Wall clock time and date at job start Sun Mar 29 2020 21:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99546 * 2 1 4 4 H 1.48502 * 109.47290 * 240.00058 * 3 2 1 5 5 H 1.48503 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47152 * 120.00401 * 3 2 1 7 7 C 1.40047 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99483 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99874 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00256 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47359 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47226 * 304.99800 * 13 12 11 15 15 O 1.42900 * 109.47323 * 65.00025 * 13 12 11 16 16 C 1.53003 * 109.46913 * 184.99785 * 13 12 11 17 17 C 1.53786 * 113.61503 * 80.86227 * 16 13 12 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 13 19 19 C 1.53781 * 113.61337 * 178.47021 * 16 13 12 20 20 H 0.96997 * 120.00318 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00251 * 0.02562 * 11 9 7 22 22 H 1.09005 * 109.47098 * 59.99932 * 12 11 9 23 23 H 1.09007 * 109.47021 * 300.00734 * 12 11 9 24 24 H 0.96698 * 114.00069 * 60.00040 * 15 13 12 25 25 H 1.09002 * 112.85017 * 309.66610 * 16 13 12 26 26 H 1.08992 * 113.61675 * 254.61398 * 17 16 13 27 27 H 1.09000 * 113.60973 * 25.51686 * 17 16 13 28 28 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 29 29 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 30 30 H 1.08999 * 113.61567 * 334.48261 * 19 16 13 31 31 H 1.08998 * 113.61196 * 105.38615 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0016 12 6 1.2168 -4.9164 -0.0022 13 6 2.2111 -6.0792 -0.0027 14 1 2.8952 -5.9720 -0.8444 15 8 2.9534 -6.0718 1.2184 16 6 1.4503 -7.4007 -0.1289 17 6 1.0425 -7.7413 -1.5721 18 6 1.4156 -9.2001 -1.2469 19 6 2.3650 -8.6360 -0.1767 20 1 -0.4850 0.8400 0.0004 21 1 2.9191 -3.6476 -0.0020 22 1 0.5898 -4.9736 -0.8920 23 1 0.5904 -4.9748 0.8880 24 1 2.4075 -6.1637 2.0112 25 1 0.6340 -7.4893 0.5879 26 1 -0.0188 -7.5948 -1.7721 27 1 1.6834 -7.2845 -2.3262 28 1 1.9297 -9.7113 -2.0609 29 1 0.5907 -9.7819 -0.8357 30 1 3.3667 -8.4234 -0.5500 31 1 2.3705 -9.2112 0.7492 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639200642.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:19 Heat of formation + Delta-G solvation = -84.049517 kcal Electronic energy + Delta-G solvation = -14105.528872 eV Core-core repulsion = 11580.019529 eV Total energy + Delta-G solvation = -2525.509343 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.38588 -37.22082 -35.93722 -33.00454 -32.14620 -29.13465 -26.42697 -25.59885 -24.29884 -21.56222 -19.92549 -19.27094 -17.26618 -16.54422 -15.67457 -15.34313 -14.91000 -14.43832 -13.94152 -13.68586 -12.97338 -12.87968 -12.45798 -12.17602 -11.89926 -11.47136 -11.19952 -11.13200 -10.82033 -10.68357 -10.50252 -10.42622 -10.23486 -10.20735 -9.45359 -8.81332 -7.58163 -7.44825 -6.14997 -4.60142 3.18593 3.22958 3.25270 4.12320 4.31946 4.57773 4.62717 4.63602 4.78435 5.02092 5.04204 5.33144 5.49067 5.61079 5.70784 5.74470 5.75922 5.86425 5.89942 5.98736 6.20734 6.40836 6.43422 6.59015 7.46972 7.83892 7.99693 8.15840 8.37563 9.06077 9.59539 10.64035 10.82728 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068142 B = 0.005932 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.806732 B = 4718.669214 C = 4914.792198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.763 5.763 12 C 0.105 3.895 13 C 0.107 3.893 14 H 0.098 0.902 15 O -0.558 6.558 16 C -0.142 4.142 17 C -0.133 4.133 18 C -0.145 4.145 19 C -0.125 4.125 20 H 0.268 0.732 21 H 0.383 0.617 22 H 0.055 0.945 23 H 0.047 0.953 24 H 0.373 0.627 25 H 0.092 0.908 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 -13.519 -0.739 14.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.583 4.583 8 H 0.085 0.915 9 C 0.358 3.642 10 O -0.467 6.467 11 N -0.419 5.419 12 C -0.021 4.021 13 C 0.048 3.952 14 H 0.116 0.884 15 O -0.363 6.363 16 C -0.161 4.161 17 C -0.171 4.171 18 C -0.182 4.182 19 C -0.163 4.163 20 H 0.079 0.921 21 H 0.215 0.785 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.220 0.780 25 H 0.110 0.890 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.804 -13.344 -1.155 13.923 hybrid contribution 0.328 0.733 0.347 0.874 sum 4.131 -12.611 -0.808 13.295 Atomic orbital electron populations 1.70016 1.07069 1.27296 1.35517 1.25708 0.94606 1.00268 0.92608 0.86433 0.79802 0.81025 0.79454 1.19292 1.20583 1.19278 1.20867 0.93588 0.89451 1.54375 0.91472 1.18223 0.87177 0.82531 0.76313 1.90588 1.14144 1.86960 1.55055 1.46038 1.08737 1.04537 1.82574 1.21531 0.94410 0.85105 1.01072 1.22220 0.93213 0.92198 0.87591 0.88382 1.86537 1.37765 1.96317 1.15686 1.23222 0.99159 0.95204 0.98529 1.22915 1.01822 0.96089 0.96246 1.22891 0.99629 0.96534 0.99161 1.22788 0.98160 0.96381 0.98953 0.92113 0.78507 0.92691 0.93433 0.78035 0.89008 0.91215 0.89868 0.91665 0.90422 0.89998 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.55 11.83 55.55 0.66 -22.90 16 2 C 0.09 2.50 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.52 29.56 -169.99 -5.02 15.49 16 4 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.55 -15.86 9.54 -35.63 -0.34 -16.20 16 8 H 0.07 1.79 7.85 -52.48 -0.41 1.38 16 9 C 0.55 16.24 7.75 -12.99 -0.10 16.14 16 10 O -0.58 -19.39 15.02 5.20 0.08 -19.31 16 11 N -0.76 -17.70 5.50 -61.72 -0.34 -18.04 16 12 C 0.10 2.01 5.30 -4.04 -0.02 1.99 16 13 C 0.11 1.55 2.75 -26.73 -0.07 1.48 16 14 H 0.10 1.44 7.98 -51.93 -0.41 1.02 16 15 O -0.56 -8.18 13.11 -35.23 -0.46 -8.64 16 16 C -0.14 -1.69 3.31 -89.80 -0.30 -1.98 16 17 C -0.13 -1.49 7.59 -25.77 -0.20 -1.69 16 18 C -0.14 -1.38 8.09 -25.78 -0.21 -1.59 16 19 C -0.13 -1.30 7.47 -25.92 -0.19 -1.50 16 20 H 0.27 7.44 8.29 -40.82 -0.34 7.10 16 21 H 0.38 8.11 8.45 -40.82 -0.35 7.77 16 22 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 23 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 24 H 0.37 4.47 9.05 45.56 0.41 4.88 16 25 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 27 H 0.08 0.93 7.99 -51.93 -0.41 0.52 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 268.28 15.07 4.04 4.04 Total: -1.00 -34.79 268.28 -6.26 -41.04 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -3.69 Total: 9.25 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -1.53 Total: -0.94 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.32 Total: -40.93 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.38 Total: -27.95 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -34.79 -6.26 -41.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639200642.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.005 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds