Wall clock time and date at job start Sun Mar 29 2020 21:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86797 * 120.00398 * 2 1 4 4 H 1.48506 * 109.47026 * 274.98661 * 3 2 1 5 5 H 1.48496 * 109.47003 * 34.97904 * 3 2 1 6 6 H 1.48499 * 109.47397 * 154.98390 * 3 2 1 7 7 C 1.40047 * 119.99741 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00316 * 186.14930 * 7 2 1 9 9 C 1.46379 * 120.00324 * 6.14983 * 7 2 1 10 10 O 1.21690 * 119.99322 * 353.93788 * 9 7 2 11 11 N 1.34772 * 120.00042 * 173.93721 * 9 7 2 12 12 C 1.46509 * 119.99842 * 180.02562 * 11 9 7 13 13 H 1.09001 * 109.46778 * 34.99996 * 12 11 9 14 14 C 1.50703 * 109.47102 * 275.00483 * 12 11 9 15 15 O 1.20826 * 120.00179 * 359.97438 * 14 12 11 16 16 O 1.34224 * 119.99744 * 179.97438 * 14 12 11 17 17 C 1.52994 * 109.47248 * 155.00113 * 12 11 9 18 18 C 1.52996 * 117.49923 * 248.74921 * 17 12 11 19 19 C 1.52994 * 117.49952 * 180.08786 * 17 12 11 20 20 H 0.97006 * 119.99616 * 0.02562 * 1 2 3 21 21 H 0.96995 * 120.00504 * 0.02562 * 11 9 7 22 22 H 0.96702 * 117.00109 * 179.97438 * 16 14 12 23 23 H 1.08998 * 115.55024 * 34.41634 * 17 12 11 24 24 H 1.09005 * 117.49889 * 359.97438 * 18 17 12 25 25 H 1.08999 * 117.49969 * 145.02167 * 18 17 12 26 26 H 1.08999 * 117.49925 * 214.98105 * 19 17 12 27 27 H 1.09000 * 117.49869 * 359.97438 * 19 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6176 0.0000 4 1 2.3829 2.1072 -1.3948 5 1 1.4949 2.6199 0.8026 6 1 3.5870 1.4119 0.5920 7 6 2.0069 -1.2129 0.0005 8 1 3.0823 -1.2156 0.1007 9 6 1.2813 -2.4770 -0.1347 10 8 0.0644 -2.4827 -0.1366 11 7 1.9610 -3.6343 -0.2571 12 6 1.2347 -4.8994 -0.3930 13 1 0.3244 -4.7356 -0.9697 14 6 0.8760 -5.4222 0.9742 15 8 1.1947 -4.8019 1.9609 16 8 0.2025 -6.5768 1.0958 17 6 2.1182 -5.9198 -1.1135 18 6 1.7045 -6.3404 -2.5252 19 6 1.5347 -7.3133 -1.3556 20 1 -0.4850 0.8401 -0.0004 21 1 2.9309 -3.6297 -0.2552 22 1 -0.0047 -6.8718 1.9931 23 1 3.1851 -5.8508 -0.9013 24 1 0.8026 -5.8905 -2.9404 25 1 2.4992 -6.5486 -3.2415 26 1 2.2178 -8.1610 -1.3030 27 1 0.5216 -7.5032 -1.0012 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060323.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:03 Heat of formation + Delta-G solvation = -135.953081 kcal Electronic energy + Delta-G solvation = -14215.762359 eV Core-core repulsion = 11552.169214 eV Total energy + Delta-G solvation = -2663.593145 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.49567 -39.37178 -38.10634 -37.03273 -34.91000 -34.24365 -29.87563 -27.67281 -23.91849 -23.07374 -22.01350 -21.38956 -19.28674 -19.10486 -17.67638 -17.48261 -16.94276 -16.62387 -15.89183 -15.31852 -14.78163 -14.65836 -14.37546 -13.69992 -13.16571 -12.80873 -12.67532 -12.62154 -12.45611 -12.20364 -12.01650 -11.92688 -11.32447 -11.01987 -10.92104 -9.97325 -9.72553 -8.33726 -6.89272 1.23992 1.39638 1.40739 1.57425 1.96475 2.23474 2.51319 2.71494 3.23671 3.58054 3.65216 3.98552 4.08903 4.18957 4.53650 4.59013 4.88559 5.05180 5.22013 5.29909 5.36942 5.60491 5.82076 6.01673 6.19244 6.83282 7.04842 7.41343 8.40890 8.62484 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.045659 B = 0.008381 C = 0.007756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.099223 B = 3340.258820 C = 3609.041539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.572 4.572 8 H 0.089 0.911 9 C 0.543 3.457 10 O -0.629 6.629 11 N -0.730 5.730 12 C 0.195 3.805 13 H 0.091 0.909 14 C 0.468 3.532 15 O -0.550 6.550 16 O -0.501 6.501 17 C -0.177 4.177 18 C -0.162 4.162 19 C -0.146 4.146 20 H 0.276 0.724 21 H 0.401 0.599 22 H 0.419 0.581 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.834 -11.765 -3.423 13.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.187 4.187 3 Si 0.821 3.179 4 H -0.183 1.183 5 H -0.198 1.198 6 H -0.173 1.173 7 C -0.608 4.608 8 H 0.107 0.893 9 C 0.349 3.651 10 O -0.517 6.517 11 N -0.384 5.384 12 C 0.086 3.914 13 H 0.108 0.892 14 C 0.310 3.690 15 O -0.440 6.440 16 O -0.313 6.313 17 C -0.196 4.196 18 C -0.199 4.199 19 C -0.184 4.184 20 H 0.086 0.914 21 H 0.235 0.765 22 H 0.280 0.720 23 H 0.144 0.856 24 H 0.105 0.895 25 H 0.139 0.861 26 H 0.141 0.859 27 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.961 -11.400 -3.546 12.928 hybrid contribution 0.190 0.671 0.949 1.177 sum 5.152 -10.729 -2.597 12.182 Atomic orbital electron populations 1.70191 1.09631 1.29096 1.36088 1.27020 0.95552 1.05074 0.91063 0.84949 0.78786 0.74798 0.79382 1.18253 1.19829 1.17260 1.21413 0.95357 0.90131 1.53906 0.89332 1.18623 0.86803 0.84103 0.75599 1.90545 1.16119 1.87424 1.57576 1.45658 1.09396 1.03882 1.79496 1.19749 0.97673 0.85499 0.88441 0.89175 1.24765 0.73134 0.77718 0.93407 1.90679 1.53035 1.58600 1.41705 1.84515 1.69024 1.38126 1.39652 1.22233 0.99387 0.96636 1.01306 1.23169 1.03689 1.02591 0.90418 1.23159 1.03307 0.91364 1.00523 0.91447 0.76467 0.72002 0.85600 0.89515 0.86090 0.85934 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.30 11.85 21.83 0.26 -51.04 15 2 C 0.03 1.60 5.49 85.30 0.47 2.07 15 3 Si 1.00 41.72 29.56 68.60 2.03 43.75 15 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 15 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 6 H -0.25 -9.68 7.11 99.48 0.71 -8.98 15 7 C -0.57 -33.43 9.53 24.83 0.24 -33.20 15 8 H 0.09 4.65 7.85 -2.91 -0.02 4.63 15 9 C 0.54 32.54 7.57 86.36 0.65 33.19 15 10 O -0.63 -43.13 14.71 -4.32 -0.06 -43.19 15 11 N -0.73 -34.05 4.60 -450.38 -2.07 -36.13 15 12 C 0.20 7.67 2.72 44.24 0.12 7.79 15 13 H 0.09 3.97 7.33 -2.39 -0.02 3.95 15 14 C 0.47 18.65 7.64 71.24 0.54 19.19 15 15 O -0.55 -26.99 17.08 21.97 0.38 -26.61 15 16 O -0.50 -14.23 11.36 -51.36 -0.58 -14.81 15 17 C -0.18 -4.77 5.33 -10.80 -0.06 -4.83 15 18 C -0.16 -3.59 10.18 30.62 0.31 -3.28 15 19 C -0.15 -3.01 9.45 30.62 0.29 -2.72 15 20 H 0.28 15.52 8.29 -92.70 -0.77 14.75 15 21 H 0.40 16.21 8.53 -92.71 -0.79 15.42 15 22 H 0.42 8.17 9.10 -74.06 -0.67 7.50 15 23 H 0.13 3.02 8.07 -2.39 -0.02 3.00 15 24 H 0.09 2.15 8.05 -2.38 -0.02 2.13 15 25 H 0.12 2.09 8.14 -2.39 -0.02 2.07 15 26 H 0.12 1.86 8.14 -2.39 -0.02 1.84 15 27 H 0.10 2.25 6.85 -2.39 -0.02 2.24 15 Total: -1.00 -83.24 248.78 2.26 -80.98 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: -0.25 Total: 28.84 kcal Atomic # 6 Polarization: 15.65 SS G_CDS: 2.57 Total: 18.22 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.81 Total: -87.17 kcal Atomic # 8 Polarization: -84.34 SS G_CDS: -0.27 Total: -84.62 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -83.24 2.26 -80.98 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060323.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.977 kcal (2) G-P(sol) polarization free energy of solvation -83.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds