Wall clock time and date at job start Sun Mar 29 2020 22:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99979 * 2 1 4 4 H 1.48491 * 109.47020 * 270.00000 * 3 2 1 5 5 H 1.48501 * 109.46800 * 30.00190 * 3 2 1 6 6 H 1.48503 * 109.46959 * 149.99996 * 3 2 1 7 7 C 1.37874 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00466 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00060 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47575 * 180.02562 * 9 7 2 11 11 C 1.46897 * 111.00527 * 180.02562 * 10 9 7 12 12 H 1.09004 * 110.01684 * 326.38903 * 11 10 9 13 13 C 1.53869 * 110.03641 * 87.82759 * 11 10 9 14 14 C 1.54266 * 106.59800 * 119.28640 * 13 11 10 15 15 C 1.55238 * 104.23333 * 23.61579 * 14 13 11 16 16 H 1.08993 * 110.76342 * 80.31404 * 15 14 13 17 17 C 1.50702 * 110.89800 * 203.79412 * 15 14 13 18 18 O 1.20825 * 119.99730 * 113.21153 * 17 15 14 19 19 O 1.34225 * 119.99759 * 293.21228 * 17 15 14 20 20 C 1.54266 * 110.03377 * 204.99970 * 11 10 9 21 21 H 0.97001 * 119.99934 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47445 * 60.00168 * 9 7 2 23 23 H 1.09005 * 109.47269 * 300.00643 * 9 7 2 24 24 H 1.00899 * 111.00370 * 56.04508 * 10 9 7 25 25 H 1.08999 * 110.04012 * 238.57287 * 13 11 10 26 26 H 1.09006 * 110.02998 * 359.96037 * 13 11 10 27 27 H 1.09005 * 110.48526 * 142.29451 * 14 13 11 28 28 H 1.09006 * 110.48581 * 264.93644 * 14 13 11 29 29 H 0.96700 * 116.99692 * 180.02562 * 19 17 15 30 30 H 1.09002 * 110.48629 * 335.78109 * 20 11 10 31 31 H 1.08998 * 110.48744 * 98.29012 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5054 -4.9070 -0.0011 12 1 0.5776 -4.8286 0.5655 13 6 1.2065 -5.3439 -1.4459 14 6 1.9379 -6.6850 -1.6610 15 6 2.1047 -7.2627 -0.2298 16 1 1.1825 -7.7374 0.1052 17 6 3.2575 -8.2316 -0.1721 18 8 4.2421 -7.9612 0.4739 19 8 3.1905 -9.3948 -0.8384 20 6 2.4080 -5.9979 0.6113 21 1 -0.4850 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8897 24 1 2.8405 -3.5487 0.7808 25 1 0.1332 -5.4781 -1.5810 26 1 1.5803 -4.5974 -2.1467 27 1 1.3346 -7.3545 -2.2744 28 1 2.9121 -6.5188 -2.1209 29 1 3.9543 -9.9840 -0.7711 30 1 3.4581 -5.7207 0.5184 31 1 2.1494 -6.1642 1.6571 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068295.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:10 Heat of formation + Delta-G solvation = -108.861723 kcal Electronic energy + Delta-G solvation = -14035.344986 eV Core-core repulsion = 11508.759705 eV Total energy + Delta-G solvation = -2526.585281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.46316 -37.90402 -36.13753 -34.10849 -32.10750 -28.88988 -28.17719 -25.45653 -23.05510 -21.77793 -20.03258 -19.43142 -18.05954 -16.90851 -16.33076 -15.85066 -15.21295 -14.64100 -14.35894 -13.51622 -13.33919 -13.08099 -12.40621 -11.91151 -11.63431 -11.52156 -11.38538 -11.11934 -10.91287 -10.80456 -10.60738 -10.56829 -10.42642 -10.15011 -9.83976 -9.14408 -8.47230 -7.29895 -6.02414 -4.04189 2.16405 2.99026 3.33362 3.38984 3.43184 4.43750 4.52917 4.71547 4.94405 5.29120 5.33938 5.39763 5.59586 5.62147 5.68619 5.76087 5.97378 6.10701 6.30709 6.36609 6.43586 6.52862 6.69039 7.29243 7.43049 7.80967 7.83842 8.14973 8.41114 8.63483 9.05489 9.60908 11.08724 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.067149 B = 0.005589 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.880118 B = 5008.654335 C = 5202.926424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.514 4.514 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.683 5.683 11 C 0.082 3.918 12 H 0.042 0.958 13 C -0.114 4.114 14 C -0.103 4.103 15 C -0.088 4.088 16 H 0.111 0.889 17 C 0.487 3.513 18 O -0.514 6.514 19 O -0.518 6.518 20 C -0.111 4.111 21 H 0.261 0.739 22 H 0.029 0.971 23 H -0.014 1.014 24 H 0.330 0.670 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.406 0.594 30 H 0.089 0.911 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -15.888 -1.476 16.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.553 4.553 8 H 0.080 0.920 9 C 0.067 3.933 10 N -0.315 5.315 11 C -0.029 4.029 12 H 0.060 0.940 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.107 4.107 16 H 0.129 0.871 17 C 0.329 3.671 18 O -0.402 6.402 19 O -0.330 6.330 20 C -0.148 4.148 21 H 0.071 0.929 22 H 0.047 0.953 23 H 0.004 0.996 24 H 0.147 0.853 25 H 0.079 0.921 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.264 0.736 30 H 0.107 0.893 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.562 -15.391 -2.005 15.731 hybrid contribution 0.524 0.472 0.989 1.215 sum 3.086 -14.920 -1.015 15.269 Atomic orbital electron populations 1.69962 1.06084 1.26761 1.51008 1.24984 0.94866 0.99355 0.95347 0.86485 0.79701 0.83013 0.78123 1.20622 1.21326 1.19850 1.21206 0.93546 0.90300 1.50243 0.91968 1.19602 0.90605 0.87383 0.95746 1.60844 1.20905 1.00846 1.48857 1.22079 0.95361 0.90468 0.94961 0.93992 1.22220 0.99258 0.95725 0.98070 1.22360 1.01574 0.97137 0.93052 1.22085 0.94974 0.93332 1.00351 0.87073 1.23555 0.88555 0.80324 0.74655 1.90717 1.33604 1.75896 1.39983 1.84568 1.48992 1.30633 1.68785 1.22561 1.02283 0.91955 0.98048 0.92937 0.95325 0.99627 0.85253 0.92092 0.89687 0.90906 0.91162 0.73624 0.89277 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.65 9.32 -34.44 -0.32 -14.97 16 8 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 9 C 0.19 5.05 5.27 -4.98 -0.03 5.03 16 10 N -0.68 -14.60 6.15 -106.81 -0.66 -15.25 16 11 C 0.08 1.42 3.25 -66.60 -0.22 1.20 16 12 H 0.04 0.76 7.81 -51.93 -0.41 0.35 16 13 C -0.11 -1.76 6.55 -25.62 -0.17 -1.93 16 14 C -0.10 -1.28 6.28 -24.88 -0.16 -1.44 16 15 C -0.09 -1.07 3.42 -89.59 -0.31 -1.38 16 16 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 17 C 0.49 6.07 7.65 36.01 0.28 6.34 16 18 O -0.51 -8.05 16.48 -18.75 -0.31 -8.36 16 19 O -0.52 -4.88 13.42 -39.24 -0.53 -5.41 16 20 C -0.11 -1.62 5.32 -25.07 -0.13 -1.75 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H -0.01 -0.39 8.07 -51.93 -0.42 -0.81 16 24 H 0.33 6.85 8.31 -39.29 -0.33 6.53 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.08 1.50 7.92 -51.93 -0.41 1.08 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 29 H 0.41 2.08 9.10 45.56 0.41 2.50 16 30 H 0.09 1.45 7.26 -51.93 -0.38 1.07 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 266.05 15.07 4.01 4.01 Total: -1.00 -32.23 266.05 -6.52 -38.75 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -3.60 Total: 3.04 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.15 Total: -7.40 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.08 Total: -41.43 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.84 Total: -13.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.23 -6.52 -38.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068295.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.116 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds