Wall clock time and date at job start Sun Mar 29 2020 21:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86805 * 119.99617 * 2 1 4 4 H 1.48499 * 109.47023 * 274.98376 * 3 2 1 5 5 H 1.48497 * 109.47291 * 34.98057 * 3 2 1 6 6 H 1.48493 * 109.46929 * 154.98410 * 3 2 1 7 7 C 1.40042 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99573 * 186.15295 * 7 2 1 9 9 C 1.46372 * 120.00381 * 6.14884 * 7 2 1 10 10 O 1.21688 * 119.99587 * 353.94046 * 9 7 2 11 11 N 1.34779 * 120.00505 * 173.94063 * 9 7 2 12 12 C 1.46493 * 120.00008 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46928 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47141 * 60.00308 * 13 12 11 15 15 O 1.42894 * 109.47074 * 299.99901 * 13 12 11 16 16 C 1.52998 * 109.46953 * 179.97438 * 13 12 11 17 17 C 1.53787 * 113.61419 * 185.00050 * 16 13 12 18 18 C 1.53776 * 87.08317 * 220.02351 * 17 16 13 19 19 C 1.53785 * 87.17591 * 25.38647 * 18 17 16 20 20 H 0.96991 * 120.00399 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99261 * 359.97438 * 11 9 7 22 22 H 1.09003 * 109.47450 * 60.00000 * 12 11 9 23 23 H 1.09005 * 109.47404 * 299.99868 * 12 11 9 24 24 H 0.96702 * 114.00478 * 299.99820 * 15 13 12 25 25 H 1.08999 * 112.85648 * 316.19367 * 16 13 12 26 26 H 1.08997 * 113.61731 * 105.47221 * 17 16 13 27 27 H 1.09003 * 113.60950 * 334.56976 * 17 16 13 28 28 H 1.08992 * 113.61726 * 139.98198 * 18 17 16 29 29 H 1.09002 * 113.61369 * 270.80088 * 18 17 16 30 30 H 1.08999 * 113.60928 * 89.15616 * 19 18 17 31 31 H 1.08993 * 113.61888 * 220.06567 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6201 0.8026 6 1 3.5869 1.4122 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0647 -2.4828 -0.1366 11 7 1.9613 -3.6343 -0.2570 12 6 1.2352 -4.8993 -0.3929 13 6 2.2353 -6.0508 -0.5147 14 1 2.8607 -6.0849 0.3774 15 8 3.0577 -5.8476 -1.6655 16 6 1.4770 -7.3721 -0.6560 17 6 2.3907 -8.6091 -0.6635 18 6 1.4780 -9.1793 -1.7620 19 6 1.1171 -7.7256 -2.1106 20 1 -0.4850 0.8399 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6101 -4.8655 -1.2852 23 1 0.6075 -5.0541 0.4848 24 1 2.5668 -5.8069 -2.4977 25 1 0.6371 -7.4540 0.0338 26 1 2.3633 -9.1779 0.2658 27 1 3.4051 -8.4004 -1.0035 28 1 2.0190 -9.6968 -2.5541 29 1 0.6383 -9.7570 -1.3756 30 1 1.7827 -7.2751 -2.8468 31 1 0.0629 -7.5822 -2.3476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639200648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:22 Heat of formation + Delta-G solvation = -81.212099 kcal Electronic energy + Delta-G solvation = -14163.673711 eV Core-core repulsion = 11638.287408 eV Total energy + Delta-G solvation = -2525.386303 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.60886 -37.18782 -35.68281 -33.00760 -32.15687 -29.25566 -26.45985 -25.70909 -24.33260 -21.58429 -19.75876 -19.11708 -17.28220 -16.76505 -15.76832 -15.31391 -15.11532 -14.33126 -13.96804 -13.61431 -13.05914 -12.87513 -12.44299 -12.19189 -11.91627 -11.33431 -11.16513 -11.10096 -10.85646 -10.70870 -10.52964 -10.42639 -10.19913 -10.13198 -9.52228 -8.81711 -7.57707 -7.44642 -6.16117 -4.59614 3.16486 3.23457 3.27446 4.12977 4.45829 4.52398 4.62230 4.63411 4.71749 4.81371 5.06342 5.45497 5.51391 5.61853 5.68261 5.73106 5.75394 5.84813 5.85631 5.95750 6.21052 6.40751 6.45745 6.57238 7.47483 7.80942 8.00461 8.16335 8.38429 9.06361 9.59918 10.63661 10.82427 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076363 B = 0.005903 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.580138 B = 4742.366888 C = 4927.336992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.585 6.585 11 N -0.763 5.763 12 C 0.105 3.895 13 C 0.106 3.894 14 H 0.101 0.899 15 O -0.557 6.557 16 C -0.141 4.141 17 C -0.132 4.132 18 C -0.140 4.140 19 C -0.142 4.142 20 H 0.267 0.733 21 H 0.384 0.616 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.372 0.628 25 H 0.097 0.903 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.559 -13.380 -2.685 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.086 0.914 9 C 0.357 3.643 10 O -0.468 6.468 11 N -0.419 5.419 12 C -0.021 4.021 13 C 0.046 3.954 14 H 0.118 0.882 15 O -0.364 6.364 16 C -0.161 4.161 17 C -0.170 4.170 18 C -0.178 4.178 19 C -0.179 4.179 20 H 0.078 0.922 21 H 0.216 0.784 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.221 0.779 25 H 0.116 0.884 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.103 0.897 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.935 -13.284 -2.232 14.033 hybrid contribution 0.334 0.777 -0.354 0.916 sum 4.269 -12.507 -2.585 13.466 Atomic orbital electron populations 1.70032 1.07097 1.27184 1.35555 1.25707 0.94579 1.00289 0.92594 0.86362 0.80254 0.81492 0.78655 1.19818 1.20487 1.18872 1.20901 0.94136 0.89621 1.53639 0.91384 1.18242 0.87118 0.82508 0.76389 1.90588 1.14165 1.86555 1.55486 1.46033 1.08840 1.05377 1.81611 1.21519 0.94424 0.85292 1.00893 1.22044 0.92175 0.92057 0.89086 0.88153 1.86545 1.37595 1.95273 1.17002 1.23265 0.99420 0.95159 0.98213 1.22904 0.98821 0.96409 0.98833 1.22755 0.99702 0.96333 0.98982 1.22971 1.01647 0.96579 0.96688 0.92184 0.78396 0.93331 0.92826 0.77939 0.88449 0.91828 0.89548 0.91697 0.90472 0.89698 0.91317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.54 11.85 55.55 0.66 -22.88 16 2 C 0.09 2.50 5.49 -17.37 -0.10 2.41 16 3 Si 0.91 20.52 29.56 -169.99 -5.03 15.49 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 6 H -0.26 -5.78 7.11 56.52 0.40 -5.38 16 7 C -0.55 -15.86 9.53 -35.64 -0.34 -16.20 16 8 H 0.07 1.82 7.85 -52.48 -0.41 1.41 16 9 C 0.55 16.23 7.74 -12.99 -0.10 16.13 16 10 O -0.58 -19.40 15.05 5.20 0.08 -19.32 16 11 N -0.76 -17.66 5.44 -61.72 -0.34 -17.99 16 12 C 0.10 2.01 5.33 -4.04 -0.02 1.99 16 13 C 0.11 1.53 3.10 -26.73 -0.08 1.45 16 14 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 15 O -0.56 -8.13 12.45 -35.23 -0.44 -8.57 16 16 C -0.14 -1.68 3.59 -89.71 -0.32 -2.00 16 17 C -0.13 -1.37 7.57 -25.92 -0.20 -1.57 16 18 C -0.14 -1.33 8.08 -25.92 -0.21 -1.54 16 19 C -0.14 -1.52 7.36 -25.82 -0.19 -1.71 16 20 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 21 H 0.38 8.13 8.33 -40.82 -0.34 7.79 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 24 H 0.37 4.66 6.86 45.56 0.31 4.97 16 25 H 0.10 1.15 8.13 -51.93 -0.42 0.73 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.95 7.96 -51.93 -0.41 0.53 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.87 5.87 -51.93 -0.30 0.56 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 263.75 15.07 3.97 3.97 Total: -1.00 -34.59 263.75 -6.32 -40.91 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -3.67 Total: 9.43 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -1.56 Total: -1.05 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.32 Total: -40.87 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.36 Total: -27.89 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.03 Total: 15.49 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -34.59 -6.32 -40.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639200648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.305 kcal (2) G-P(sol) polarization free energy of solvation -34.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds