Wall clock time and date at job start Sun Mar 29 2020 22:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99686 * 2 1 4 4 H 1.48497 * 109.47480 * 270.27714 * 3 2 1 5 5 H 1.48503 * 109.47176 * 30.27954 * 3 2 1 6 6 H 1.48503 * 109.47035 * 150.27562 * 3 2 1 7 7 C 1.37871 * 120.00481 * 180.27764 * 2 1 3 8 8 H 1.08003 * 119.99774 * 359.72510 * 7 2 1 9 9 C 1.50701 * 120.00343 * 179.72147 * 7 2 1 10 10 N 1.46902 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00050 * 175.06042 * 10 9 7 12 12 C 1.50702 * 110.01586 * 303.25141 * 11 10 9 13 13 O 1.20823 * 119.99753 * 144.12135 * 12 11 10 14 14 O 1.34231 * 120.00160 * 324.13042 * 12 11 10 15 15 C 1.53869 * 110.03238 * 181.86445 * 11 10 9 16 16 C 1.54371 * 106.54789 * 240.72492 * 15 11 10 17 17 C 1.54893 * 104.21308 * 23.57682 * 16 15 11 18 18 C 1.54264 * 110.03346 * 64.64552 * 11 10 9 19 19 H 0.96997 * 120.00457 * 359.71891 * 1 2 3 20 20 H 1.08995 * 109.47376 * 300.00407 * 9 7 2 21 21 H 1.09001 * 109.46663 * 60.00223 * 9 7 2 22 22 H 1.00898 * 111.00092 * 51.10373 * 10 9 7 23 23 H 0.96692 * 117.00237 * 179.97438 * 14 12 11 24 24 H 1.09001 * 110.03423 * 359.97438 * 15 11 10 25 25 H 1.09004 * 110.03759 * 121.42516 * 15 11 10 26 26 H 1.09002 * 110.46574 * 264.89936 * 16 15 11 27 27 H 1.09000 * 110.60742 * 142.31748 * 16 15 11 28 28 H 1.09001 * 110.75583 * 203.75728 * 17 16 15 29 29 H 1.08998 * 110.76072 * 80.38745 * 17 16 15 30 30 H 1.09004 * 110.48507 * 214.34925 * 18 11 10 31 31 H 1.08996 * 110.48632 * 336.99598 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4907 2.0500 -1.4000 5 1 1.4494 2.6510 0.7060 6 1 3.5495 1.4386 0.6942 7 6 2.0046 -1.1939 -0.0058 8 1 1.4646 -2.1293 -0.0058 9 6 3.5116 -1.1939 -0.0121 10 7 4.0013 -2.5788 -0.0182 11 6 5.4645 -2.6193 -0.1425 12 6 5.8967 -1.8883 -1.3874 13 8 6.9218 -1.2487 -1.3872 14 8 5.1429 -1.9475 -2.4965 15 6 5.9490 -4.0788 -0.1934 16 6 6.8806 -4.2754 1.0217 17 6 6.4343 -3.1819 2.0239 18 6 6.1183 -1.9798 1.0998 19 1 -0.4851 0.8400 0.0041 20 1 3.8712 -0.6778 -0.9023 21 1 3.8785 -0.6822 0.8776 22 1 3.5612 -3.1148 -0.7510 23 1 5.4608 -1.4620 -3.2699 24 1 5.0985 -4.7572 -0.1253 25 1 6.4975 -4.2583 -1.1181 26 1 7.9209 -4.1262 0.7325 27 1 6.7440 -5.2670 1.4534 28 1 7.2422 -2.9372 2.7136 29 1 5.5432 -3.4962 2.5672 30 1 7.0355 -1.4599 0.8231 31 1 5.4234 -1.2962 1.5873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:11 Heat of formation + Delta-G solvation = -99.691633 kcal Electronic energy + Delta-G solvation = -14889.064117 eV Core-core repulsion = 12362.876482 eV Total energy + Delta-G solvation = -2526.187636 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.50230 -37.69530 -35.84848 -34.15898 -32.18649 -29.03204 -28.31272 -25.80087 -23.09563 -21.76605 -20.35255 -19.01445 -17.77095 -17.20837 -16.48032 -15.55144 -14.97262 -14.56892 -14.48180 -13.68167 -13.22052 -12.91393 -12.43597 -12.26740 -11.87982 -11.36776 -11.24972 -11.03911 -10.90271 -10.86799 -10.75051 -10.59108 -10.30001 -10.11718 -9.83644 -9.31195 -8.64755 -7.76666 -6.10390 -4.08582 2.47787 3.25547 3.30684 3.34122 3.36731 4.38141 4.62413 4.73371 4.82922 5.19669 5.23723 5.48073 5.60751 5.65886 5.78579 5.85905 5.96825 6.02307 6.17250 6.26529 6.41911 6.56845 6.68329 6.76376 6.93728 7.48960 7.71215 8.13453 8.20094 8.55504 8.96284 9.50919 11.02612 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.010164 C = 0.009509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.900154 B = 2754.196524 C = 2943.872279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.874 3.126 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.515 4.515 8 H 0.081 0.919 9 C 0.158 3.842 10 N -0.648 5.648 11 C 0.123 3.877 12 C 0.457 3.543 13 O -0.529 6.529 14 O -0.509 6.509 15 C -0.107 4.107 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.113 4.113 19 H 0.264 0.736 20 H -0.015 1.015 21 H 0.031 0.969 22 H 0.348 0.652 23 H 0.401 0.599 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.599 -6.225 -0.537 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.130 4.130 3 Si 0.701 3.299 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.553 4.553 8 H 0.099 0.901 9 C 0.031 3.969 10 N -0.280 5.280 11 C 0.028 3.972 12 C 0.297 3.703 13 O -0.417 6.417 14 O -0.319 6.319 15 C -0.145 4.145 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.151 4.151 19 H 0.074 0.926 20 H 0.002 0.998 21 H 0.049 0.951 22 H 0.168 0.832 23 H 0.258 0.742 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 12.560 -6.194 0.487 14.013 hybrid contribution 0.643 1.687 -1.652 2.447 sum 13.204 -4.507 -1.165 14.000 Atomic orbital electron populations 1.69883 1.06087 1.26943 1.50687 1.24857 0.94724 0.98820 0.94637 0.86888 0.80407 0.84074 0.78551 1.20351 1.20954 1.19177 1.20963 0.88492 0.94922 1.50941 0.90084 1.20170 0.97068 0.84698 0.94972 1.60773 0.99225 1.16167 1.51860 1.21902 0.92296 0.94917 0.88065 1.25385 0.80774 0.78542 0.85565 1.90613 1.25874 1.40945 1.84303 1.84657 1.54071 1.70093 1.23082 1.22212 1.00133 0.93510 0.98654 1.22334 0.98657 0.99329 0.95460 1.22403 1.01174 0.94569 0.97052 1.22532 1.00797 0.98391 0.93365 0.92563 0.99780 0.95111 0.83242 0.74159 0.89207 0.92000 0.91853 0.91237 0.91625 0.90394 0.90160 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.80 27.47 -169.99 -4.67 17.13 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.51 -14.52 9.82 -34.44 -0.34 -14.86 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.16 3.81 3.90 -4.97 -0.02 3.79 16 10 N -0.65 -13.00 5.90 -101.26 -0.60 -13.60 16 11 C 0.12 2.11 0.82 -131.64 -0.11 2.00 16 12 C 0.46 8.27 5.60 36.01 0.20 8.48 16 13 O -0.53 -10.45 16.31 -18.75 -0.31 -10.76 16 14 O -0.51 -8.32 12.25 -39.26 -0.48 -8.80 16 15 C -0.11 -1.46 6.18 -25.56 -0.16 -1.62 16 16 C -0.12 -1.43 6.83 -25.01 -0.17 -1.60 16 17 C -0.11 -1.52 6.91 -24.74 -0.17 -1.69 16 18 C -0.11 -1.88 5.79 -25.07 -0.15 -2.02 16 19 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 20 H -0.02 -0.38 5.75 -51.93 -0.30 -0.68 16 21 H 0.03 0.77 5.43 -51.93 -0.28 0.48 16 22 H 0.35 6.86 8.41 -39.29 -0.33 6.53 16 23 H 0.40 4.74 9.10 45.56 0.41 5.15 16 24 H 0.09 1.18 7.88 -51.93 -0.41 0.77 16 25 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.08 1.35 6.80 -51.93 -0.35 0.99 16 31 H 0.09 1.57 6.08 -51.93 -0.32 1.26 16 LS Contribution 254.00 15.07 3.83 3.83 Total: -1.00 -32.09 254.00 -5.71 -37.80 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -3.25 Total: 6.54 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -1.01 Total: -5.55 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.18 Total: -40.19 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: -0.79 Total: -19.56 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.09 -5.71 -37.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.891 kcal (2) G-P(sol) polarization free energy of solvation -32.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds