Wall clock time and date at job start Sun Mar 29 2020 21:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 113.28201 * 2 1 4 4 O 1.20824 * 120.00097 * 226.92985 * 3 2 1 5 5 O 1.34234 * 119.99912 * 46.93810 * 3 2 1 6 6 C 1.53495 * 114.20697 * 226.93563 * 2 1 3 7 7 N 1.47066 * 87.98658 * 220.14632 * 6 2 1 8 8 C 1.34780 * 136.06263 * 206.86221 * 7 6 2 9 9 O 1.21687 * 119.99315 * 359.97438 * 8 7 6 10 10 C 1.46377 * 120.00142 * 180.02562 * 8 7 6 11 11 H 1.07995 * 120.00006 * 359.97438 * 10 8 7 12 12 C 1.40048 * 119.99369 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00674 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99545 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47137 * 89.99829 * 14 12 10 16 16 H 1.48498 * 109.47182 * 210.00000 * 14 12 10 17 17 H 1.48499 * 109.47162 * 329.99926 * 14 12 10 18 18 C 1.47067 * 87.88528 * 27.11900 * 7 6 2 19 19 H 1.09001 * 109.47076 * 193.06486 * 1 2 3 20 20 H 1.09002 * 109.47412 * 313.06668 * 1 2 3 21 21 H 1.09001 * 109.47189 * 73.06078 * 1 2 3 22 22 H 0.96694 * 116.99851 * 180.02562 * 5 3 2 23 23 H 1.09005 * 113.46950 * 105.37198 * 6 2 1 24 24 H 1.08998 * 113.47096 * 334.92841 * 6 2 1 25 25 H 0.96998 * 120.00171 * 180.02562 * 13 12 10 26 26 H 1.09007 * 113.46858 * 87.65629 * 18 7 6 27 27 H 1.08993 * 113.47208 * 218.09965 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1256 1.3843 0.0000 4 8 3.0208 1.6568 -0.7644 5 8 1.6618 2.3145 0.8494 6 6 2.1593 -0.9559 -1.0228 7 7 3.1628 -1.3015 -0.0048 8 6 4.4359 -1.7441 -0.0078 9 8 5.0070 -1.9466 -1.0631 10 6 5.1310 -1.9823 1.2581 11 1 4.6240 -1.8030 2.1946 12 6 6.4540 -2.4417 1.2547 13 7 7.0677 -2.6581 0.1216 14 14 7.3414 -2.7449 2.8703 15 1 7.1173 -4.1479 3.3024 16 1 8.7962 -2.5096 2.6878 17 1 6.8162 -1.8184 3.9052 18 6 2.1638 -0.9579 1.0183 19 1 -0.3633 -1.0011 0.2323 20 1 -0.3634 0.7017 0.7508 21 1 -0.3633 0.2994 -0.9831 22 1 2.0749 3.1880 0.8121 23 1 2.5791 -0.4477 -1.8910 24 1 1.5114 -1.7894 -1.2941 25 1 7.9839 -2.9766 0.1194 26 1 1.5168 -1.7918 1.2907 27 1 2.5871 -0.4513 1.8856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604501744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:57 Heat of formation + Delta-G solvation = -90.316379 kcal Electronic energy + Delta-G solvation = -14360.951105 eV Core-core repulsion = 11699.336916 eV Total energy + Delta-G solvation = -2661.614189 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.68493 -38.44560 -35.96580 -35.69079 -32.50733 -31.06847 -27.14252 -25.57621 -24.96680 -23.96303 -19.90141 -18.85797 -17.55726 -16.73239 -16.11901 -15.56769 -15.28179 -14.21106 -14.16389 -14.09923 -13.30836 -12.92535 -12.24985 -12.12329 -11.78934 -11.64642 -11.42008 -11.16211 -11.01856 -10.96233 -10.48405 -10.26134 -10.13863 -9.92760 -8.87698 -7.67817 -7.35781 -6.21830 -4.67171 2.49492 3.13078 3.18476 3.19330 3.23357 4.00485 4.30644 4.46553 4.53330 5.10787 5.22423 5.44706 5.74268 5.75651 5.88125 5.91097 6.04883 6.11039 6.20714 6.48539 6.66390 6.73749 7.41200 8.05894 8.18756 8.42126 8.99152 9.54562 10.55258 10.74271 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.041360 B = 0.008995 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.816346 B = 3112.063990 C = 3240.728885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.111 4.111 3 C 0.506 3.494 4 O -0.494 6.494 5 O -0.518 6.518 6 C 0.125 3.875 7 N -0.662 5.662 8 C 0.586 3.414 9 O -0.568 6.568 10 C -0.537 4.537 11 H 0.068 0.932 12 C 0.086 3.914 13 N -0.768 5.768 14 Si 0.912 3.088 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.265 1.265 18 C 0.133 3.867 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.062 0.938 22 H 0.406 0.594 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.270 0.730 26 H 0.082 0.918 27 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 5.644 4.123 14.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C 0.347 3.653 4 O -0.380 6.380 5 O -0.330 6.330 6 C 0.000 4.000 7 N -0.404 5.404 8 C 0.394 3.606 9 O -0.449 6.449 10 C -0.574 4.574 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.396 5.396 14 Si 0.736 3.264 15 H -0.196 1.196 16 H -0.203 1.203 17 H -0.189 1.189 18 C 0.008 3.992 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.081 0.919 22 H 0.264 0.736 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.413 5.058 3.212 12.890 hybrid contribution 0.660 0.462 0.822 1.151 sum -10.752 5.520 4.034 12.742 Atomic orbital electron populations 1.21617 0.91046 1.03288 1.02696 1.22076 0.96637 0.88967 1.03638 1.22475 0.79877 0.86209 0.76788 1.90760 1.27932 1.80313 1.38954 1.84486 1.63694 1.25229 1.59587 1.22561 0.89604 0.93894 0.93928 1.50033 1.11046 1.73502 1.05772 1.17978 0.76106 0.75655 0.90835 1.90625 1.64133 1.56093 1.34093 1.20778 0.97815 1.47421 0.91340 0.91396 1.25735 0.97192 0.93199 0.97257 1.70017 1.11178 1.32061 1.26356 0.86308 0.78638 0.79252 0.82197 1.19611 1.20338 1.18886 1.22557 0.89637 0.94100 0.92934 0.90931 0.91144 0.91921 0.73568 0.90586 0.90503 0.91935 0.90053 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 9.25 37.15 0.34 -1.04 15 2 C -0.11 -1.75 1.48 -155.15 -0.23 -1.97 15 3 C 0.51 8.65 7.36 36.01 0.26 8.91 15 4 O -0.49 -10.69 16.74 -18.75 -0.31 -11.00 15 5 O -0.52 -6.61 13.00 -39.27 -0.51 -7.12 15 6 C 0.12 2.41 7.53 -8.51 -0.06 2.34 15 7 N -0.66 -15.92 3.58 -186.86 -0.67 -16.59 15 8 C 0.59 17.77 8.00 -12.98 -0.10 17.66 15 9 O -0.57 -19.62 15.80 5.20 0.08 -19.54 15 10 C -0.54 -15.76 9.38 -35.63 -0.33 -16.10 15 11 H 0.07 1.83 7.76 -52.49 -0.41 1.42 15 12 C 0.09 2.47 5.50 -17.37 -0.10 2.37 15 13 N -0.77 -23.68 11.83 55.55 0.66 -23.02 15 14 Si 0.91 20.52 29.56 -169.99 -5.02 15.50 15 15 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 16 H -0.28 -6.12 7.11 56.52 0.40 -5.71 15 17 H -0.26 -5.76 7.11 56.52 0.40 -5.35 15 18 C 0.13 2.36 7.47 -8.51 -0.06 2.30 15 19 H 0.07 0.67 7.91 -51.93 -0.41 0.26 15 20 H 0.07 0.69 7.80 -51.93 -0.41 0.28 15 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 15 22 H 0.41 3.49 9.10 45.56 0.41 3.90 15 23 H 0.08 1.63 7.52 -51.93 -0.39 1.24 15 24 H 0.08 1.26 8.10 -51.93 -0.42 0.84 15 25 H 0.27 7.50 8.29 -40.82 -0.34 7.16 15 26 H 0.08 1.21 7.94 -51.93 -0.41 0.80 15 27 H 0.07 1.28 8.11 -51.93 -0.42 0.86 15 LS Contribution 248.46 15.07 3.74 3.74 Total: -1.00 -38.84 248.46 -4.33 -43.17 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -2.01 Total: 0.39 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: -0.28 Total: 14.48 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -0.01 Total: -39.62 kcal Atomic # 8 Polarization: -36.92 SS G_CDS: -0.74 Total: -37.66 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -38.84 -4.33 -43.17 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604501744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.150 kcal (2) G-P(sol) polarization free energy of solvation -38.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds