Wall clock time and date at job start Sun Mar 29 2020 21:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86798 * 119.99546 * 2 1 4 4 H 1.48502 * 109.47290 * 240.00058 * 3 2 1 5 5 H 1.48503 * 109.47522 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47152 * 120.00401 * 3 2 1 7 7 C 1.40047 * 120.00230 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99483 * 179.97438 * 7 2 1 9 9 C 1.46372 * 120.00032 * 359.97438 * 7 2 1 10 10 O 1.21684 * 120.00131 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99874 * 179.97438 * 9 7 2 12 12 C 1.46501 * 120.00256 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47359 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47226 * 304.99800 * 13 12 11 15 15 O 1.42900 * 109.47323 * 65.00025 * 13 12 11 16 16 C 1.53003 * 109.46913 * 184.99785 * 13 12 11 17 17 C 1.53786 * 113.61503 * 80.86227 * 16 13 12 18 18 C 1.54049 * 86.98426 * 140.01654 * 17 16 13 19 19 C 1.53781 * 113.61337 * 178.47021 * 16 13 12 20 20 H 0.96997 * 120.00318 * 359.97438 * 1 2 3 21 21 H 0.96997 * 120.00251 * 0.02562 * 11 9 7 22 22 H 1.09005 * 109.47098 * 59.99932 * 12 11 9 23 23 H 1.09007 * 109.47021 * 300.00734 * 12 11 9 24 24 H 0.96698 * 114.00069 * 60.00040 * 15 13 12 25 25 H 1.09002 * 112.85017 * 309.66610 * 16 13 12 26 26 H 1.08992 * 113.61675 * 254.61398 * 17 16 13 27 27 H 1.09000 * 113.60973 * 25.51686 * 17 16 13 28 28 H 1.09005 * 113.62125 * 220.02158 * 18 17 16 29 29 H 1.08996 * 113.68970 * 89.12734 * 18 17 16 30 30 H 1.08999 * 113.61567 * 334.48261 * 19 16 13 31 31 H 1.08998 * 113.61196 * 105.38615 * 19 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0944 1.6966 -1.2125 5 1 1.2756 2.7465 0.0006 6 1 3.0945 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 3.0871 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0584 -2.4805 -0.0005 11 7 1.9492 -3.6476 -0.0016 12 6 1.2168 -4.9164 -0.0022 13 6 2.2111 -6.0792 -0.0027 14 1 2.8952 -5.9720 -0.8444 15 8 2.9534 -6.0718 1.2184 16 6 1.4503 -7.4007 -0.1289 17 6 1.0425 -7.7413 -1.5721 18 6 1.4156 -9.2001 -1.2469 19 6 2.3650 -8.6360 -0.1767 20 1 -0.4850 0.8400 0.0004 21 1 2.9191 -3.6476 -0.0020 22 1 0.5898 -4.9736 -0.8920 23 1 0.5904 -4.9748 0.8880 24 1 2.4075 -6.1637 2.0112 25 1 0.6340 -7.4893 0.5879 26 1 -0.0188 -7.5948 -1.7721 27 1 1.6834 -7.2845 -2.3262 28 1 1.9297 -9.7113 -2.0609 29 1 0.5907 -9.7819 -0.8357 30 1 3.3667 -8.4234 -0.5500 31 1 2.3705 -9.2112 0.7492 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639200642.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:18 Heat of formation + Delta-G solvation = -111.812819 kcal Electronic energy + Delta-G solvation = -14106.732779 eV Core-core repulsion = 11580.019529 eV Total energy + Delta-G solvation = -2526.713250 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.48847 -39.17975 -37.23163 -34.97289 -34.28445 -30.65750 -28.37695 -26.49286 -25.70013 -22.83084 -21.80271 -20.38948 -19.30015 -17.72435 -17.48325 -16.83726 -16.18872 -15.97353 -15.72364 -15.17097 -14.68234 -14.35008 -13.89610 -13.31704 -13.21649 -13.13289 -12.78017 -12.67715 -12.62798 -12.24735 -12.05966 -11.85112 -11.35348 -11.12908 -10.92871 -10.64635 -9.87705 -9.49845 -8.30194 -6.87285 1.39856 1.43594 1.55444 2.24729 2.45676 2.99679 3.41662 3.60146 3.67759 3.80428 3.89277 3.99252 4.16798 4.28923 4.44988 4.77680 4.79289 4.87558 4.89310 5.06999 5.11599 5.14807 5.30433 5.37264 5.60653 5.86215 6.21043 6.25885 6.78267 6.85268 7.53014 8.47265 8.65895 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068142 B = 0.005932 C = 0.005696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.806732 B = 4718.669214 C = 4914.792198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.028 3.972 3 Si 1.000 3.000 4 H -0.254 1.254 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.751 5.751 12 C 0.105 3.895 13 C 0.125 3.875 14 H 0.101 0.899 15 O -0.565 6.565 16 C -0.143 4.143 17 C -0.141 4.141 18 C -0.134 4.134 19 C -0.118 4.118 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.041 0.959 23 H 0.035 0.965 24 H 0.385 0.615 25 H 0.095 0.905 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.118 -13.820 -0.727 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.187 4.187 3 Si 0.819 3.181 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.613 4.613 8 H 0.104 0.896 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.406 5.406 12 C -0.020 4.020 13 C 0.066 3.934 14 H 0.119 0.881 15 O -0.372 6.372 16 C -0.162 4.162 17 C -0.179 4.179 18 C -0.171 4.171 19 C -0.156 4.156 20 H 0.085 0.915 21 H 0.228 0.772 22 H 0.059 0.941 23 H 0.054 0.946 24 H 0.234 0.766 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.099 0.901 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.566 -13.702 -1.135 14.833 hybrid contribution -0.226 0.764 0.358 0.873 sum 5.339 -12.939 -0.777 14.018 Atomic orbital electron populations 1.70182 1.09576 1.29069 1.36414 1.27001 0.95544 1.05009 0.91097 0.85045 0.78187 0.74560 0.80314 1.17786 1.19736 1.17840 1.21426 0.94728 0.90226 1.54892 0.89584 1.18642 0.86844 0.84492 0.76120 1.90539 1.16190 1.88070 1.57455 1.45742 1.09286 1.04608 1.80931 1.21722 0.95326 0.85192 0.99784 1.22049 0.92144 0.91419 0.87819 0.88143 1.86510 1.38218 1.96258 1.16198 1.23229 0.99568 0.94208 0.99239 1.22985 1.01538 0.97691 0.95660 1.22857 0.99665 0.95423 0.99144 1.22758 0.97839 0.95224 0.99766 0.91504 0.77176 0.94108 0.94648 0.76650 0.88715 0.91735 0.90078 0.90445 0.89410 0.90114 0.90708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.37 11.83 21.84 0.26 -51.11 16 2 C 0.03 1.62 5.50 85.30 0.47 2.09 16 3 Si 1.00 41.62 29.56 68.60 2.03 43.65 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.58 -33.68 9.54 24.83 0.24 -33.44 16 8 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 9 C 0.53 32.16 7.75 86.36 0.67 32.83 16 10 O -0.63 -43.77 15.02 -4.30 -0.06 -43.83 16 11 N -0.75 -35.26 5.50 -467.41 -2.57 -37.83 16 12 C 0.10 4.10 5.30 86.38 0.46 4.56 16 13 C 0.13 3.52 2.75 30.59 0.08 3.61 16 14 H 0.10 2.82 7.98 -2.39 -0.02 2.80 16 15 O -0.57 -15.73 13.11 -148.98 -1.95 -17.69 16 16 C -0.14 -3.21 3.31 -10.26 -0.03 -3.24 16 17 C -0.14 -2.99 7.59 31.21 0.24 -2.75 16 18 C -0.13 -2.23 8.09 31.21 0.25 -1.97 16 19 C -0.12 -2.17 7.47 31.12 0.23 -1.94 16 20 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 21 H 0.39 16.58 8.45 -92.71 -0.78 15.80 16 22 H 0.04 1.71 8.09 -2.38 -0.02 1.69 16 23 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 24 H 0.38 8.70 9.05 -74.06 -0.67 8.03 16 25 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 1.74 7.99 -2.39 -0.02 1.72 16 28 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 31 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -76.38 268.28 -0.01 -76.40 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -0.32 Total: 30.68 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 2.60 Total: -0.26 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -2.31 Total: -88.94 kcal Atomic # 8 Polarization: -59.50 SS G_CDS: -2.02 Total: -61.52 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -76.38 -0.01 -76.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639200642.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.417 kcal (2) G-P(sol) polarization free energy of solvation -76.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds