Wall clock time and date at job start Sun Mar 29 2020 21:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.55616 * 2 1 4 4 C 1.53300 * 109.50961 * 239.87604 * 2 1 3 5 5 N 1.47149 * 108.38389 * 292.38241 * 4 2 1 6 6 C 1.34780 * 120.98543 * 129.48994 * 5 4 2 7 7 O 1.21686 * 120.00052 * 175.29552 * 6 5 4 8 8 C 1.46376 * 119.99648 * 355.28985 * 6 5 4 9 9 H 1.07997 * 119.99684 * 7.64602 * 8 6 5 10 10 C 1.40050 * 119.99643 * 187.64349 * 8 6 5 11 11 N 1.30666 * 120.00373 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99603 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47337 * 90.00299 * 12 10 8 14 14 H 1.48509 * 109.46854 * 210.00249 * 12 10 8 15 15 H 1.48502 * 109.47135 * 330.00037 * 12 10 8 16 16 C 1.47162 * 118.03627 * 309.46154 * 5 4 2 17 17 C 1.53297 * 108.38182 * 50.53949 * 16 5 4 18 18 H 1.08997 * 109.55167 * 67.64594 * 17 16 5 19 19 C 1.52996 * 109.51093 * 187.77897 * 17 16 5 20 20 O 1.42958 * 109.51020 * 120.13329 * 2 1 3 21 21 H 1.09000 * 109.46695 * 299.87422 * 1 2 3 22 22 H 1.09001 * 109.47074 * 59.86361 * 1 2 3 23 23 H 1.08994 * 109.47405 * 179.87392 * 1 2 3 24 24 H 1.09001 * 109.68108 * 172.65890 * 4 2 1 25 25 H 1.08998 * 109.68263 * 52.09941 * 4 2 1 26 26 H 0.96992 * 120.00330 * 179.97438 * 11 10 8 27 27 H 1.08996 * 109.68002 * 290.81797 * 16 5 4 28 28 H 1.08999 * 109.68018 * 170.26300 * 16 5 4 29 29 H 1.09000 * 109.47277 * 179.74719 * 19 17 16 30 30 H 1.09007 * 109.46604 * 299.73935 * 19 17 16 31 31 H 1.08996 * 109.47568 * 59.74089 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7252 -1.2498 5 7 1.6958 -2.1507 -1.1338 6 6 1.0714 -2.7971 -2.1382 7 8 0.8701 -3.9945 -2.0588 8 6 0.6354 -2.0586 -3.3244 9 1 0.9209 -1.0249 -3.4520 10 6 -0.1520 -2.6926 -4.2937 11 7 -0.4977 -3.9431 -4.1390 12 14 -0.7078 -1.7503 -5.8078 13 1 0.3024 -1.9044 -6.8853 14 1 -2.0128 -2.2856 -6.2726 15 1 -0.8551 -0.3119 -5.4694 16 6 2.0520 -2.8499 0.1112 17 6 1.5395 -2.0212 1.2947 18 1 0.4496 -2.0284 1.3002 19 6 2.0614 -2.6204 2.6021 20 8 2.0075 -0.6765 1.1654 21 1 -0.3633 0.5119 0.8911 22 1 -0.3633 0.5160 -0.8888 23 1 -0.3634 -1.0276 -0.0023 24 1 3.1241 -0.6148 -1.3209 25 1 1.5704 -0.3041 -2.1377 26 1 -1.0433 -4.3821 -4.8101 27 1 3.1350 -2.9533 0.1771 28 1 1.5870 -3.8356 0.1245 29 1 1.7003 -2.0281 3.4429 30 1 1.7041 -3.6456 2.6999 31 1 3.1513 -2.6145 2.5950 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000090914.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:34 Heat of formation + Delta-G solvation = -106.515716 kcal Electronic energy + Delta-G solvation = -15051.182405 eV Core-core repulsion = 12524.698854 eV Total energy + Delta-G solvation = -2526.483550 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.98806 -38.68045 -35.21355 -34.78020 -34.20386 -31.02637 -29.10605 -27.63086 -26.26417 -23.62328 -21.87610 -20.45798 -18.64535 -17.86180 -17.37039 -16.47334 -16.39193 -16.08549 -15.58559 -15.21139 -14.39737 -14.13020 -13.80026 -13.35982 -13.22492 -13.13864 -12.99462 -12.79668 -12.70685 -12.41873 -12.09743 -12.02007 -11.96884 -11.32150 -10.97304 -10.85000 -9.82454 -9.05130 -8.31900 -6.86191 1.39167 1.40521 1.55648 2.21118 2.43366 2.62693 2.88117 3.55261 3.82233 3.97757 4.09389 4.18287 4.24521 4.43131 4.48388 4.63425 4.74378 4.78380 4.94307 4.96110 5.00417 5.07514 5.24122 5.34859 5.36116 5.68927 6.07920 6.25635 6.31986 6.85459 7.36302 8.42287 8.64381 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043801 B = 0.009973 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.096415 B = 2806.841136 C = 3198.834626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.141 0.859 4 C 0.087 3.913 5 N -0.646 5.646 6 C 0.543 3.457 7 O -0.634 6.634 8 C -0.565 4.565 9 H 0.095 0.905 10 C 0.028 3.972 11 N -0.824 5.824 12 Si 0.995 3.005 13 H -0.263 1.263 14 H -0.274 1.274 15 H -0.244 1.244 16 C 0.090 3.910 17 C 0.077 3.923 18 H 0.049 0.951 19 C -0.133 4.133 20 O -0.381 6.381 21 H 0.075 0.925 22 H 0.073 0.927 23 H 0.030 0.970 24 H 0.062 0.938 25 H 0.097 0.903 26 H 0.274 0.726 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.525 9.774 7.108 12.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 H 0.158 0.842 4 C -0.036 4.036 5 N -0.383 5.383 6 C 0.349 3.651 7 O -0.521 6.521 8 C -0.601 4.601 9 H 0.113 0.887 10 C -0.187 4.187 11 N -0.453 5.453 12 Si 0.814 3.186 13 H -0.188 1.188 14 H -0.199 1.199 15 H -0.167 1.167 16 C -0.033 4.033 17 C 0.019 3.981 18 H 0.067 0.933 19 C -0.190 4.190 20 O -0.300 6.300 21 H 0.094 0.906 22 H 0.092 0.908 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.455 9.055 7.238 11.850 hybrid contribution -0.449 -0.376 -0.958 1.123 sum 2.006 8.679 6.280 10.899 Atomic orbital electron populations 1.22248 0.96192 1.01326 1.03103 1.22748 0.94019 0.97079 0.84342 0.84199 1.22363 0.99829 0.81471 0.99970 1.48109 1.63281 1.10815 1.16132 1.18704 0.76638 0.86332 0.83408 1.90535 1.62062 1.17526 1.81979 1.21437 1.34637 0.99530 1.04481 0.88690 1.27008 0.93909 0.95368 1.02382 1.70180 1.28139 1.12872 1.34158 0.85052 0.77871 0.79420 0.76210 1.18796 1.19928 1.16653 1.21975 0.99206 0.96780 0.85383 1.22435 0.97681 0.82566 0.95458 0.93282 1.21695 1.02344 1.00916 0.94081 1.87892 1.72758 1.25375 1.44006 0.90635 0.90792 0.95132 0.91950 0.88534 0.91596 0.92406 0.92189 0.90313 0.90301 0.91189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 8.81 71.98 0.63 -4.70 16 2 C 0.08 2.31 3.93 30.70 0.12 2.43 16 3 H 0.14 3.20 8.14 -2.39 -0.02 3.18 16 4 C 0.09 3.22 5.93 86.36 0.51 3.73 16 5 N -0.65 -30.47 2.54 -822.41 -2.08 -32.55 16 6 C 0.54 32.00 7.62 86.36 0.66 32.66 16 7 O -0.63 -43.31 14.56 -4.30 -0.06 -43.37 16 8 C -0.56 -31.62 8.86 24.83 0.22 -31.40 16 9 H 0.10 4.70 5.73 -2.91 -0.02 4.68 16 10 C 0.03 1.57 5.50 85.31 0.47 2.04 16 11 N -0.82 -50.58 11.86 21.84 0.26 -50.32 16 12 Si 1.00 40.36 29.56 68.60 2.03 42.39 16 13 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 16 C 0.09 3.77 5.91 86.35 0.51 4.28 16 17 C 0.08 2.60 3.01 30.69 0.09 2.69 16 18 H 0.05 1.78 6.26 -2.39 -0.01 1.77 16 19 C -0.13 -3.35 9.57 71.98 0.69 -2.66 16 20 O -0.38 -12.32 10.22 -148.98 -1.52 -13.85 16 21 H 0.07 1.97 8.14 -2.39 -0.02 1.96 16 22 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 23 H 0.03 1.17 6.11 -2.39 -0.01 1.15 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.10 3.62 5.40 -2.39 -0.01 3.60 16 26 H 0.27 15.25 8.29 -92.71 -0.77 14.48 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 2.82 7.12 -2.39 -0.02 2.81 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -74.90 253.23 3.64 -71.26 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 1.12 Total: 17.37 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 3.91 Total: 9.07 kcal Atomic # 7 Polarization: -81.04 SS G_CDS: -1.83 Total: -82.87 kcal Atomic # 8 Polarization: -55.63 SS G_CDS: -1.59 Total: -57.22 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -74.90 3.64 -71.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000090914.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.255 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds