Wall clock time and date at job start Sun Mar 29 2020 21:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.56216 * 2 1 4 4 C 1.53301 * 109.50797 * 120.12721 * 2 1 3 5 5 N 1.47154 * 108.38741 * 67.61970 * 4 2 1 6 6 C 1.34772 * 120.98466 * 230.51018 * 5 4 2 7 7 O 1.21688 * 119.99993 * 184.65353 * 6 5 4 8 8 C 1.46375 * 119.99797 * 4.65699 * 6 5 4 9 9 H 1.08002 * 120.00157 * 352.46290 * 8 6 5 10 10 C 1.40055 * 119.99958 * 172.45938 * 8 6 5 11 11 N 1.30667 * 119.99841 * 0.02562 * 10 8 6 12 12 Si 1.86801 * 119.99872 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46845 * 180.02562 * 12 10 8 14 14 H 1.48499 * 109.47188 * 299.99804 * 12 10 8 15 15 H 1.48494 * 109.47418 * 60.00059 * 12 10 8 16 16 C 1.47153 * 118.03097 * 50.78577 * 5 4 2 17 17 C 1.53704 * 108.16368 * 309.15825 * 16 5 4 18 18 H 1.09001 * 109.69849 * 292.54493 * 17 16 5 19 19 C 1.53002 * 109.44496 * 172.37749 * 17 16 5 20 20 O 1.42962 * 109.51371 * 239.86952 * 2 1 3 21 21 H 1.08998 * 109.47262 * 299.87703 * 1 2 3 22 22 H 1.09001 * 109.46634 * 59.87536 * 1 2 3 23 23 H 1.09003 * 109.47282 * 179.87107 * 1 2 3 24 24 H 1.09000 * 109.68297 * 307.89848 * 4 2 1 25 25 H 1.08999 * 109.70940 * 187.36175 * 4 2 1 26 26 H 0.97000 * 119.99808 * 179.97438 * 11 10 8 27 27 H 1.09003 * 109.68143 * 68.94308 * 16 5 4 28 28 H 1.08997 * 109.67882 * 189.48793 * 16 5 4 29 29 H 1.09004 * 109.47221 * 300.38679 * 19 17 16 30 30 H 1.09001 * 109.47483 * 60.38418 * 19 17 16 31 31 H 1.08997 * 109.47653 * 180.38812 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0270 0.0000 4 6 2.0419 -0.7253 1.2498 5 7 1.6958 -2.1508 1.1337 6 6 1.0714 -2.7972 2.1380 7 8 0.8693 -3.9945 2.0583 8 6 0.6363 -2.0590 3.3248 9 1 0.9211 -1.0250 3.4520 10 6 -0.1492 -2.6935 4.2952 11 7 -0.4933 -3.9446 4.1415 12 14 -0.7050 -1.7511 5.8093 13 1 -1.5181 -2.6419 6.6759 14 1 0.4843 -1.2792 6.5629 15 1 -1.5227 -0.5835 5.3932 16 6 2.0570 -2.8512 -0.1090 17 6 1.5396 -2.0211 -1.2946 18 1 0.4496 -2.0284 -1.3003 19 6 2.0614 -2.6203 -2.6022 20 8 2.0075 -0.6764 -1.1654 21 1 -0.3634 0.5119 0.8911 22 1 -0.3633 0.5158 -0.8889 23 1 -0.3634 -1.0277 -0.0023 24 1 1.5703 -0.3042 2.1377 25 1 3.1239 -0.6149 1.3216 26 1 -1.0371 -4.3842 4.8138 27 1 3.1406 -2.9512 -0.1723 28 1 1.5955 -3.8385 -0.1214 29 1 3.1514 -2.6144 -2.5951 30 1 1.7043 -3.6455 -2.7001 31 1 1.7004 -2.0280 -3.4429 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000090916.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:37 Heat of formation + Delta-G solvation = -106.465397 kcal Electronic energy + Delta-G solvation = -15049.753962 eV Core-core repulsion = 12523.272594 eV Total energy + Delta-G solvation = -2526.481368 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97664 -38.67794 -35.21331 -34.77395 -34.18866 -31.02305 -29.10412 -27.62769 -26.25523 -23.62391 -21.86941 -20.46309 -18.64328 -17.85596 -17.36269 -16.47423 -16.38590 -16.08631 -15.59025 -15.20758 -14.38975 -14.12938 -13.79954 -13.36178 -13.22925 -13.13128 -12.99268 -12.78661 -12.68021 -12.43406 -12.09539 -12.04463 -11.98125 -11.32097 -10.95641 -10.84631 -9.82666 -9.04894 -8.31621 -6.86131 1.39050 1.42374 1.53982 2.21269 2.43503 2.63029 2.88280 3.55340 3.81827 3.97687 4.08918 4.18376 4.24654 4.43225 4.48479 4.63419 4.74436 4.78495 4.94330 4.96090 5.00393 5.07510 5.24188 5.34853 5.36016 5.68992 6.07737 6.25719 6.32077 6.85436 7.36433 8.42427 8.64428 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.043794 B = 0.009972 C = 0.008749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.198189 B = 2807.272200 C = 3199.457920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.141 0.859 4 C 0.087 3.913 5 N -0.646 5.646 6 C 0.543 3.457 7 O -0.634 6.634 8 C -0.565 4.565 9 H 0.095 0.905 10 C 0.028 3.972 11 N -0.824 5.824 12 Si 0.995 3.005 13 H -0.276 1.276 14 H -0.254 1.254 15 H -0.250 1.250 16 C 0.090 3.910 17 C 0.077 3.923 18 H 0.050 0.950 19 C -0.133 4.133 20 O -0.381 6.381 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.030 0.970 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.274 0.726 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.520 9.757 -7.092 12.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.018 3.982 3 H 0.158 0.842 4 C -0.036 4.036 5 N -0.383 5.383 6 C 0.349 3.651 7 O -0.521 6.521 8 C -0.602 4.602 9 H 0.113 0.887 10 C -0.187 4.187 11 N -0.453 5.453 12 Si 0.814 3.186 13 H -0.201 1.201 14 H -0.178 1.178 15 H -0.174 1.174 16 C -0.033 4.033 17 C 0.019 3.981 18 H 0.068 0.932 19 C -0.191 4.191 20 O -0.300 6.300 21 H 0.092 0.908 22 H 0.094 0.906 23 H 0.049 0.951 24 H 0.115 0.885 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.450 9.034 -7.220 11.821 hybrid contribution -0.447 -0.359 0.951 1.110 sum 2.003 8.675 -6.269 10.889 Atomic orbital electron populations 1.22248 0.96197 1.01324 1.03102 1.22746 0.94010 0.97075 0.84336 0.84197 1.22365 0.99826 0.81476 0.99972 1.48110 1.63187 1.10769 1.16282 1.18693 0.76666 0.86328 0.83388 1.90536 1.62078 1.17533 1.81969 1.21411 1.34794 0.99510 1.04445 0.88704 1.27009 0.93890 0.95362 1.02391 1.70179 1.28118 1.12811 1.34220 0.85106 0.79107 0.78442 0.75916 1.20114 1.17827 1.17390 1.22058 0.99141 0.96757 0.85386 1.22513 0.97653 0.82541 0.95430 0.93245 1.21697 1.02346 1.00915 0.94095 1.87892 1.72756 1.25378 1.44004 0.90804 0.90633 0.95129 0.88527 0.91966 0.91591 0.92373 0.92185 0.91194 0.90305 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.33 8.81 71.98 0.63 -4.70 16 2 C 0.08 2.32 3.93 30.69 0.12 2.44 16 3 H 0.14 3.19 8.14 -2.39 -0.02 3.18 16 4 C 0.09 3.21 5.93 86.36 0.51 3.72 16 5 N -0.65 -30.47 2.53 -821.62 -2.08 -32.55 16 6 C 0.54 32.01 7.62 86.36 0.66 32.67 16 7 O -0.63 -43.32 14.55 -4.31 -0.06 -43.38 16 8 C -0.57 -31.67 8.86 24.83 0.22 -31.45 16 9 H 0.10 4.68 5.73 -2.91 -0.02 4.67 16 10 C 0.03 1.58 5.50 85.31 0.47 2.05 16 11 N -0.82 -50.58 11.86 21.84 0.26 -50.32 16 12 Si 1.00 40.35 29.56 68.60 2.03 42.38 16 13 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 14 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 15 H -0.25 -9.38 7.11 99.48 0.71 -8.67 16 16 C 0.09 3.77 5.94 86.49 0.51 4.29 16 17 C 0.08 2.60 3.03 30.83 0.09 2.69 16 18 H 0.05 1.80 6.25 -2.39 -0.01 1.78 16 19 C -0.13 -3.35 9.57 71.98 0.69 -2.66 16 20 O -0.38 -12.32 10.22 -148.98 -1.52 -13.84 16 21 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.03 1.17 6.11 -2.39 -0.01 1.15 16 24 H 0.10 3.61 5.40 -2.39 -0.01 3.60 16 25 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.27 15.30 8.29 -92.71 -0.77 14.53 16 27 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.83 7.11 -2.39 -0.02 2.81 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -74.87 253.25 3.65 -71.22 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: 1.12 Total: 17.46 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 3.91 Total: 9.04 kcal Atomic # 7 Polarization: -81.05 SS G_CDS: -1.82 Total: -82.88 kcal Atomic # 8 Polarization: -55.64 SS G_CDS: -1.59 Total: -57.22 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -74.87 3.65 -71.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000090916.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.241 kcal (2) G-P(sol) polarization free energy of solvation -74.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds