Wall clock time and date at job start Sun Mar 29 2020 21:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 113.28201 * 2 1 4 4 O 1.20824 * 120.00097 * 226.92985 * 3 2 1 5 5 O 1.34234 * 119.99912 * 46.93810 * 3 2 1 6 6 C 1.53495 * 114.20697 * 226.93563 * 2 1 3 7 7 N 1.47066 * 87.98658 * 220.14632 * 6 2 1 8 8 C 1.34780 * 136.06263 * 206.86221 * 7 6 2 9 9 O 1.21687 * 119.99315 * 359.97438 * 8 7 6 10 10 C 1.46377 * 120.00142 * 180.02562 * 8 7 6 11 11 H 1.07995 * 120.00006 * 359.97438 * 10 8 7 12 12 C 1.40048 * 119.99369 * 180.02562 * 10 8 7 13 13 N 1.30669 * 120.00674 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99545 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47137 * 89.99829 * 14 12 10 16 16 H 1.48498 * 109.47182 * 210.00000 * 14 12 10 17 17 H 1.48499 * 109.47162 * 329.99926 * 14 12 10 18 18 C 1.47067 * 87.88528 * 27.11900 * 7 6 2 19 19 H 1.09001 * 109.47076 * 193.06486 * 1 2 3 20 20 H 1.09002 * 109.47412 * 313.06668 * 1 2 3 21 21 H 1.09001 * 109.47189 * 73.06078 * 1 2 3 22 22 H 0.96694 * 116.99851 * 180.02562 * 5 3 2 23 23 H 1.09005 * 113.46950 * 105.37198 * 6 2 1 24 24 H 1.08998 * 113.47096 * 334.92841 * 6 2 1 25 25 H 0.96998 * 120.00171 * 180.02562 * 13 12 10 26 26 H 1.09007 * 113.46858 * 87.65629 * 18 7 6 27 27 H 1.08993 * 113.47208 * 218.09965 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1256 1.3843 0.0000 4 8 3.0208 1.6568 -0.7644 5 8 1.6618 2.3145 0.8494 6 6 2.1593 -0.9559 -1.0228 7 7 3.1628 -1.3015 -0.0048 8 6 4.4359 -1.7441 -0.0078 9 8 5.0070 -1.9466 -1.0631 10 6 5.1310 -1.9823 1.2581 11 1 4.6240 -1.8030 2.1946 12 6 6.4540 -2.4417 1.2547 13 7 7.0677 -2.6581 0.1216 14 14 7.3414 -2.7449 2.8703 15 1 7.1173 -4.1479 3.3024 16 1 8.7962 -2.5096 2.6878 17 1 6.8162 -1.8184 3.9052 18 6 2.1638 -0.9579 1.0183 19 1 -0.3633 -1.0011 0.2323 20 1 -0.3634 0.7017 0.7508 21 1 -0.3633 0.2994 -0.9831 22 1 2.0749 3.1880 0.8121 23 1 2.5791 -0.4477 -1.8910 24 1 1.5114 -1.7894 -1.2941 25 1 7.9839 -2.9766 0.1194 26 1 1.5168 -1.7918 1.2907 27 1 2.5871 -0.4513 1.8856 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604501744.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:57 Heat of formation + Delta-G solvation = -122.111803 kcal Electronic energy + Delta-G solvation = -14362.329858 eV Core-core repulsion = 11699.336916 eV Total energy + Delta-G solvation = -2662.992942 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 213.083 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.12350 -39.99540 -38.02596 -37.07317 -34.70451 -32.56371 -29.10054 -27.01916 -26.64911 -25.40308 -21.60903 -20.43942 -18.92449 -18.64586 -17.81498 -17.18818 -16.87734 -16.07541 -15.79635 -15.72287 -14.68568 -14.39585 -13.72990 -13.71459 -13.36870 -13.13065 -13.01915 -12.75679 -12.66740 -12.59403 -12.29840 -12.03502 -11.52185 -11.41243 -10.98676 -9.95748 -9.28199 -8.35606 -6.93036 1.13077 1.36138 1.39208 1.54728 1.98283 2.17806 2.39253 2.59134 3.09688 3.50198 3.88870 4.09951 4.25159 4.51773 4.57073 4.60671 4.93291 4.97985 5.04322 5.07670 5.24933 5.39097 5.58105 5.89375 6.36024 6.79389 6.98331 7.51824 8.37879 8.61161 Molecular weight = 213.08amu Principal moments of inertia in cm(-1) A = 0.041360 B = 0.008995 C = 0.008638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.816346 B = 3112.063990 C = 3240.728885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.089 4.089 3 C 0.506 3.494 4 O -0.552 6.552 5 O -0.497 6.497 6 C 0.114 3.886 7 N -0.687 5.687 8 C 0.565 3.435 9 O -0.634 6.634 10 C -0.565 4.565 11 H 0.087 0.913 12 C 0.024 3.976 13 N -0.825 5.825 14 Si 1.005 2.995 15 H -0.255 1.255 16 H -0.272 1.272 17 H -0.248 1.248 18 C 0.133 3.867 19 H 0.097 0.903 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.427 0.573 23 H 0.041 0.959 24 H 0.112 0.888 25 H 0.276 0.724 26 H 0.123 0.877 27 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 5.818 6.821 16.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.090 4.090 3 C 0.349 3.651 4 O -0.442 6.442 5 O -0.310 6.310 6 C -0.009 4.009 7 N -0.426 5.426 8 C 0.373 3.627 9 O -0.521 6.521 10 C -0.601 4.601 11 H 0.105 0.895 12 C -0.190 4.190 13 N -0.454 5.454 14 Si 0.823 3.177 15 H -0.179 1.179 16 H -0.197 1.197 17 H -0.171 1.171 18 C 0.010 3.990 19 H 0.115 0.885 20 H 0.107 0.893 21 H 0.093 0.907 22 H 0.288 0.712 23 H 0.060 0.940 24 H 0.129 0.871 25 H 0.086 0.914 26 H 0.140 0.860 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.584 5.282 5.956 15.745 hybrid contribution 1.176 0.503 -0.041 1.280 sum -12.408 5.785 5.915 14.914 Atomic orbital electron populations 1.21670 0.86145 1.05536 1.04234 1.21953 0.99826 0.87115 1.00152 1.22864 0.78787 0.87327 0.76120 1.90761 1.30488 1.81487 1.41463 1.84429 1.62941 1.25984 1.57640 1.22903 0.88980 0.95958 0.93084 1.49798 1.10882 1.71894 1.09999 1.18350 0.78177 0.75648 0.90493 1.90552 1.66759 1.58941 1.35880 1.21315 0.98969 1.47973 0.91866 0.89482 1.27121 0.97884 0.91903 1.02133 1.70205 1.11970 1.33215 1.30017 0.84924 0.76829 0.80001 0.75920 1.17920 1.19689 1.17128 1.22958 0.88239 0.95804 0.92048 0.88452 0.89270 0.90651 0.71202 0.94040 0.87077 0.91371 0.85984 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 9.25 71.98 0.67 -1.32 15 2 C -0.09 -2.57 1.48 -52.60 -0.08 -2.65 15 3 C 0.51 16.69 7.36 71.24 0.52 17.21 15 4 O -0.55 -24.47 16.74 21.97 0.37 -24.10 15 5 O -0.50 -11.28 13.00 -51.46 -0.67 -11.95 15 6 C 0.11 4.39 7.53 83.18 0.63 5.02 15 7 N -0.69 -33.35 3.58 -863.30 -3.09 -36.44 15 8 C 0.57 35.57 8.00 86.36 0.69 36.26 15 9 O -0.63 -46.40 15.80 -4.31 -0.07 -46.47 15 10 C -0.56 -33.72 9.38 24.83 0.23 -33.49 15 11 H 0.09 4.64 7.76 -2.91 -0.02 4.62 15 12 C 0.02 1.41 5.50 85.30 0.47 1.88 15 13 N -0.82 -52.81 11.83 21.84 0.26 -52.55 15 14 Si 1.01 41.99 29.56 68.60 2.03 44.02 15 15 H -0.25 -9.93 7.11 99.48 0.71 -9.22 15 16 H -0.27 -10.97 7.11 99.48 0.71 -10.27 15 17 H -0.25 -9.58 7.11 99.48 0.71 -8.88 15 18 C 0.13 4.40 7.47 83.18 0.62 5.02 15 19 H 0.10 1.23 7.91 -2.39 -0.02 1.21 15 20 H 0.09 1.24 7.80 -2.39 -0.02 1.23 15 21 H 0.07 1.14 8.14 -2.39 -0.02 1.12 15 22 H 0.43 6.25 9.10 -74.06 -0.67 5.58 15 23 H 0.04 1.86 7.52 -2.38 -0.02 1.84 15 24 H 0.11 3.46 8.10 -2.39 -0.02 3.44 15 25 H 0.28 15.90 8.29 -92.71 -0.77 15.13 15 26 H 0.12 3.10 7.94 -2.38 -0.02 3.08 15 27 H 0.07 2.33 8.11 -2.39 -0.02 2.31 15 Total: -1.00 -91.49 248.46 3.10 -88.38 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.52 Total: 11.19 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 3.75 Total: 27.93 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -2.83 Total: -88.99 kcal Atomic # 8 Polarization: -82.15 SS G_CDS: -0.37 Total: -82.52 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -91.49 3.10 -88.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604501744.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.729 kcal (2) G-P(sol) polarization free energy of solvation -91.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds