Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86805 * 119.99617 * 2 1 4 4 H 1.48499 * 109.47023 * 274.98376 * 3 2 1 5 5 H 1.48497 * 109.47291 * 34.98057 * 3 2 1 6 6 H 1.48493 * 109.46929 * 154.98410 * 3 2 1 7 7 C 1.40042 * 120.00267 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99573 * 186.15295 * 7 2 1 9 9 C 1.46372 * 120.00381 * 6.14884 * 7 2 1 10 10 O 1.21688 * 119.99587 * 353.94046 * 9 7 2 11 11 N 1.34779 * 120.00505 * 173.94063 * 9 7 2 12 12 C 1.46493 * 120.00008 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.46928 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.47141 * 60.00308 * 13 12 11 15 15 O 1.42894 * 109.47074 * 299.99901 * 13 12 11 16 16 C 1.52998 * 109.46953 * 179.97438 * 13 12 11 17 17 C 1.53787 * 113.61419 * 185.00050 * 16 13 12 18 18 C 1.53776 * 87.08317 * 220.02351 * 17 16 13 19 19 C 1.53785 * 87.17591 * 25.38647 * 18 17 16 20 20 H 0.96991 * 120.00399 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99261 * 359.97438 * 11 9 7 22 22 H 1.09003 * 109.47450 * 60.00000 * 12 11 9 23 23 H 1.09005 * 109.47404 * 299.99868 * 12 11 9 24 24 H 0.96702 * 114.00478 * 299.99820 * 15 13 12 25 25 H 1.08999 * 112.85648 * 316.19367 * 16 13 12 26 26 H 1.08997 * 113.61731 * 105.47221 * 17 16 13 27 27 H 1.09003 * 113.60950 * 334.56976 * 17 16 13 28 28 H 1.08992 * 113.61726 * 139.98198 * 18 17 16 29 29 H 1.09002 * 113.61369 * 270.80088 * 18 17 16 30 30 H 1.08999 * 113.60928 * 89.15616 * 19 18 17 31 31 H 1.08993 * 113.61888 * 220.06567 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3948 5 1 1.4947 2.6201 0.8026 6 1 3.5869 1.4122 0.5920 7 6 2.0070 -1.2128 0.0005 8 1 3.0824 -1.2153 0.1008 9 6 1.2816 -2.4769 -0.1347 10 8 0.0647 -2.4828 -0.1366 11 7 1.9613 -3.6343 -0.2570 12 6 1.2352 -4.8993 -0.3929 13 6 2.2353 -6.0508 -0.5147 14 1 2.8607 -6.0849 0.3774 15 8 3.0577 -5.8476 -1.6655 16 6 1.4770 -7.3721 -0.6560 17 6 2.3907 -8.6091 -0.6635 18 6 1.4780 -9.1793 -1.7620 19 6 1.1171 -7.7256 -2.1106 20 1 -0.4850 0.8399 -0.0004 21 1 2.9313 -3.6294 -0.2558 22 1 0.6101 -4.8655 -1.2852 23 1 0.6075 -5.0541 0.4848 24 1 2.5668 -5.8069 -2.4977 25 1 0.6371 -7.4540 0.0338 26 1 2.3633 -9.1779 0.2658 27 1 3.4051 -8.4004 -1.0035 28 1 2.0190 -9.6968 -2.5541 29 1 0.6383 -9.7570 -1.3756 30 1 1.7827 -7.2751 -2.8468 31 1 0.0629 -7.5822 -2.3476 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639200648.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = -108.408209 kcal Electronic energy + Delta-G solvation = -14164.853023 eV Core-core repulsion = 11638.287408 eV Total energy + Delta-G solvation = -2526.565615 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68962 -39.20069 -36.93886 -34.96109 -34.28643 -30.77609 -28.40997 -26.60755 -25.71501 -22.83994 -21.75267 -20.11154 -19.29965 -17.93016 -17.49398 -16.85350 -16.43852 -15.98022 -15.69108 -15.01781 -14.75014 -14.35377 -13.90571 -13.29438 -13.26664 -13.09685 -12.81607 -12.66815 -12.61924 -12.11595 -12.01075 -11.79428 -11.37864 -11.06544 -10.94205 -10.71986 -9.87314 -9.49447 -8.31248 -6.86621 1.40043 1.41305 1.57608 2.24712 2.45597 3.02281 3.47748 3.59920 3.61606 3.75566 3.86548 3.97546 4.18965 4.32613 4.44291 4.75598 4.82669 4.90632 4.91851 5.01606 5.10426 5.15149 5.31262 5.38722 5.62029 5.86818 6.21621 6.26330 6.72444 6.85611 7.53683 8.47234 8.65762 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.076363 B = 0.005903 C = 0.005681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 366.580138 B = 4742.366888 C = 4927.336992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.029 3.971 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.535 3.465 10 O -0.635 6.635 11 N -0.751 5.751 12 C 0.105 3.895 13 C 0.123 3.877 14 H 0.105 0.895 15 O -0.562 6.562 16 C -0.146 4.146 17 C -0.125 4.125 18 C -0.131 4.131 19 C -0.146 4.146 20 H 0.275 0.725 21 H 0.395 0.605 22 H 0.036 0.964 23 H 0.040 0.960 24 H 0.381 0.619 25 H 0.097 0.903 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.286 -13.624 -2.946 15.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.186 4.186 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.612 4.612 8 H 0.104 0.896 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.405 5.405 12 C -0.021 4.021 13 C 0.063 3.937 14 H 0.123 0.877 15 O -0.370 6.370 16 C -0.165 4.165 17 C -0.163 4.163 18 C -0.169 4.169 19 C -0.183 4.183 20 H 0.085 0.915 21 H 0.229 0.771 22 H 0.054 0.946 23 H 0.058 0.942 24 H 0.231 0.769 25 H 0.115 0.885 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.706 -13.583 -2.503 14.944 hybrid contribution -0.222 0.790 -0.280 0.867 sum 5.484 -12.793 -2.783 14.194 Atomic orbital electron populations 1.70189 1.09600 1.29015 1.36437 1.26998 0.95517 1.05012 0.91095 0.84976 0.78878 0.74988 0.79236 1.18705 1.19586 1.17195 1.21445 0.95199 0.90405 1.54200 0.89594 1.18655 0.86782 0.84429 0.76228 1.90540 1.16217 1.87675 1.57881 1.45730 1.09357 1.05430 1.79984 1.21710 0.95384 0.85337 0.99624 1.21876 0.91160 0.91217 0.89409 0.87723 1.86528 1.37804 1.95263 1.17441 1.23278 0.99737 0.94175 0.99274 1.22865 0.98370 0.95297 0.99746 1.22732 0.99768 0.95516 0.98849 1.23037 1.01615 0.97776 0.95881 0.91503 0.77074 0.94601 0.94187 0.76888 0.88524 0.90762 0.89839 0.90536 0.89594 0.89247 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.32 11.85 21.83 0.26 -51.06 16 2 C 0.03 1.64 5.49 85.30 0.47 2.10 16 3 Si 1.00 41.65 29.56 68.60 2.03 43.68 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 7 C -0.58 -33.65 9.53 24.83 0.24 -33.41 16 8 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 9 C 0.53 32.13 7.74 86.36 0.67 32.79 16 10 O -0.64 -43.78 15.05 -4.31 -0.06 -43.84 16 11 N -0.75 -35.14 5.44 -467.41 -2.54 -37.69 16 12 C 0.10 4.09 5.33 86.38 0.46 4.55 16 13 C 0.12 3.45 3.10 30.60 0.09 3.54 16 14 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 15 O -0.56 -15.60 12.45 -148.98 -1.86 -17.45 16 16 C -0.15 -3.26 3.59 -10.21 -0.04 -3.30 16 17 C -0.13 -2.31 7.57 31.12 0.24 -2.07 16 18 C -0.13 -2.16 8.08 31.12 0.25 -1.91 16 19 C -0.15 -2.90 7.36 31.18 0.23 -2.67 16 20 H 0.28 15.45 8.29 -92.72 -0.77 14.68 16 21 H 0.40 16.59 8.33 -92.71 -0.77 15.82 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.38 9.06 6.86 -74.06 -0.51 8.56 16 25 H 0.10 2.20 8.13 -2.39 -0.02 2.18 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 27 H 0.08 1.62 7.96 -2.39 -0.02 1.60 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.10 16 29 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.68 5.87 -2.39 -0.01 1.67 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.91 263.75 0.29 -75.61 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.14 Total: 31.14 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 2.61 Total: -0.38 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -2.29 Total: -88.75 kcal Atomic # 8 Polarization: -59.38 SS G_CDS: -1.92 Total: -61.30 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -75.91 0.29 -75.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639200648.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.793 kcal (2) G-P(sol) polarization free energy of solvation -75.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds