2.06 5.50 84.93 0.47 -1.59 15 15 N -0.91 -50.69 13.68 21.66 0.30 -50.39 15 16 Si 1.14 48.18 29.92 68.60 2.05 50.23 15 17 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 18 H -0.28 -11.31 7.11 99.48 0.71 -10.61 15 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 15 20 H 0.05 1.53 7.26 -2.39 -0.02 1.52 15 21 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.07 1.69 7.02 -2.39 -0.02 1.67 15 23 H 0.11 3.25 8.14 -2.39 -0.02 3.23 15 24 H 0.14 3.04 8.05 -2.39 -0.02 3.02 15 25 H 0.43 8.94 9.10 -74.06 -0.67 8.27 15 26 H 0.40 19.58 3.89 -92.71 -0.36 19.22 15 27 H 0.26 14.38 6.78 -92.71 -0.63 13.75 15 Total: -1.00 -72.14 240.31 4.01 -68.13 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.33 Total: 30.17 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 3.18 Total: 3.08 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -1.27 Total: -82.00 kcal Atomic # 8 Polarization: -69.34 SS G_CDS: -0.28 Total: -69.62 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.05 Total: 50.23 kcal Total: -72.14 4.01 -68.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594225697.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.380 kcal (2) G-P(sol) polarization free energy of solvation -72.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds