Wall clock time and date at job start Sun Mar 29 2020 21:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41387 * 126.80043 * 2 1 4 4 C 1.35448 * 103.98533 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77710 * 179.97438 * 4 3 2 6 6 S 1.81394 * 109.46854 * 90.00606 * 5 4 3 7 7 C 1.81399 * 102.99894 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47147 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99709 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00040 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99653 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47245 * 60.00334 * 12 10 8 14 14 H 1.48496 * 109.47065 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47180 * 300.00097 * 12 10 8 16 16 O 1.34047 * 106.44509 * 0.24757 * 4 3 2 17 17 N 1.20921 * 111.56655 * 359.56208 * 16 4 3 18 18 H 1.08997 * 109.47282 * 89.99637 * 1 2 3 19 19 H 1.09000 * 109.47283 * 209.99763 * 1 2 3 20 20 H 1.09008 * 109.47504 * 329.99486 * 1 2 3 21 21 H 1.08001 * 128.00655 * 0.04406 * 3 2 1 22 22 H 1.09002 * 109.46755 * 330.00530 * 5 4 3 23 23 H 1.08998 * 109.46859 * 210.00296 * 5 4 3 24 24 H 1.09001 * 109.47190 * 299.99732 * 7 6 5 25 25 H 1.09004 * 109.47089 * 59.99865 * 7 6 5 26 26 H 0.97006 * 119.99966 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 16 5.4245 1.6758 1.7085 7 6 6.9793 2.5874 1.5032 8 6 7.5484 2.9216 2.8580 9 1 7.0271 2.6158 3.7531 10 6 8.7351 3.6169 2.9548 11 7 9.3701 3.9888 1.8649 12 14 9.4402 4.0318 4.6342 13 1 9.6967 2.7777 5.3869 14 1 10.7136 4.7769 4.4661 15 1 8.4709 4.8701 5.3846 16 8 3.4537 -0.7253 -0.0064 17 7 2.2868 -1.0423 -0.0007 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5139 21 1 2.0709 2.1744 0.0007 22 1 4.7647 2.3211 -0.5152 23 1 5.6656 0.7859 -0.5156 24 1 7.6907 1.9728 0.9514 25 1 6.7904 3.5084 0.9515 26 1 10.2052 4.4777 1.9330 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001641190224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:07 Heat of formation + Delta-G solvation = 43.688468 kcal Electronic energy + Delta-G solvation = -11315.019265 eV Core-core repulsion = 9101.968833 eV Total energy + Delta-G solvation = -2213.050432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.76701 -34.70605 -33.26726 -33.18798 -28.67066 -28.65809 -27.62997 -23.18069 -22.89862 -20.10509 -17.54906 -17.19782 -16.44505 -15.37782 -14.59542 -14.53877 -14.09813 -13.44405 -13.07183 -13.02092 -12.84145 -12.52893 -12.23793 -12.03856 -11.03819 -10.87295 -10.85046 -10.33161 -9.92465 -9.70492 -9.14345 -8.89396 -8.65727 -6.83482 -6.24369 -4.29132 1.36091 2.21991 2.75196 3.19802 3.26105 3.29348 3.33561 3.72033 4.24587 4.31946 4.49845 5.08843 5.13045 5.20821 5.29336 5.37024 5.55999 5.61420 5.79886 5.87877 6.16608 7.00620 7.02408 7.69764 7.94019 8.37125 8.72294 9.34360 10.86763 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082475 B = 0.005491 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.413995 B = 5097.665934 C = 5193.426853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.012 3.988 3 C -0.225 4.225 4 C 0.008 3.992 5 C -0.023 4.023 6 S -0.281 6.281 7 C 0.089 3.911 8 C -0.515 4.515 9 H 0.067 0.933 10 C 0.067 3.933 11 N -0.892 5.892 12 Si 0.908 3.092 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.273 1.273 16 O 0.101 5.899 17 N -0.370 5.370 18 H 0.078 0.922 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.172 0.828 22 H 0.108 0.892 23 H 0.099 0.901 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.290 -3.710 -5.055 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.146 4.146 3 C -0.249 4.249 4 C -0.056 4.056 5 C -0.171 4.171 6 S -0.054 6.054 7 C -0.057 4.057 8 C -0.554 4.554 9 H 0.085 0.915 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.735 3.265 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.199 1.199 16 O 0.035 5.965 17 N -0.076 5.076 18 H 0.096 0.904 19 H 0.093 0.907 20 H 0.100 0.900 21 H 0.189 0.811 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.829 -5.237 -4.200 14.480 hybrid contribution 1.041 1.517 -0.301 1.865 sum -11.788 -3.720 -4.502 13.155 Atomic orbital electron populations 1.20128 0.86085 1.03687 1.03085 1.23554 0.98910 0.88983 1.03189 1.22355 0.90881 1.01166 1.10503 1.23740 0.97195 0.83554 1.01106 1.21663 0.92898 1.00876 1.01654 1.87044 1.35698 1.76670 1.05954 1.21141 0.87242 0.95832 1.01513 1.20607 1.06896 1.36964 0.90977 0.91450 1.24952 0.96151 0.95090 0.97536 1.69935 1.16980 1.38270 1.27831 0.86389 0.78226 0.78760 0.83163 1.19850 1.21010 1.19862 1.84818 1.21428 1.22668 1.67559 1.73815 0.89380 1.24198 1.20203 0.90385 0.90722 0.90042 0.81053 0.87416 0.88247 0.94234 0.94279 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.68 10.47 36.00 0.38 -0.30 15 2 C 0.01 0.17 7.33 -82.10 -0.60 -0.43 15 3 C -0.22 -3.12 11.06 -39.38 -0.44 -3.56 15 4 C 0.01 0.13 6.75 -35.30 -0.24 -0.11 15 5 C -0.02 -0.37 6.50 36.01 0.23 -0.13 15 6 S -0.28 -5.95 21.64 -107.50 -2.33 -8.28 15 7 C 0.09 2.24 5.70 36.01 0.21 2.44 15 8 C -0.52 -14.23 9.13 -34.44 -0.31 -14.55 15 9 H 0.07 1.87 7.71 -52.49 -0.40 1.46 15 10 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 11 N -0.89 -25.40 13.29 55.43 0.74 -24.66 15 12 Si 0.91 21.06 29.54 -169.99 -5.02 16.04 15 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 15 15 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 16 O 0.10 1.70 11.20 17.16 0.19 1.89 15 17 N -0.37 -6.02 12.07 33.42 0.40 -5.62 15 18 H 0.08 0.61 8.14 -51.93 -0.42 0.19 15 19 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 20 H 0.08 0.63 8.14 -51.92 -0.42 0.20 15 21 H 0.17 1.96 8.06 -52.49 -0.42 1.53 15 22 H 0.11 1.54 8.14 -51.92 -0.42 1.11 15 23 H 0.10 1.51 8.14 -51.93 -0.42 1.08 15 24 H 0.04 1.02 8.14 -51.92 -0.42 0.60 15 25 H 0.04 1.00 8.14 -51.92 -0.42 0.58 15 26 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 252.52 15.07 3.81 3.81 Total: -1.00 -29.67 252.52 -6.00 -35.68 By element: Atomic # 1 Polarization: -1.04 SS G_CDS: -2.92 Total: -3.96 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: -0.87 Total: -14.90 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 1.14 Total: -30.29 kcal Atomic # 8 Polarization: 1.70 SS G_CDS: 0.19 Total: 1.89 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 16 Polarization: -5.95 SS G_CDS: -2.33 Total: -8.28 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -29.67 -6.00 -35.68 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.365 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds