Wall clock time and date at job start Sun Mar 29 2020 21:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99925 * 2 1 4 4 H 1.48493 * 109.47252 * 270.00148 * 3 2 1 5 5 H 1.48500 * 109.46916 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.46793 * 150.00034 * 3 2 1 7 7 C 1.37878 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99862 * 170.33485 * 7 2 1 9 9 C 1.50702 * 119.99875 * 350.32931 * 7 2 1 10 10 C 1.52998 * 115.55116 * 325.11963 * 9 7 2 11 11 N 1.46501 * 109.47041 * 306.39556 * 10 9 7 12 12 C 1.34782 * 119.99772 * 183.67949 * 11 10 9 13 13 O 1.21350 * 119.99995 * 5.78146 * 12 11 10 14 14 C 1.49435 * 119.99759 * 186.05388 * 12 11 10 15 15 O 1.21248 * 120.00156 * 354.63333 * 14 12 11 16 16 O 1.34539 * 119.99762 * 174.63628 * 14 12 11 17 17 C 1.52997 * 117.49572 * 110.79194 * 9 7 2 18 18 C 1.53005 * 117.49489 * 179.45064 * 9 7 2 19 19 H 0.96997 * 120.00156 * 5.02912 * 1 2 3 20 20 H 1.08998 * 109.47189 * 186.39512 * 10 9 7 21 21 H 1.09003 * 109.47035 * 66.39385 * 10 9 7 22 22 H 0.96995 * 119.99999 * 3.68135 * 11 10 9 23 23 H 0.96698 * 117.00030 * 179.97438 * 16 14 12 24 24 H 1.08995 * 117.49749 * 214.99660 * 17 9 7 25 25 H 1.09003 * 117.50185 * 0.02562 * 17 9 7 26 26 H 1.08996 * 117.49684 * 359.97438 * 18 9 7 27 27 H 1.09001 * 117.49355 * 144.97340 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0731 -1.2006 -0.1576 9 6 1.2670 -2.4900 0.2181 10 6 0.0853 -2.4213 1.1874 11 7 0.5294 -1.8446 2.4588 12 6 -0.3288 -1.7545 3.4942 13 8 -1.4356 -2.2448 3.4094 14 6 0.0805 -1.0454 4.7443 15 8 1.2155 -0.6364 4.8654 16 8 -0.8103 -0.8610 5.7355 17 6 1.1510 -3.4460 -0.9707 18 6 2.0864 -3.7819 0.1935 19 1 -0.4850 0.8368 -0.0736 20 1 -0.3023 -3.4254 1.3596 21 1 -0.6996 -1.7973 0.7599 22 1 1.4410 -1.5276 2.5554 23 1 -0.4991 -0.3973 6.5249 24 1 0.2328 -4.0261 -1.0623 25 1 1.6085 -3.1379 -1.9109 26 1 3.1587 -3.6945 0.0187 27 1 1.7837 -4.5827 0.8682 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594605744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:09 Heat of formation + Delta-G solvation = -118.853881 kcal Electronic energy + Delta-G solvation = -14319.867269 eV Core-core repulsion = 11657.015601 eV Total energy + Delta-G solvation = -2662.851668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.80300 -40.02568 -38.49581 -37.44753 -34.94424 -34.16001 -28.81329 -27.56197 -25.77783 -22.95710 -21.67283 -21.23077 -19.60893 -19.15457 -18.01073 -17.36265 -17.04257 -16.67961 -15.97644 -15.56705 -15.08144 -14.77836 -14.34028 -13.66970 -13.45440 -12.92360 -12.85291 -12.78395 -12.67767 -12.31223 -12.04211 -11.51009 -11.12974 -10.99120 -10.67126 -10.22466 -9.89595 -8.06446 -6.21217 0.08425 1.13950 1.40458 1.46463 1.53342 2.00306 2.39795 2.90382 3.16247 3.65562 3.84369 4.21331 4.50097 4.69548 4.75595 4.98967 5.04074 5.15960 5.27100 5.43997 5.53968 5.59915 5.88689 6.30979 6.34843 6.72806 6.82212 6.98640 7.42073 8.88344 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.024099 B = 0.012905 C = 0.009763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.593184 B = 2169.153646 C = 2867.202243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.059 0.941 9 C 0.002 3.998 10 C 0.169 3.831 11 N -0.647 5.647 12 C 0.514 3.486 13 O -0.545 6.545 14 C 0.492 3.508 15 O -0.506 6.506 16 O -0.481 6.481 17 C -0.190 4.190 18 C -0.187 4.187 19 H 0.261 0.739 20 H 0.045 0.955 21 H 0.088 0.912 22 H 0.414 0.586 23 H 0.439 0.561 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.310 -1.607 6.882 7.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.001 3.999 10 C 0.047 3.953 11 N -0.298 5.298 12 C 0.294 3.706 13 O -0.424 6.424 14 C 0.330 3.670 15 O -0.394 6.394 16 O -0.294 6.294 17 C -0.229 4.229 18 C -0.224 4.224 19 H 0.071 0.929 20 H 0.063 0.937 21 H 0.105 0.895 22 H 0.251 0.749 23 H 0.303 0.697 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.102 0.898 27 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.546 -1.880 6.582 6.867 hybrid contribution 0.947 1.418 0.263 1.725 sum 1.493 -0.463 6.846 7.022 Atomic orbital electron populations 1.69943 1.06827 1.27285 1.49106 1.25519 0.95346 1.01501 0.94057 0.85795 0.79139 0.80151 0.78146 1.20344 1.21551 1.19075 1.20723 0.93838 0.89852 1.50008 0.92242 1.19238 0.95115 0.89900 0.95657 1.21020 0.98124 0.95635 0.80566 1.45649 1.14852 1.58187 1.11103 1.19032 0.85469 0.82241 0.83894 1.90727 1.21656 1.48076 1.81975 1.22885 0.82691 0.76752 0.84721 1.90859 1.21409 1.46672 1.80471 1.84582 1.43576 1.72320 1.28912 1.22940 1.00577 1.05509 0.93827 1.23000 0.97158 1.00084 1.02131 0.92914 0.93703 0.89462 0.74932 0.69690 0.90081 0.90475 0.89798 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.07 10.71 21.45 0.23 -46.84 15 2 C 0.04 1.89 5.14 84.65 0.44 2.33 15 3 Si 0.94 40.90 29.55 68.60 2.03 42.93 15 4 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 15 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 15 7 C -0.51 -25.06 8.28 25.60 0.21 -24.85 15 8 H 0.06 2.94 7.83 -2.91 -0.02 2.91 15 9 C 0.00 0.07 2.00 -52.93 -0.11 -0.04 15 10 C 0.17 7.63 4.74 86.38 0.41 8.04 15 11 N -0.65 -27.42 5.27 -464.42 -2.45 -29.87 15 12 C 0.51 20.92 7.88 87.26 0.69 21.61 15 13 O -0.54 -24.82 16.96 9.29 0.16 -24.66 15 14 C 0.49 16.55 8.40 70.84 0.59 17.14 15 15 O -0.51 -18.04 17.28 20.64 0.36 -17.69 15 16 O -0.48 -12.34 13.30 -49.68 -0.66 -13.00 15 17 C -0.19 -7.75 9.96 30.62 0.30 -7.45 15 18 C -0.19 -7.12 9.92 30.62 0.30 -6.82 15 19 H 0.26 13.44 8.32 -92.71 -0.77 12.67 15 20 H 0.04 1.92 8.06 -2.39 -0.02 1.90 15 21 H 0.09 4.52 6.02 -2.39 -0.01 4.51 15 22 H 0.41 17.42 7.41 -92.71 -0.69 16.73 15 23 H 0.44 5.55 9.11 -74.06 -0.67 4.88 15 24 H 0.08 3.07 8.14 -2.39 -0.02 3.05 15 25 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 26 H 0.08 3.10 8.14 -2.39 -0.02 3.08 15 27 H 0.09 3.06 8.14 -2.39 -0.02 3.04 15 Total: -1.00 -59.41 250.01 2.36 -57.06 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -0.15 Total: 22.11 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 2.84 Total: 9.96 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.22 Total: -76.71 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.15 Total: -55.35 kcal Atomic # 14 Polarization: 40.90 SS G_CDS: 2.03 Total: 42.93 kcal Total: -59.41 2.36 -57.06 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594605744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.799 kcal (2) G-P(sol) polarization free energy of solvation -59.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds