Wall clock time and date at job start Sun Mar 29 2020 21:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99921 * 2 1 4 4 H 1.48496 * 109.47094 * 239.99869 * 3 2 1 5 5 H 1.48501 * 109.46997 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46814 * 120.00074 * 3 2 1 7 7 C 1.37880 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00004 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00076 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47316 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47206 * 179.97438 * 10 9 7 12 12 C 1.46898 * 111.00089 * 180.02562 * 11 10 9 13 13 C 1.53780 * 113.61674 * 155.00059 * 12 11 10 14 14 C 1.53776 * 87.08391 * 89.19905 * 13 12 11 15 15 C 1.50700 * 113.61608 * 139.98003 * 14 13 12 16 16 O 1.20822 * 119.99958 * 1.52893 * 15 14 13 17 17 O 1.34234 * 120.00068 * 181.53085 * 15 14 13 18 18 C 1.53786 * 87.17529 * 25.38941 * 14 13 12 19 19 H 0.96993 * 120.00121 * 359.97438 * 1 2 3 20 20 H 1.08998 * 109.47511 * 59.99430 * 9 7 2 21 21 H 1.09000 * 109.47151 * 299.99929 * 9 7 2 22 22 H 1.08995 * 109.47015 * 59.99829 * 10 9 7 23 23 H 1.09005 * 109.46959 * 299.99637 * 10 9 7 24 24 H 1.00902 * 111.00034 * 303.95285 * 11 10 9 25 25 H 1.08999 * 112.85309 * 23.79804 * 12 11 10 26 26 H 1.08995 * 113.61228 * 334.64866 * 13 12 11 27 27 H 1.09003 * 113.61203 * 203.74982 * 13 12 11 28 28 H 1.09000 * 113.61979 * 270.80261 * 14 13 12 29 29 H 0.96698 * 117.00153 * 179.97438 * 17 15 14 30 30 H 1.08999 * 113.61104 * 89.15358 * 18 14 13 31 31 H 1.08994 * 113.61609 * 220.06183 * 18 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 7 1.5109 -4.9342 0.0012 12 6 2.4353 -6.0759 0.0018 13 6 1.8306 -7.3580 0.5979 14 6 1.3386 -7.6915 -0.8204 15 6 1.4702 -9.1496 -1.1778 16 8 1.9025 -9.9337 -0.3666 17 8 1.1072 -9.5771 -2.3973 18 6 2.4944 -6.8223 -1.3435 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8896 21 1 0.6241 -2.5567 0.8903 22 1 2.8720 -3.6043 0.8905 23 1 2.8720 -3.6044 -0.8895 24 1 0.8747 -4.9841 0.7828 25 1 3.4159 -5.8263 0.4070 26 1 1.0242 -7.1715 1.3071 27 1 2.5761 -8.0570 0.9771 28 1 0.3517 -7.2877 -1.0465 29 1 1.2103 -10.5210 -2.5803 30 1 3.4216 -7.3746 -1.4960 31 1 2.2231 -6.2040 -2.1992 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609108.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:35 Heat of formation + Delta-G solvation = -107.072469 kcal Electronic energy + Delta-G solvation = -13718.878078 eV Core-core repulsion = 11192.370385 eV Total energy + Delta-G solvation = -2526.507693 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.65034 -39.56117 -37.07843 -36.21858 -34.39558 -30.83389 -27.58444 -26.73631 -25.73324 -22.58571 -22.42140 -20.01991 -19.14644 -18.43827 -17.97624 -16.87363 -16.57821 -16.29294 -15.86269 -15.41311 -14.58240 -14.48799 -13.98040 -13.49721 -13.34828 -12.96295 -12.85044 -12.69464 -12.52746 -12.37313 -12.14163 -11.66048 -11.51554 -11.41615 -11.31598 -11.07702 -10.53515 -9.27943 -8.18237 -6.29402 1.17883 1.42475 1.45277 1.53206 2.19172 2.42436 3.15526 3.20380 3.46308 3.56240 3.79193 4.17019 4.44879 4.55960 4.59642 4.66991 4.74732 4.85808 5.07449 5.07837 5.12091 5.19656 5.48826 5.61530 5.71064 5.81929 6.16620 6.30837 6.55955 6.88140 7.02449 7.39910 8.93631 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.082030 B = 0.004678 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 341.255438 B = 5983.852395 C = 6037.981397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.085 3.915 11 N -0.677 5.677 12 C 0.056 3.944 13 C -0.115 4.115 14 C -0.100 4.100 15 C 0.496 3.504 16 O -0.550 6.550 17 O -0.512 6.512 18 C -0.107 4.107 19 H 0.264 0.736 20 H -0.004 1.004 21 H -0.007 1.007 22 H 0.021 0.979 23 H 0.059 0.941 24 H 0.344 0.656 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.100 0.900 28 H 0.132 0.868 29 H 0.425 0.575 30 H 0.096 0.904 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.940 -16.033 -2.233 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.043 4.043 11 N -0.309 5.309 12 C -0.054 4.054 13 C -0.153 4.153 14 C -0.119 4.119 15 C 0.341 3.659 16 O -0.441 6.441 17 O -0.325 6.325 18 C -0.146 4.146 19 H 0.072 0.928 20 H 0.014 0.986 21 H 0.011 0.989 22 H 0.039 0.961 23 H 0.077 0.923 24 H 0.163 0.837 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.118 0.882 28 H 0.149 0.851 29 H 0.287 0.713 30 H 0.114 0.886 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.775 -15.732 -2.625 16.390 hybrid contribution 0.410 0.321 0.755 0.918 sum 4.185 -15.411 -1.870 16.079 Atomic orbital electron populations 1.70094 1.07797 1.27834 1.51442 1.25947 0.95726 1.03280 0.94652 0.85504 0.78260 0.78123 0.79166 1.19186 1.20896 1.19193 1.21600 0.93560 0.92325 1.50919 0.92150 1.18930 0.94357 0.92224 0.95196 1.21822 0.95549 0.88093 0.98874 1.60358 1.19438 1.01096 1.49971 1.22606 0.95690 0.89954 0.97172 1.23179 1.01429 0.96160 0.94513 1.22468 1.03369 0.86832 0.99218 1.23584 0.71766 0.91815 0.78770 1.90682 1.44289 1.57803 1.51300 1.84558 1.78606 1.35237 1.34084 1.22978 0.96709 0.96515 0.98375 0.92771 0.98578 0.98905 0.96081 0.92275 0.83655 0.91609 0.89604 0.88183 0.85057 0.71326 0.88563 0.90166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.53 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.11 5.46 84.65 0.46 0.58 16 3 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.03 1.59 5.23 29.85 0.16 1.74 16 10 C 0.09 3.45 5.47 86.31 0.47 3.93 16 11 N -0.68 -22.17 6.46 -488.54 -3.15 -25.32 16 12 C 0.06 1.45 4.23 45.50 0.19 1.64 16 13 C -0.11 -2.53 7.07 31.12 0.22 -2.31 16 14 C -0.10 -2.19 4.17 -11.01 -0.05 -2.23 16 15 C 0.50 10.86 7.85 71.24 0.56 11.42 16 16 O -0.55 -14.88 16.67 21.98 0.37 -14.51 16 17 O -0.51 -8.66 13.42 -51.46 -0.69 -9.35 16 18 C -0.11 -2.46 7.44 31.18 0.23 -2.23 16 19 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 20 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 21 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 22 H 0.02 0.83 8.13 -2.39 -0.02 0.81 16 23 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 24 H 0.34 10.86 8.38 -89.69 -0.75 10.11 16 25 H 0.07 1.70 7.87 -2.39 -0.02 1.68 16 26 H 0.09 1.79 7.91 -2.39 -0.02 1.77 16 27 H 0.10 2.19 7.45 -2.39 -0.02 2.17 16 28 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 29 H 0.43 3.29 9.10 -74.06 -0.67 2.61 16 30 H 0.10 1.92 8.09 -2.39 -0.02 1.90 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.30 270.42 1.02 -66.27 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -0.29 Total: 11.30 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 2.48 Total: -18.05 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -2.87 Total: -81.57 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.32 Total: -23.86 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -67.30 1.02 -66.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609108.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.799 kcal (2) G-P(sol) polarization free energy of solvation -67.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds