Wall clock time and date at job start Sun Mar 29 2020 21:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48496 * 109.47340 * 270.00622 * 3 2 1 5 5 H 1.48507 * 109.46756 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00367 * 3 2 1 7 7 C 1.40053 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00286 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00196 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00188 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00265 * 179.97438 * 11 9 7 13 13 C 1.50696 * 112.84627 * 309.66848 * 12 11 9 14 14 O 1.20833 * 119.99655 * 205.32759 * 13 12 11 15 15 O 1.34222 * 120.00432 * 25.61026 * 13 12 11 16 16 C 1.53781 * 113.61018 * 80.86682 * 12 11 9 17 17 C 1.53956 * 87.01992 * 89.23240 * 16 12 11 18 18 C 1.53780 * 113.61161 * 178.47454 * 12 11 9 19 19 H 0.96995 * 120.00249 * 359.97438 * 1 2 3 20 20 H 0.97005 * 120.00012 * 0.02562 * 11 9 7 21 21 H 0.96701 * 117.00458 * 179.72178 * 15 13 12 22 22 H 1.09004 * 113.60585 * 203.74980 * 16 12 11 23 23 H 1.09000 * 113.61537 * 334.64870 * 16 12 11 24 24 H 1.09008 * 113.53197 * 270.80714 * 17 16 12 25 25 H 1.08992 * 113.74318 * 139.94280 * 17 16 12 26 26 H 1.08991 * 113.61749 * 25.34967 * 18 12 11 27 27 H 1.08999 * 113.60961 * 156.17073 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.4881 2.0464 -1.4000 5 1 1.4382 2.6526 0.7002 6 1 3.5383 1.4400 0.7000 7 6 2.0068 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 0.0004 11 7 1.9488 -3.6477 -0.0016 12 6 1.2162 -4.9165 -0.0010 13 6 0.1572 -4.9802 1.0692 14 8 -0.2017 -6.0501 1.5010 15 8 -0.3914 -3.8488 1.5387 16 6 0.7129 -5.3378 -1.3918 17 6 2.0616 -6.0577 -1.5732 18 6 2.1280 -6.1542 -0.0399 19 1 -0.4850 0.8400 0.0004 20 1 2.9188 -3.6478 -0.0020 21 1 -1.0697 -3.9403 2.2219 22 1 -0.1419 -6.0134 -1.3604 23 1 0.5679 -4.5013 -2.0754 24 1 2.8378 -5.4257 -2.0050 25 1 1.9795 -7.0251 -2.0685 26 1 3.1237 -5.9760 0.3661 27 1 1.6613 -7.0531 0.3629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060375.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:23 Heat of formation + Delta-G solvation = -102.886112 kcal Electronic energy + Delta-G solvation = -14708.762479 eV Core-core repulsion = 12046.603226 eV Total energy + Delta-G solvation = -2662.159253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.25089 -37.89937 -36.40286 -34.97192 -32.54378 -31.42701 -26.91743 -25.48435 -25.32649 -21.59489 -20.43581 -18.24220 -17.47449 -17.11826 -16.24257 -15.25910 -15.13087 -14.61597 -14.17856 -13.72643 -12.75763 -12.46437 -12.25944 -12.01717 -11.51198 -11.23604 -11.01172 -10.97908 -10.63738 -10.56235 -10.44662 -10.19667 -10.14739 -9.66527 -8.83496 -7.63340 -7.51561 -6.17787 -4.63090 2.87561 3.13777 3.20998 3.23891 3.92712 4.07970 4.55259 4.59900 4.77843 4.90950 5.17240 5.41575 5.82530 5.87424 5.98713 6.04358 6.20013 6.35708 6.42381 6.58293 7.28957 7.43119 7.79075 7.98500 8.29317 8.79994 9.02856 9.47343 10.60779 10.80092 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.046054 B = 0.009994 C = 0.008939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.839387 B = 2801.042428 C = 3131.763698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.066 0.934 9 C 0.551 3.449 10 O -0.534 6.534 11 N -0.742 5.742 12 C 0.167 3.833 13 C 0.488 3.512 14 O -0.554 6.554 15 O -0.441 6.441 16 C -0.131 4.131 17 C -0.133 4.133 18 C -0.127 4.127 19 H 0.267 0.733 20 H 0.386 0.614 21 H 0.374 0.626 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -6.814 -0.955 8.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C 0.354 3.646 10 O -0.414 6.414 11 N -0.399 5.399 12 C 0.076 3.924 13 C 0.331 3.669 14 O -0.446 6.446 15 O -0.246 6.246 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.165 4.165 19 H 0.078 0.922 20 H 0.219 0.781 21 H 0.230 0.770 22 H 0.101 0.899 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 3.432 -6.880 -1.139 7.773 hybrid contribution 0.447 0.774 0.510 1.029 sum 3.879 -6.106 -0.630 7.261 Atomic orbital electron populations 1.70007 1.06915 1.27146 1.35439 1.25650 0.94610 1.00095 0.92717 0.86400 0.80157 0.81579 0.78755 1.19828 1.20537 1.19007 1.20802 0.93466 0.89174 1.54648 0.91602 1.18266 0.87600 0.81889 0.76819 1.90630 1.13386 1.85446 1.51891 1.46175 1.08374 1.02887 1.82457 1.20701 0.91283 0.88305 0.92119 1.23878 0.80995 0.81479 0.80572 1.90594 1.63012 1.31681 1.59351 1.85536 1.51999 1.33988 1.53032 1.23281 0.97295 1.00524 0.95931 1.22791 0.98068 1.00588 0.95580 1.23222 0.99278 0.96821 0.97156 0.92200 0.78118 0.77039 0.89935 0.89795 0.89642 0.91109 0.90585 0.88162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.30 11.83 55.55 0.66 -21.64 15 2 C 0.09 2.41 5.50 -17.37 -0.10 2.32 15 3 Si 0.91 19.77 29.56 -169.99 -5.02 14.75 15 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.27 -5.63 7.11 56.52 0.40 -5.23 15 7 C -0.54 -14.86 9.54 -35.63 -0.34 -15.20 15 8 H 0.07 1.65 7.85 -52.48 -0.41 1.24 15 9 C 0.55 14.89 7.10 -12.99 -0.09 14.80 15 10 O -0.53 -16.03 11.54 -20.04 -0.23 -16.26 15 11 N -0.74 -15.98 5.21 -49.32 -0.26 -16.24 15 12 C 0.17 3.25 1.11 -132.16 -0.15 3.11 15 13 C 0.49 10.56 7.44 36.00 0.27 10.83 15 14 O -0.55 -12.04 16.80 -18.76 -0.32 -12.36 15 15 O -0.44 -10.18 9.16 -47.59 -0.44 -10.62 15 16 C -0.13 -2.31 7.43 -25.83 -0.19 -2.51 15 17 C -0.13 -1.83 8.00 -25.83 -0.21 -2.04 15 18 C -0.13 -1.90 7.23 -25.92 -0.19 -2.09 15 19 H 0.27 7.11 8.29 -40.82 -0.34 6.77 15 20 H 0.39 7.25 8.61 -40.82 -0.35 6.89 15 21 H 0.37 6.84 9.10 45.56 0.41 7.25 15 22 H 0.08 1.40 8.09 -51.93 -0.42 0.97 15 23 H 0.08 1.65 8.14 -51.93 -0.42 1.22 15 24 H 0.08 1.13 8.14 -51.92 -0.42 0.71 15 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.08 1.01 8.11 -51.93 -0.42 0.58 15 27 H 0.10 1.49 7.38 -51.93 -0.38 1.11 15 LS Contribution 240.61 15.07 3.63 3.63 Total: -1.00 -33.70 240.61 -4.95 -38.65 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -1.98 Total: 10.88 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.99 Total: 9.22 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.40 Total: -37.88 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.98 Total: -39.24 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -33.70 -4.95 -38.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060375.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.239 kcal (2) G-P(sol) polarization free energy of solvation -33.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds