Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99686 * 2 1 4 4 H 1.48497 * 109.47480 * 270.27714 * 3 2 1 5 5 H 1.48503 * 109.47176 * 30.27954 * 3 2 1 6 6 H 1.48503 * 109.47035 * 150.27562 * 3 2 1 7 7 C 1.37871 * 120.00481 * 180.27764 * 2 1 3 8 8 H 1.08003 * 119.99774 * 359.72510 * 7 2 1 9 9 C 1.50701 * 120.00343 * 179.72147 * 7 2 1 10 10 N 1.46902 * 109.47324 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00050 * 175.06042 * 10 9 7 12 12 C 1.50702 * 110.01586 * 303.25141 * 11 10 9 13 13 O 1.20823 * 119.99753 * 144.12135 * 12 11 10 14 14 O 1.34231 * 120.00160 * 324.13042 * 12 11 10 15 15 C 1.53869 * 110.03238 * 181.86445 * 11 10 9 16 16 C 1.54371 * 106.54789 * 240.72492 * 15 11 10 17 17 C 1.54893 * 104.21308 * 23.57682 * 16 15 11 18 18 C 1.54264 * 110.03346 * 64.64552 * 11 10 9 19 19 H 0.96997 * 120.00457 * 359.71891 * 1 2 3 20 20 H 1.08995 * 109.47376 * 300.00407 * 9 7 2 21 21 H 1.09001 * 109.46663 * 60.00223 * 9 7 2 22 22 H 1.00898 * 111.00092 * 51.10373 * 10 9 7 23 23 H 0.96692 * 117.00237 * 179.97438 * 14 12 11 24 24 H 1.09001 * 110.03423 * 359.97438 * 15 11 10 25 25 H 1.09004 * 110.03759 * 121.42516 * 15 11 10 26 26 H 1.09002 * 110.46574 * 264.89936 * 16 15 11 27 27 H 1.09000 * 110.60742 * 142.31748 * 16 15 11 28 28 H 1.09001 * 110.75583 * 203.75728 * 17 16 15 29 29 H 1.08998 * 110.76072 * 80.38745 * 17 16 15 30 30 H 1.09004 * 110.48507 * 214.34925 * 18 11 10 31 31 H 1.08996 * 110.48632 * 336.99598 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4907 2.0500 -1.4000 5 1 1.4494 2.6510 0.7060 6 1 3.5495 1.4386 0.6942 7 6 2.0046 -1.1939 -0.0058 8 1 1.4646 -2.1293 -0.0058 9 6 3.5116 -1.1939 -0.0121 10 7 4.0013 -2.5788 -0.0182 11 6 5.4645 -2.6193 -0.1425 12 6 5.8967 -1.8883 -1.3874 13 8 6.9218 -1.2487 -1.3872 14 8 5.1429 -1.9475 -2.4965 15 6 5.9490 -4.0788 -0.1934 16 6 6.8806 -4.2754 1.0217 17 6 6.4343 -3.1819 2.0239 18 6 6.1183 -1.9798 1.0998 19 1 -0.4851 0.8400 0.0041 20 1 3.8712 -0.6778 -0.9023 21 1 3.8785 -0.6822 0.8776 22 1 3.5612 -3.1148 -0.7510 23 1 5.4608 -1.4620 -3.2699 24 1 5.0985 -4.7572 -0.1253 25 1 6.4975 -4.2583 -1.1181 26 1 7.9209 -4.1262 0.7325 27 1 6.7440 -5.2670 1.4534 28 1 7.2422 -2.9372 2.7136 29 1 5.5432 -3.4962 2.5672 30 1 7.0355 -1.4599 0.8231 31 1 5.4234 -1.2962 1.5873 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = -123.909882 kcal Electronic energy + Delta-G solvation = -14890.114300 eV Core-core repulsion = 12362.876482 eV Total energy + Delta-G solvation = -2527.237818 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.88354 -38.99144 -37.26540 -35.84795 -34.17245 -30.52599 -29.63535 -27.51150 -24.39887 -23.62143 -21.52202 -20.37351 -19.42360 -18.84918 -18.07960 -16.97247 -16.60151 -16.17554 -15.74940 -15.37509 -14.74218 -14.41770 -14.14061 -13.98326 -13.34536 -12.87266 -12.74298 -12.66378 -12.17461 -12.11227 -12.02397 -11.91036 -11.82437 -11.76124 -11.41548 -11.31408 -10.84819 -9.42771 -8.33732 -6.36928 1.07016 1.28143 1.30628 1.40545 2.03362 2.28220 3.00026 3.29349 3.47709 3.60388 4.13360 4.31028 4.42629 4.48922 4.61977 4.68450 4.79628 4.88811 4.98781 5.01740 5.11352 5.21169 5.24074 5.45914 5.48944 5.53938 5.84604 6.40609 6.50323 6.70790 6.89635 7.26831 8.82589 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.034952 B = 0.010164 C = 0.009509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.900154 B = 2754.196524 C = 2943.872279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.017 3.983 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.258 1.258 7 C -0.522 4.522 8 H 0.047 0.953 9 C 0.173 3.827 10 N -0.648 5.648 11 C 0.115 3.885 12 C 0.456 3.544 13 O -0.549 6.549 14 O -0.512 6.512 15 C -0.105 4.105 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.118 4.118 19 H 0.268 0.732 20 H -0.019 1.019 21 H 0.026 0.974 22 H 0.349 0.651 23 H 0.420 0.580 24 H 0.095 0.905 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.495 -6.485 -0.460 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.761 3.239 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.182 1.182 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.044 3.956 10 N -0.279 5.279 11 C 0.021 3.979 12 C 0.297 3.703 13 O -0.438 6.438 14 O -0.325 6.325 15 C -0.142 4.142 16 C -0.150 4.150 17 C -0.147 4.147 18 C -0.156 4.156 19 H 0.077 0.923 20 H -0.001 1.001 21 H 0.044 0.956 22 H 0.168 0.832 23 H 0.281 0.719 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.112 0.888 28 H 0.105 0.895 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.467 -6.469 0.548 15.857 hybrid contribution 0.019 1.700 -1.720 2.418 sum 14.487 -4.769 -1.172 15.296 Atomic orbital electron populations 1.70013 1.07810 1.28153 1.52110 1.25699 0.95513 1.02632 0.94327 0.85866 0.79377 0.79587 0.79039 1.19480 1.20073 1.18204 1.21220 0.90732 0.93715 1.50340 0.93473 1.19848 0.94278 0.87023 0.94417 1.60659 1.01382 1.13746 1.52151 1.22161 0.90155 0.97448 0.88148 1.25474 0.80552 0.78135 0.86097 1.90604 1.26731 1.41724 1.84770 1.84615 1.53881 1.70310 1.23652 1.22267 1.00862 0.90811 1.00294 1.22350 0.98672 0.99997 0.94007 1.22406 1.01732 0.93481 0.97090 1.22564 0.99890 0.99393 0.93722 0.92253 1.00131 0.95570 0.83154 0.71929 0.88689 0.90865 0.90702 0.88831 0.89472 0.91065 0.90397 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.26 13.96 21.44 0.30 -57.96 16 2 C 0.02 0.97 5.47 84.65 0.46 1.43 16 3 Si 0.94 44.76 27.47 68.60 1.88 46.65 16 4 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 7 C -0.52 -29.89 9.82 25.60 0.25 -29.64 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.93 16 9 C 0.17 8.26 3.90 85.56 0.33 8.60 16 10 N -0.65 -25.63 5.90 -474.27 -2.80 -28.43 16 11 C 0.11 3.77 0.82 3.50 0.00 3.78 16 12 C 0.46 15.81 5.60 71.24 0.40 16.21 16 13 O -0.55 -20.82 16.31 21.97 0.36 -20.46 16 14 O -0.51 -15.95 12.25 -51.43 -0.63 -16.58 16 15 C -0.10 -2.59 6.18 31.35 0.19 -2.39 16 16 C -0.11 -2.28 6.83 31.71 0.22 -2.07 16 17 C -0.11 -2.63 6.91 31.89 0.22 -2.41 16 18 C -0.12 -3.75 5.79 31.67 0.18 -3.57 16 19 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 20 H -0.02 -0.91 5.75 -2.39 -0.01 -0.93 16 21 H 0.03 1.29 5.43 -2.39 -0.01 1.28 16 22 H 0.35 13.64 8.41 -89.70 -0.75 12.88 16 23 H 0.42 9.17 9.10 -74.06 -0.67 8.50 16 24 H 0.09 2.26 7.88 -2.39 -0.02 2.24 16 25 H 0.07 1.66 7.67 -2.39 -0.02 1.64 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.50 6.80 -2.38 -0.02 2.49 16 31 H 0.06 2.22 6.08 -2.39 -0.01 2.21 16 Total: -1.00 -68.57 254.00 1.05 -67.52 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.33 Total: 19.32 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 2.26 Total: -10.05 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.50 Total: -86.39 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.27 Total: -37.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.65 kcal Total: -68.57 1.05 -67.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.391 kcal (2) G-P(sol) polarization free energy of solvation -68.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds