Wall clock time and date at job start Sun Mar 29 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.55616 * 2 1 4 4 C 1.53300 * 109.50961 * 239.87604 * 2 1 3 5 5 N 1.47149 * 108.38389 * 292.38241 * 4 2 1 6 6 C 1.34780 * 120.98543 * 129.48994 * 5 4 2 7 7 O 1.21686 * 120.00052 * 175.29552 * 6 5 4 8 8 C 1.46376 * 119.99648 * 355.28985 * 6 5 4 9 9 H 1.07997 * 119.99684 * 7.64602 * 8 6 5 10 10 C 1.40050 * 119.99643 * 187.64349 * 8 6 5 11 11 N 1.30666 * 120.00373 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99603 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47337 * 90.00299 * 12 10 8 14 14 H 1.48509 * 109.46854 * 210.00249 * 12 10 8 15 15 H 1.48502 * 109.47135 * 330.00037 * 12 10 8 16 16 C 1.47162 * 118.03627 * 309.46154 * 5 4 2 17 17 C 1.53297 * 108.38182 * 50.53949 * 16 5 4 18 18 H 1.08997 * 109.55167 * 67.64594 * 17 16 5 19 19 C 1.52996 * 109.51093 * 187.77897 * 17 16 5 20 20 O 1.42958 * 109.51020 * 120.13329 * 2 1 3 21 21 H 1.09000 * 109.46695 * 299.87422 * 1 2 3 22 22 H 1.09001 * 109.47074 * 59.86361 * 1 2 3 23 23 H 1.08994 * 109.47405 * 179.87392 * 1 2 3 24 24 H 1.09001 * 109.68108 * 172.65890 * 4 2 1 25 25 H 1.08998 * 109.68263 * 52.09941 * 4 2 1 26 26 H 0.96992 * 120.00330 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.68002 * 290.81797 * 16 5 4 28 28 H 1.08999 * 109.68018 * 170.26300 * 16 5 4 29 29 H 1.09000 * 109.47277 * 179.74719 * 19 17 16 30 30 H 1.09007 * 109.46604 * 299.73935 * 19 17 16 31 31 H 1.08996 * 109.47568 * 59.74089 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 1.6958 -2.1507 -1.1338 6 6 1.0714 -2.7971 -2.1382 7 8 0.8701 -3.9945 -2.0588 8 6 0.6354 -2.0586 -3.3244 9 1 0.9209 -1.0249 -3.4520 10 6 -0.1520 -2.6926 -4.2937 11 7 -0.4977 -3.9431 -4.1390 12 14 -0.7078 -1.7503 -5.8078 13 1 0.3024 -1.9044 -6.8853 14 1 -2.0128 -2.2856 -6.2726 15 1 -0.8551 -0.3119 -5.4694 16 6 2.0520 -2.8499 0.1112 17 6 1.5395 -2.0212 1.2947 18 1 0.4496 -2.0284 1.3002 19 6 2.0614 -2.6204 2.6021 20 8 2.0075 -0.6765 1.1654 21 1 -0.3633 0.5119 0.8911 22 1 -0.3633 0.5160 -0.8888 23 1 -0.3634 -1.0276 -0.0023 24 1 3.1241 -0.6148 -1.3209 25 1 1.5704 -0.3041 -2.1377 26 1 -1.0433 -4.3821 -4.8101 27 1 3.1350 -2.9533 0.1771 28 1 1.5870 -3.8356 0.1245 29 1 1.7003 -2.0281 3.4429 30 1 1.7041 -3.6456 2.6999 31 1 3.1513 -2.6145 2.5950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000090914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:34 Heat of formation + Delta-G solvation = -82.752997 kcal Electronic energy + Delta-G solvation = -15050.151976 eV Core-core repulsion = 12524.698854 eV Total energy + Delta-G solvation = -2525.453121 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.41401 -36.71295 -33.40463 -33.08723 -32.36045 -29.61510 -27.24866 -26.01470 -24.51408 -22.21572 -20.06649 -18.81616 -16.82220 -16.03440 -15.68240 -14.90008 -14.74269 -14.32872 -14.07743 -13.52119 -12.61533 -12.53550 -12.25984 -11.93590 -11.72896 -11.40451 -11.38725 -11.35431 -10.97800 -10.91889 -10.64779 -10.28078 -10.10129 -9.82664 -9.34901 -8.89022 -7.63364 -7.19368 -6.24535 -4.68907 3.10717 3.17670 3.20289 4.01451 4.11596 4.49238 4.51607 5.23255 5.33188 5.46941 5.53080 5.58198 5.69166 5.78894 5.84025 6.00539 6.15667 6.21299 6.27186 6.34119 6.42141 6.46308 6.57155 6.72177 7.40693 7.51860 7.65156 8.07527 8.30002 8.97727 9.37934 10.52740 10.71059 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043801 B = 0.009973 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.096415 B = 2806.841136 C = 3198.834626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.099 0.901 4 C 0.093 3.907 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.578 6.578 8 C -0.543 4.543 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.768 5.768 12 Si 0.906 3.094 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.264 1.264 16 C 0.094 3.906 17 C 0.069 3.931 18 H 0.062 0.938 19 C -0.140 4.140 20 O -0.383 6.383 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.100 0.900 26 H 0.269 0.731 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.220 7.116 6.948 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.117 0.883 4 C -0.031 4.031 5 N -0.382 5.382 6 C 0.367 3.633 7 O -0.460 6.460 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.030 4.030 17 C 0.011 3.989 18 H 0.079 0.921 19 C -0.197 4.197 20 O -0.303 6.303 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.116 6.343 7.030 9.702 hybrid contribution -0.409 0.454 -0.964 1.141 sum 1.707 6.797 6.066 9.269 Atomic orbital electron populations 1.22290 0.96117 1.03350 1.01617 1.22596 0.94080 0.95770 0.86089 0.88289 1.22104 0.98905 0.83768 0.98357 1.48243 1.64481 1.09040 1.16394 1.18265 0.76374 0.86690 0.81946 1.90590 1.59680 1.15218 1.80526 1.20927 1.34404 0.98414 1.04242 0.90958 1.25725 0.94451 0.94496 0.98536 1.69999 1.27012 1.10345 1.32352 0.86390 0.78413 0.80418 0.81679 1.19673 1.20429 1.18857 1.21818 0.98830 0.97436 0.84948 1.22491 0.98329 0.82805 0.95296 0.92058 1.21701 1.01851 1.00379 0.95791 1.87874 1.72755 1.25727 1.43912 0.93000 0.91380 0.91438 0.93343 0.88150 0.92031 0.93414 0.89314 0.92244 0.91146 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.81 37.16 0.33 -2.58 16 2 C 0.07 1.21 3.93 -26.57 -0.10 1.11 16 3 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 4 C 0.09 1.79 5.93 -3.53 -0.02 1.77 16 5 N -0.64 -14.94 2.54 -173.93 -0.44 -15.39 16 6 C 0.56 16.00 7.62 -12.99 -0.10 15.90 16 7 O -0.58 -18.73 14.56 5.20 0.08 -18.66 16 8 C -0.54 -15.05 8.86 -35.63 -0.32 -15.37 16 9 H 0.07 1.82 5.73 -52.49 -0.30 1.52 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.32 16 11 N -0.77 -22.85 11.86 55.55 0.66 -22.19 16 12 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 13 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 14 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 15 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 16 C 0.09 1.93 5.91 -3.53 -0.02 1.91 16 17 C 0.07 1.20 3.01 -26.58 -0.08 1.12 16 18 H 0.06 1.11 6.26 -51.93 -0.32 0.79 16 19 C -0.14 -1.90 9.57 37.16 0.36 -1.55 16 20 O -0.38 -6.71 10.22 -35.23 -0.36 -7.07 16 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.07 1.31 6.11 -51.93 -0.32 0.99 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.10 1.96 5.40 -51.93 -0.28 1.68 16 26 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.98 7.12 -51.93 -0.37 1.61 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 253.23 15.07 3.82 3.82 Total: -1.00 -33.26 253.23 -5.44 -38.70 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.11 Total: 1.35 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.05 Total: 4.63 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.22 Total: -37.57 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.28 Total: -25.73 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.26 -5.44 -38.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000090914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.056 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds