Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47094 * 239.99869 * 3 2 1 5 5 H 1.48501 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46814 * 120.00074 * 3 2 1 7 7 C 1.37880 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00089 * 180.02562 * 11 10 9 13 13 C 1.53780 * 113.61674 * 155.00059 * 12 11 10 14 14 C 1.53776 * 87.08391 * 89.19905 * 13 12 11 15 15 C 1.50700 * 113.61608 * 139.98003 * 14 13 12 16 16 O 1.20822 * 119.99958 * 1.52893 * 15 14 13 17 17 O 1.34234 * 120.00068 * 181.53085 * 15 14 13 18 18 C 1.53786 * 87.17529 * 25.38941 * 14 13 12 19 19 H 0.96993 * 120.00121 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47511 * 59.99430 * 9 7 2 21 21 H 1.09000 * 109.47151 * 299.99929 * 9 7 2 22 22 H 1.08995 * 109.47015 * 59.99829 * 10 9 7 23 23 H 1.09005 * 109.46959 * 299.99637 * 10 9 7 24 24 H 1.00902 * 111.00034 * 303.95285 * 11 10 9 25 25 H 1.08999 * 112.85309 * 23.79804 * 12 11 10 26 26 H 1.08995 * 113.61228 * 334.64866 * 13 12 11 27 27 H 1.09003 * 113.61203 * 203.74982 * 13 12 11 28 28 H 1.09000 * 113.61979 * 270.80261 * 14 13 12 29 29 H 0.96698 * 117.00153 * 179.97438 * 17 15 14 30 30 H 1.08999 * 113.61104 * 89.15358 * 18 14 13 31 31 H 1.08994 * 113.61609 * 220.06183 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4353 -6.0759 0.0018 13 6 1.8306 -7.3580 0.5979 14 6 1.3386 -7.6915 -0.8204 15 6 1.4702 -9.1496 -1.1778 16 8 1.9025 -9.9337 -0.3666 17 8 1.1072 -9.5771 -2.3973 18 6 2.4944 -6.8223 -1.3435 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8720 -3.6044 -0.8895 24 1 0.8747 -4.9841 0.7828 25 1 3.4159 -5.8263 0.4070 26 1 1.0242 -7.1715 1.3071 27 1 2.5761 -8.0570 0.9771 28 1 0.3517 -7.2877 -1.0465 29 1 1.2103 -10.5210 -2.5803 30 1 3.4216 -7.3746 -1.4960 31 1 2.2231 -6.2040 -2.1992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -84.220114 kcal Electronic energy + Delta-G solvation = -13717.887125 eV Core-core repulsion = 11192.370385 eV Total energy + Delta-G solvation = -2525.516740 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.69703 -38.51926 -36.16875 -34.53466 -32.47848 -29.04633 -26.33350 -25.75563 -23.90257 -21.59738 -20.58867 -18.94890 -18.24016 -17.05174 -16.28517 -15.86845 -15.16292 -14.65069 -14.49304 -14.20696 -13.21336 -12.89980 -12.49814 -12.25680 -12.08941 -11.62929 -11.55577 -11.14346 -10.96460 -10.76459 -10.61379 -10.48429 -10.29333 -9.97068 -9.37214 -9.17452 -8.36262 -7.90793 -6.00682 -4.03469 2.10491 2.99883 3.33170 3.37657 3.39900 4.32862 4.42096 4.49366 4.63753 4.82974 5.19071 5.31870 5.35366 5.61527 5.69355 5.81413 6.05500 6.07376 6.15487 6.32943 6.38199 6.42352 6.95224 7.43737 7.69616 7.78975 7.80610 7.91245 8.05869 8.41827 9.03559 9.60458 11.10717 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.082030 B = 0.004678 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.255438 B = 5983.852395 C = 6037.981397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.674 5.674 12 C 0.063 3.937 13 C -0.125 4.125 14 C -0.101 4.101 15 C 0.488 3.512 16 O -0.523 6.523 17 O -0.515 6.515 18 C -0.113 4.113 19 H 0.261 0.739 20 H 0.025 0.975 21 H 0.014 0.986 22 H 0.018 0.982 23 H 0.059 0.941 24 H 0.341 0.659 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.096 0.904 28 H 0.131 0.869 29 H 0.404 0.596 30 H 0.080 0.920 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.892 -15.625 -2.049 16.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.306 5.306 12 C -0.048 4.048 13 C -0.163 4.163 14 C -0.120 4.120 15 C 0.331 3.669 16 O -0.412 6.412 17 O -0.326 6.326 18 C -0.152 4.152 19 H 0.071 0.929 20 H 0.044 0.956 21 H 0.032 0.968 22 H 0.036 0.964 23 H 0.078 0.922 24 H 0.160 0.840 25 H 0.081 0.919 26 H 0.098 0.902 27 H 0.114 0.886 28 H 0.149 0.851 29 H 0.263 0.737 30 H 0.099 0.901 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.722 -15.289 -2.422 15.717 hybrid contribution 0.776 0.266 0.741 1.105 sum 3.498 -15.023 -1.681 15.516 Atomic orbital electron populations 1.69958 1.06040 1.26742 1.50521 1.24997 0.94835 0.99209 0.95246 0.86645 0.79566 0.83099 0.78601 1.20210 1.21263 1.20294 1.21132 0.92958 0.91014 1.51089 0.92797 1.19071 0.94024 0.90418 0.97754 1.22230 0.97000 0.88134 0.98810 1.60472 1.19015 1.01566 1.49550 1.22555 0.96146 0.90471 0.95612 1.23263 1.01309 0.97481 0.94262 1.22510 1.03511 0.86591 0.99393 1.23738 0.72450 0.92147 0.78577 1.90684 1.42910 1.57170 1.50393 1.84610 1.79314 1.33243 1.35429 1.23004 0.95757 0.96756 0.99638 0.92913 0.95613 0.96777 0.96408 0.92198 0.84022 0.91875 0.90248 0.88599 0.85121 0.73746 0.90108 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.63 5.23 -27.88 -0.15 0.49 16 10 C 0.07 1.35 5.47 -3.82 -0.02 1.33 16 11 N -0.67 -11.24 6.46 -105.77 -0.68 -11.92 16 12 C 0.06 0.86 4.23 -66.81 -0.28 0.58 16 13 C -0.13 -1.49 7.07 -25.92 -0.18 -1.67 16 14 C -0.10 -1.19 4.17 -90.96 -0.38 -1.57 16 15 C 0.49 5.81 7.85 36.01 0.28 6.09 16 16 O -0.52 -7.53 16.67 -18.75 -0.31 -7.85 16 17 O -0.51 -4.95 13.42 -39.27 -0.53 -5.47 16 18 C -0.11 -1.39 7.44 -25.82 -0.19 -1.58 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.02 0.36 8.13 -51.93 -0.42 -0.07 16 23 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 24 H 0.34 5.44 8.38 -39.29 -0.33 5.12 16 25 H 0.06 0.87 7.87 -51.93 -0.41 0.46 16 26 H 0.08 0.89 7.91 -51.93 -0.41 0.48 16 27 H 0.10 1.14 7.45 -51.93 -0.39 0.76 16 28 H 0.13 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.40 2.06 9.10 45.56 0.41 2.48 16 30 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 31 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 270.42 15.07 4.08 4.08 Total: -1.00 -31.78 270.42 -6.68 -38.46 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -3.62 Total: 1.99 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.33 Total: -9.78 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.05 Total: -37.93 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.84 Total: -13.32 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.78 -6.68 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.756 kcal (2) G-P(sol) polarization free energy of solvation -31.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds