Wall clock time and date at job start Sun Mar 29 2020 21:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86795 * 120.00328 * 2 1 4 4 H 1.48496 * 109.47340 * 270.00622 * 3 2 1 5 5 H 1.48507 * 109.46756 * 30.00428 * 3 2 1 6 6 H 1.48501 * 109.47351 * 150.00367 * 3 2 1 7 7 C 1.40053 * 119.99543 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99765 * 179.97438 * 7 2 1 9 9 C 1.46367 * 120.00286 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00196 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00188 * 179.97438 * 9 7 2 12 12 C 1.46506 * 120.00265 * 179.97438 * 11 9 7 13 13 C 1.50696 * 112.84627 * 309.66848 * 12 11 9 14 14 O 1.20833 * 119.99655 * 205.32759 * 13 12 11 15 15 O 1.34222 * 120.00432 * 25.61026 * 13 12 11 16 16 C 1.53781 * 113.61018 * 80.86682 * 12 11 9 17 17 C 1.53956 * 87.01992 * 89.23240 * 16 12 11 18 18 C 1.53780 * 113.61161 * 178.47454 * 12 11 9 19 19 H 0.96995 * 120.00249 * 359.97438 * 1 2 3 20 20 H 0.97005 * 120.00012 * 0.02562 * 11 9 7 21 21 H 0.96701 * 117.00458 * 179.72178 * 15 13 12 22 22 H 1.09004 * 113.60585 * 203.74980 * 16 12 11 23 23 H 1.09000 * 113.61537 * 334.64870 * 16 12 11 24 24 H 1.09008 * 113.53197 * 270.80714 * 17 16 12 25 25 H 1.08992 * 113.74318 * 139.94280 * 17 16 12 26 26 H 1.08991 * 113.61749 * 25.34967 * 18 12 11 27 27 H 1.08999 * 113.60961 * 156.17073 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6176 0.0000 4 1 2.4881 2.0464 -1.4000 5 1 1.4382 2.6526 0.7002 6 1 3.5383 1.4400 0.7000 7 6 2.0068 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 0.0004 11 7 1.9488 -3.6477 -0.0016 12 6 1.2162 -4.9165 -0.0010 13 6 0.1572 -4.9802 1.0692 14 8 -0.2017 -6.0501 1.5010 15 8 -0.3914 -3.8488 1.5387 16 6 0.7129 -5.3378 -1.3918 17 6 2.0616 -6.0577 -1.5732 18 6 2.1280 -6.1542 -0.0399 19 1 -0.4850 0.8400 0.0004 20 1 2.9188 -3.6478 -0.0020 21 1 -1.0697 -3.9403 2.2219 22 1 -0.1419 -6.0134 -1.3604 23 1 0.5679 -4.5013 -2.0754 24 1 2.8378 -5.4257 -2.0050 25 1 1.9795 -7.0251 -2.0685 26 1 3.1237 -5.9760 0.3661 27 1 1.6613 -7.0531 0.3629 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060375.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:23 Heat of formation + Delta-G solvation = -128.278796 kcal Electronic energy + Delta-G solvation = -14709.863589 eV Core-core repulsion = 12046.603226 eV Total energy + Delta-G solvation = -2663.260363 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.84477 -39.56580 -38.24808 -36.73827 -34.56778 -33.27253 -28.75703 -27.07607 -26.78340 -23.17742 -22.21055 -19.81597 -19.29722 -18.91396 -17.95984 -17.20344 -16.71675 -16.21948 -15.70926 -15.35718 -14.60287 -14.31743 -13.98982 -13.38906 -13.08835 -13.00464 -12.70765 -12.51059 -12.39777 -12.30612 -12.00574 -11.81706 -11.51880 -11.26556 -10.82949 -9.61065 -9.46527 -8.19989 -6.75096 1.19865 1.43764 1.44681 1.58717 2.27528 2.38508 2.59279 2.92307 3.41779 3.55339 3.77670 3.91662 4.17042 4.58952 4.66224 4.76898 4.98246 5.02821 5.07917 5.35674 5.39701 5.63916 5.94226 6.17570 6.31036 6.96147 7.16193 7.59664 8.60911 8.79342 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.046054 B = 0.009994 C = 0.008939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.839387 B = 2801.042428 C = 3131.763698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 0.991 3.009 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.540 3.460 10 O -0.573 6.573 11 N -0.730 5.730 12 C 0.143 3.857 13 C 0.480 3.520 14 O -0.560 6.560 15 O -0.468 6.468 16 C -0.137 4.137 17 C -0.110 4.110 18 C -0.110 4.110 19 H 0.271 0.729 20 H 0.401 0.599 21 H 0.388 0.612 22 H 0.086 0.914 23 H 0.055 0.945 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.419 -7.259 -1.332 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.182 4.182 3 Si 0.811 3.189 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.175 1.175 7 C -0.610 4.610 8 H 0.101 0.899 9 C 0.342 3.658 10 O -0.456 6.456 11 N -0.387 5.387 12 C 0.052 3.948 13 C 0.324 3.676 14 O -0.453 6.453 15 O -0.275 6.275 16 C -0.176 4.176 17 C -0.147 4.147 18 C -0.148 4.148 19 H 0.081 0.919 20 H 0.236 0.764 21 H 0.245 0.755 22 H 0.104 0.896 23 H 0.074 0.926 24 H 0.113 0.887 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.564 -7.372 -1.514 9.359 hybrid contribution -0.263 0.829 0.652 1.087 sum 5.302 -6.543 -0.862 8.465 Atomic orbital electron populations 1.70171 1.09161 1.28509 1.36924 1.26794 0.95456 1.04411 0.91520 0.85118 0.78794 0.75793 0.79189 1.18844 1.20233 1.17537 1.21347 0.94536 0.90072 1.55022 0.89888 1.18497 0.87349 0.83463 0.76446 1.90597 1.15016 1.86550 1.53430 1.45717 1.09008 1.02644 1.81331 1.21294 0.92108 0.88975 0.92386 1.24403 0.81352 0.81004 0.80795 1.90571 1.63501 1.31543 1.59673 1.85507 1.52804 1.35249 1.53892 1.23336 1.00033 1.00192 0.94086 1.22757 0.95209 1.01706 0.95014 1.23225 0.99226 0.94156 0.98172 0.91913 0.76415 0.75467 0.89564 0.92637 0.88729 0.87838 0.88247 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.70 11.83 21.84 0.26 -48.44 15 2 C 0.03 1.81 5.50 85.31 0.47 2.28 15 3 Si 0.99 40.30 29.56 68.60 2.03 42.32 15 4 H -0.26 -10.25 7.11 99.48 0.71 -9.55 15 5 H -0.28 -11.03 7.11 99.48 0.71 -10.32 15 6 H -0.25 -9.58 7.11 99.48 0.71 -8.87 15 7 C -0.57 -31.33 9.54 24.83 0.24 -31.10 15 8 H 0.08 4.08 7.85 -2.91 -0.02 4.06 15 9 C 0.54 29.57 7.10 86.36 0.61 30.18 15 10 O -0.57 -35.50 11.54 19.81 0.23 -35.27 15 11 N -0.73 -31.03 5.21 -428.16 -2.23 -33.25 15 12 C 0.14 5.43 1.11 3.38 0.00 5.43 15 13 C 0.48 20.84 7.44 71.23 0.53 21.37 15 14 O -0.56 -24.07 16.80 21.94 0.37 -23.70 15 15 O -0.47 -22.23 9.16 -43.35 -0.40 -22.63 15 16 C -0.14 -4.72 7.43 31.18 0.23 -4.49 15 17 C -0.11 -2.65 8.00 31.18 0.25 -2.40 15 18 C -0.11 -2.95 7.23 31.12 0.23 -2.73 15 19 H 0.27 14.77 8.29 -92.71 -0.77 14.00 15 20 H 0.40 14.40 8.61 -92.70 -0.80 13.60 15 21 H 0.39 14.80 9.10 -74.06 -0.67 14.13 15 22 H 0.09 2.85 8.09 -2.38 -0.02 2.83 15 23 H 0.05 2.20 8.14 -2.39 -0.02 2.18 15 24 H 0.09 2.15 8.14 -2.38 -0.02 2.13 15 25 H 0.10 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.10 2.23 8.11 -2.39 -0.02 2.21 15 27 H 0.11 2.79 7.38 -2.39 -0.02 2.77 15 Total: -1.00 -73.92 240.61 2.56 -71.36 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.26 Total: 31.06 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 2.56 Total: 18.55 kcal Atomic # 7 Polarization: -79.73 SS G_CDS: -1.97 Total: -81.70 kcal Atomic # 8 Polarization: -81.80 SS G_CDS: 0.20 Total: -81.60 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.32 kcal Total: -73.92 2.56 -71.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060375.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.917 kcal (2) G-P(sol) polarization free energy of solvation -73.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds