Wall clock time and date at job start Sun Mar 29 2020 21:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41387 * 126.80043 * 2 1 4 4 C 1.35448 * 103.98533 * 180.02562 * 3 2 1 5 5 C 1.50700 * 126.77710 * 179.97438 * 4 3 2 6 6 S 1.81394 * 109.46854 * 90.00606 * 5 4 3 7 7 C 1.81399 * 102.99894 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47147 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00275 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99709 * 179.97438 * 8 7 6 11 11 N 1.31508 * 120.00040 * 0.02562 * 10 8 7 12 12 Si 1.86803 * 119.99653 * 179.97438 * 10 8 7 13 13 H 1.48500 * 109.47245 * 60.00334 * 12 10 8 14 14 H 1.48496 * 109.47065 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47180 * 300.00097 * 12 10 8 16 16 O 1.34047 * 106.44509 * 0.24757 * 4 3 2 17 17 N 1.20921 * 111.56655 * 359.56208 * 16 4 3 18 18 H 1.08997 * 109.47282 * 89.99637 * 1 2 3 19 19 H 1.09000 * 109.47283 * 209.99763 * 1 2 3 20 20 H 1.09008 * 109.47504 * 329.99486 * 1 2 3 21 21 H 1.08001 * 128.00655 * 0.04406 * 3 2 1 22 22 H 1.09002 * 109.46755 * 330.00530 * 5 4 3 23 23 H 1.08998 * 109.46859 * 210.00296 * 5 4 3 24 24 H 1.09001 * 109.47190 * 299.99732 * 7 6 5 25 25 H 1.09004 * 109.47089 * 59.99865 * 7 6 5 26 26 H 0.97006 * 119.99966 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 -0.0006 5 6 4.9021 1.3697 -0.0014 6 16 5.4245 1.6758 1.7085 7 6 6.9793 2.5874 1.5032 8 6 7.5484 2.9216 2.8580 9 1 7.0271 2.6158 3.7531 10 6 8.7351 3.6169 2.9548 11 7 9.3701 3.9888 1.8649 12 14 9.4402 4.0318 4.6342 13 1 9.6967 2.7777 5.3869 14 1 10.7136 4.7769 4.4661 15 1 8.4709 4.8701 5.3846 16 8 3.4537 -0.7253 -0.0064 17 7 2.2868 -1.0423 -0.0007 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3634 -0.8900 0.5138 20 1 -0.3634 0.8900 0.5139 21 1 2.0709 2.1744 0.0007 22 1 4.7647 2.3211 -0.5152 23 1 5.6656 0.7859 -0.5156 24 1 7.6907 1.9728 0.9514 25 1 6.7904 3.5084 0.9515 26 1 10.2052 4.4777 1.9330 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001641190224.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:07 Heat of formation + Delta-G solvation = 26.458710 kcal Electronic energy + Delta-G solvation = -11315.766403 eV Core-core repulsion = 9101.968833 eV Total energy + Delta-G solvation = -2213.797570 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.92043 -35.77488 -35.29142 -34.45577 -30.69600 -29.56139 -28.90781 -25.19586 -24.07103 -21.23700 -18.85253 -18.64872 -18.17282 -17.10264 -16.35361 -15.72598 -15.37770 -14.68371 -14.47949 -14.30728 -14.14526 -13.97413 -13.69391 -13.36550 -12.72155 -12.63075 -12.22525 -12.10760 -11.65395 -10.97796 -10.86944 -10.73607 -10.26811 -8.55596 -8.33185 -6.46043 0.04703 1.04138 1.40052 1.43825 1.44177 1.53669 1.89191 2.06033 2.37551 3.02002 3.27039 3.38206 3.94537 4.06610 4.26660 4.49784 4.56312 4.72169 4.89687 4.91191 4.95526 4.96324 5.26566 5.57011 5.88393 6.60560 7.20969 7.21961 8.78253 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.082475 B = 0.005491 C = 0.005390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 339.413995 B = 5097.665934 C = 5193.426853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.016 3.984 3 C -0.212 4.212 4 C -0.012 4.012 5 C -0.006 4.006 6 S -0.299 6.299 7 C 0.093 3.907 8 C -0.540 4.540 9 H 0.061 0.939 10 C 0.018 3.982 11 N -0.923 5.923 12 Si 0.973 3.027 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.266 1.266 16 O 0.076 5.924 17 N -0.395 5.395 18 H 0.098 0.902 19 H 0.077 0.923 20 H 0.103 0.897 21 H 0.199 0.801 22 H 0.131 0.869 23 H 0.107 0.893 24 H 0.021 0.979 25 H 0.026 0.974 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.686 -3.288 -4.869 14.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.143 4.143 3 C -0.236 4.236 4 C -0.076 4.076 5 C -0.154 4.154 6 S -0.071 6.071 7 C -0.054 4.054 8 C -0.578 4.578 9 H 0.079 0.921 10 C -0.183 4.183 11 N -0.561 5.561 12 Si 0.797 3.203 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.191 1.191 16 O 0.014 5.986 17 N -0.105 5.105 18 H 0.116 0.884 19 H 0.096 0.904 20 H 0.122 0.878 21 H 0.216 0.784 22 H 0.149 0.851 23 H 0.125 0.875 24 H 0.039 0.961 25 H 0.044 0.956 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.206 -4.813 -4.013 15.527 hybrid contribution 1.331 1.337 -0.448 1.939 sum -12.875 -3.476 -4.461 14.062 Atomic orbital electron populations 1.20354 0.82949 1.04952 1.04774 1.24302 1.00831 0.88188 1.00952 1.22801 0.90025 1.02500 1.08281 1.23728 0.97484 0.83548 1.02876 1.21643 0.93559 1.02388 0.97804 1.86888 1.33320 1.75923 1.11005 1.20813 0.89052 0.95423 1.00085 1.20942 1.07610 1.37478 0.91811 0.92128 1.25846 0.96387 0.94696 1.01391 1.70029 1.17415 1.38746 1.29916 0.85369 0.77738 0.78694 0.78514 1.19366 1.20070 1.19088 1.84791 1.22007 1.23229 1.68608 1.73825 0.89500 1.25475 1.21658 0.88356 0.90413 0.87836 0.78384 0.85101 0.87465 0.96087 0.95587 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.47 71.23 0.75 -0.38 15 2 C 0.02 0.41 7.33 43.58 0.32 0.73 15 3 C -0.21 -5.34 11.06 22.40 0.25 -5.09 15 4 C -0.01 -0.37 6.75 25.04 0.17 -0.20 15 5 C -0.01 -0.18 6.50 71.24 0.46 0.28 15 6 S -0.30 -12.65 21.64 -56.49 -1.22 -13.87 15 7 C 0.09 4.78 5.70 71.24 0.41 5.18 15 8 C -0.54 -30.23 9.13 25.60 0.23 -30.00 15 9 H 0.06 3.40 7.71 -2.91 -0.02 3.38 15 10 C 0.02 1.00 5.46 84.66 0.46 1.46 15 11 N -0.92 -52.97 13.29 21.45 0.28 -52.68 15 12 Si 0.97 42.99 29.54 68.60 2.03 45.01 15 13 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 14 H -0.28 -11.68 7.11 99.48 0.71 -10.98 15 15 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 16 O 0.08 2.52 11.20 71.57 0.80 3.32 15 17 N -0.39 -12.43 12.07 -49.56 -0.60 -13.03 15 18 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 19 H 0.08 1.18 8.14 -2.39 -0.02 1.17 15 20 H 0.10 1.17 8.14 -2.38 -0.02 1.15 15 21 H 0.20 3.78 8.06 -2.91 -0.02 3.76 15 22 H 0.13 3.49 8.14 -2.39 -0.02 3.47 15 23 H 0.11 3.18 8.14 -2.39 -0.02 3.16 15 24 H 0.02 1.12 8.14 -2.39 -0.02 1.10 15 25 H 0.03 1.36 8.14 -2.39 -0.02 1.34 15 26 H 0.27 14.56 8.31 -92.70 -0.77 13.79 15 Total: -1.00 -63.86 252.52 5.51 -58.35 By element: Atomic # 1 Polarization: -0.23 SS G_CDS: 1.17 Total: 0.93 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.05 Total: -28.03 kcal Atomic # 7 Polarization: -65.40 SS G_CDS: -0.31 Total: -65.71 kcal Atomic # 8 Polarization: 2.52 SS G_CDS: 0.80 Total: 3.32 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: -12.65 SS G_CDS: -1.22 Total: -13.87 kcal Total: -63.86 5.51 -58.35 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001641190224.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.806 kcal (2) G-P(sol) polarization free energy of solvation -63.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds