Wall clock time and date at job start Sun Mar 29 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.56216 * 2 1 4 4 C 1.53301 * 109.50797 * 120.12721 * 2 1 3 5 5 N 1.47154 * 108.38741 * 67.61970 * 4 2 1 6 6 C 1.34772 * 120.98466 * 230.51018 * 5 4 2 7 7 O 1.21688 * 119.99993 * 184.65353 * 6 5 4 8 8 C 1.46375 * 119.99797 * 4.65699 * 6 5 4 9 9 H 1.08002 * 120.00157 * 352.46290 * 8 6 5 10 10 C 1.40055 * 119.99958 * 172.45938 * 8 6 5 11 11 N 1.30667 * 119.99841 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99872 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.47188 * 299.99804 * 12 10 8 15 15 H 1.48494 * 109.47418 * 60.00059 * 12 10 8 16 16 C 1.47153 * 118.03097 * 50.78577 * 5 4 2 17 17 C 1.53704 * 108.16368 * 309.15825 * 16 5 4 18 18 H 1.09001 * 109.69849 * 292.54493 * 17 16 5 19 19 C 1.53002 * 109.44496 * 172.37749 * 17 16 5 20 20 O 1.42962 * 109.51371 * 239.86952 * 2 1 3 21 21 H 1.08998 * 109.47262 * 299.87703 * 1 2 3 22 22 H 1.09001 * 109.46634 * 59.87536 * 1 2 3 23 23 H 1.09003 * 109.47282 * 179.87107 * 1 2 3 24 24 H 1.09000 * 109.68297 * 307.89848 * 4 2 1 25 25 H 1.08999 * 109.70940 * 187.36175 * 4 2 1 26 26 H 0.97000 * 119.99808 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.68143 * 68.94308 * 16 5 4 28 28 H 1.08997 * 109.67882 * 189.48793 * 16 5 4 29 29 H 1.09004 * 109.47221 * 300.38679 * 19 17 16 30 30 H 1.09001 * 109.47483 * 60.38418 * 19 17 16 31 31 H 1.08997 * 109.47653 * 180.38812 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0270 0.0000 4 6 2.0419 -0.7253 1.2498 5 7 1.6958 -2.1508 1.1337 6 6 1.0714 -2.7972 2.1380 7 8 0.8693 -3.9945 2.0583 8 6 0.6363 -2.0590 3.3248 9 1 0.9211 -1.0250 3.4520 10 6 -0.1492 -2.6935 4.2952 11 7 -0.4933 -3.9446 4.1415 12 14 -0.7050 -1.7511 5.8093 13 1 -1.5181 -2.6419 6.6759 14 1 0.4843 -1.2792 6.5629 15 1 -1.5227 -0.5835 5.3932 16 6 2.0570 -2.8512 -0.1090 17 6 1.5396 -2.0211 -1.2946 18 1 0.4496 -2.0284 -1.3003 19 6 2.0614 -2.6203 -2.6022 20 8 2.0075 -0.6764 -1.1654 21 1 -0.3634 0.5119 0.8911 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3634 -1.0277 -0.0023 24 1 1.5703 -0.3042 2.1377 25 1 3.1239 -0.6149 1.3216 26 1 -1.0371 -4.3842 4.8138 27 1 3.1406 -2.9512 -0.1723 28 1 1.5955 -3.8385 -0.1214 29 1 3.1514 -2.6144 -2.5951 30 1 1.7043 -3.6455 -2.7001 31 1 1.7004 -2.0280 -3.4429 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000090916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:37 Heat of formation + Delta-G solvation = -82.721591 kcal Electronic energy + Delta-G solvation = -15048.724353 eV Core-core repulsion = 12523.272594 eV Total energy + Delta-G solvation = -2525.451760 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40227 -36.71165 -33.40376 -33.07220 -32.35476 -29.61293 -27.24516 -26.01240 -24.50384 -22.21700 -20.06186 -18.82043 -16.82050 -16.02663 -15.67708 -14.90134 -14.73431 -14.33278 -14.08144 -13.51990 -12.61200 -12.53149 -12.25785 -11.93504 -11.72806 -11.40641 -11.38266 -11.35043 -10.95301 -10.93838 -10.64659 -10.29209 -10.10803 -9.82742 -9.34689 -8.88142 -7.63477 -7.19197 -6.24247 -4.68821 3.12174 3.17554 3.18927 4.01671 4.11742 4.49565 4.51643 5.23011 5.33257 5.46978 5.53047 5.57591 5.69209 5.79030 5.84073 6.00708 6.15634 6.21247 6.27223 6.34075 6.42177 6.46289 6.57180 6.72209 7.40669 7.51871 7.65229 8.07429 8.29957 8.97716 9.38061 10.52934 10.71235 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043794 B = 0.009972 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.198189 B = 2807.272200 C = 3199.457920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 H 0.099 0.901 4 C 0.093 3.907 5 N -0.643 5.643 6 C 0.561 3.439 7 O -0.578 6.578 8 C -0.544 4.544 9 H 0.072 0.928 10 C 0.088 3.912 11 N -0.769 5.769 12 Si 0.907 3.093 13 H -0.280 1.280 14 H -0.267 1.267 15 H -0.268 1.268 16 C 0.094 3.906 17 C 0.069 3.931 18 H 0.062 0.938 19 C -0.140 4.140 20 O -0.383 6.383 21 H 0.067 0.933 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.100 0.900 25 H 0.048 0.952 26 H 0.269 0.731 27 H 0.048 0.952 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.219 7.105 -6.941 10.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.015 3.985 3 H 0.117 0.883 4 C -0.031 4.031 5 N -0.382 5.382 6 C 0.367 3.633 7 O -0.460 6.460 8 C -0.580 4.580 9 H 0.090 0.910 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.731 3.269 13 H -0.205 1.205 14 H -0.192 1.192 15 H -0.192 1.192 16 C -0.030 4.030 17 C 0.011 3.989 18 H 0.080 0.920 19 C -0.197 4.197 20 O -0.303 6.303 21 H 0.086 0.914 22 H 0.070 0.930 23 H 0.086 0.914 24 H 0.118 0.882 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.107 0.893 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.114 6.328 -7.021 9.685 hybrid contribution -0.408 0.467 0.961 1.144 sum 1.706 6.795 -6.060 9.263 Atomic orbital electron populations 1.22290 0.96116 1.03343 1.01623 1.22594 0.94076 0.95764 0.86086 0.88293 1.22103 0.98904 0.83775 0.98347 1.48243 1.64380 1.08993 1.16556 1.18252 0.76396 0.86685 0.81927 1.90590 1.59700 1.15225 1.80516 1.20894 1.34558 0.98371 1.04204 0.91009 1.25724 0.94443 0.94494 0.98536 1.69993 1.26978 1.10282 1.32451 0.86450 0.79203 0.79962 0.81279 1.20508 1.19212 1.19238 1.21900 0.98756 0.97421 0.84939 1.22572 0.98306 0.82780 0.95272 0.92021 1.21703 1.01852 1.00380 0.95804 1.87873 1.72754 1.25733 1.43908 0.91379 0.93004 0.91438 0.88163 0.93350 0.91975 0.93386 0.89308 0.92051 0.91148 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.91 8.81 37.16 0.33 -2.58 16 2 C 0.07 1.21 3.93 -26.58 -0.10 1.11 16 3 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 4 C 0.09 1.79 5.93 -3.53 -0.02 1.77 16 5 N -0.64 -14.95 2.53 -173.68 -0.44 -15.39 16 6 C 0.56 16.00 7.62 -12.99 -0.10 15.90 16 7 O -0.58 -18.74 14.55 5.20 0.08 -18.66 16 8 C -0.54 -15.07 8.86 -35.63 -0.32 -15.38 16 9 H 0.07 1.80 5.73 -52.49 -0.30 1.50 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -22.85 11.86 55.55 0.66 -22.19 16 12 Si 0.91 19.83 29.56 -169.99 -5.02 14.81 16 13 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 16 C 0.09 1.93 5.94 -3.32 -0.02 1.91 16 17 C 0.07 1.20 3.03 -26.36 -0.08 1.12 16 18 H 0.06 1.12 6.25 -51.93 -0.32 0.80 16 19 C -0.14 -1.90 9.57 37.16 0.36 -1.55 16 20 O -0.38 -6.71 10.22 -35.23 -0.36 -7.07 16 21 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 22 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.07 1.31 6.11 -51.93 -0.32 0.99 16 24 H 0.10 1.95 5.40 -51.93 -0.28 1.67 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.27 7.29 8.29 -40.82 -0.34 6.95 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.98 7.11 -51.93 -0.37 1.61 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 253.25 15.07 3.82 3.82 Total: -1.00 -33.24 253.25 -5.43 -38.68 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.11 Total: 1.38 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -0.05 Total: 4.63 kcal Atomic # 7 Polarization: -37.80 SS G_CDS: 0.22 Total: -37.58 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.28 Total: -25.73 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -33.24 -5.43 -38.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000090916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.046 kcal (2) G-P(sol) polarization free energy of solvation -33.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds