Wall clock time and date at job start Sun Mar 29 2020 21:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51210 * 2 1 4 4 C 1.53289 * 109.55544 * 239.86926 * 2 1 3 5 5 N 1.47162 * 108.41801 * 187.77214 * 4 2 1 6 6 C 1.34776 * 120.99339 * 230.53565 * 5 4 2 7 7 O 1.21687 * 119.99709 * 174.70188 * 6 5 4 8 8 C 1.46375 * 120.00188 * 354.70341 * 6 5 4 9 9 H 1.08007 * 119.99391 * 5.00075 * 8 6 5 10 10 C 1.40041 * 120.00157 * 185.00268 * 8 6 5 11 11 N 1.30673 * 120.00231 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99782 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47470 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47302 * 120.00042 * 12 10 8 15 15 H 1.48503 * 109.47230 * 239.99716 * 12 10 8 16 16 C 1.47150 * 118.02463 * 50.46684 * 5 4 2 17 17 C 1.53295 * 108.41805 * 309.53341 * 16 5 4 18 18 H 1.08993 * 109.51270 * 292.35998 * 17 16 5 19 19 C 1.53001 * 109.51232 * 172.25677 * 17 16 5 20 20 O 1.42959 * 109.22249 * 52.28210 * 17 16 5 21 21 H 1.09004 * 109.47329 * 299.90319 * 1 2 3 22 22 H 1.09006 * 109.46905 * 59.89993 * 1 2 3 23 23 H 1.08998 * 109.47593 * 179.90078 * 1 2 3 24 24 H 1.09004 * 109.68199 * 307.47681 * 4 2 1 25 25 H 1.09000 * 109.68217 * 67.98685 * 4 2 1 26 26 H 0.96995 * 120.00054 * 179.97438 * 11 10 8 27 27 H 1.09006 * 109.68354 * 189.79056 * 16 5 4 28 28 H 1.09005 * 109.68665 * 69.27749 * 16 5 4 29 29 H 1.08996 * 109.47333 * 60.00742 * 19 17 16 30 30 H 1.09006 * 109.46771 * 180.02562 * 19 17 16 31 31 H 1.08992 * 109.47124 * 299.99960 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7251 -1.2493 5 7 3.5023 -0.8759 -1.1330 6 6 4.3207 -0.5034 -2.1369 7 8 5.5274 -0.5457 -1.9856 8 6 3.7581 -0.0482 -3.4092 9 1 2.6896 0.0664 -3.5169 10 6 4.6053 0.2388 -4.4868 11 7 5.8981 0.1005 -4.3563 12 14 3.8872 0.8191 -6.1106 13 1 2.4082 0.8922 -5.9999 14 1 4.4265 2.1633 -6.4382 15 1 4.2560 -0.1374 -7.1850 16 6 4.0415 -1.4440 0.1128 17 6 3.4311 -0.6839 1.2958 18 1 3.8021 0.3410 1.3004 19 6 3.8220 -1.3749 2.6037 20 8 2.0075 -0.6758 1.1658 21 1 -0.3634 0.5123 0.8909 22 1 -0.3633 0.5154 -0.8891 23 1 -0.3634 -1.0276 -0.0018 24 1 1.5775 -1.7081 -1.3204 25 1 1.8034 -0.1404 -2.1375 26 1 6.4849 0.2989 -5.1028 27 1 5.1261 -1.3351 0.1267 28 1 3.7779 -2.4996 0.1793 29 1 4.9078 -1.3838 2.6995 30 1 3.3873 -0.8341 3.4443 31 1 3.4492 -2.3990 2.5990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000012339236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:40 Heat of formation + Delta-G solvation = -86.283961 kcal Electronic energy + Delta-G solvation = -14817.688211 eV Core-core repulsion = 12292.081975 eV Total energy + Delta-G solvation = -2525.606236 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.22016 -36.71489 -33.51423 -33.31397 -32.40610 -29.81313 -27.25116 -25.75437 -24.54145 -21.57655 -20.66356 -19.15941 -16.65769 -16.18627 -15.88817 -14.87268 -14.76860 -14.16743 -13.91548 -13.47046 -12.82371 -12.49832 -12.31414 -11.93606 -11.79862 -11.59654 -11.48015 -11.33426 -11.01044 -10.95871 -10.59030 -10.27591 -10.15997 -9.98243 -9.37426 -8.89157 -7.64232 -7.21406 -6.24543 -4.69773 3.09694 3.17881 3.21980 3.96717 4.06108 4.45174 4.52457 5.15305 5.35872 5.39301 5.53298 5.54830 5.67073 5.77214 5.79193 5.96105 5.98174 6.18464 6.21471 6.23898 6.33287 6.42519 6.48637 6.64143 7.40435 7.50162 7.64681 8.06868 8.29456 8.97274 9.36970 10.52044 10.70519 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.009661 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.418421 B = 2897.466676 C = 3520.465315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.071 3.929 3 H 0.057 0.943 4 C 0.097 3.903 5 N -0.647 5.647 6 C 0.559 3.441 7 O -0.577 6.577 8 C -0.544 4.544 9 H 0.073 0.927 10 C 0.087 3.913 11 N -0.767 5.767 12 Si 0.908 3.092 13 H -0.263 1.263 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.093 3.907 17 C 0.074 3.926 18 H 0.056 0.944 19 C -0.139 4.139 20 O -0.385 6.385 21 H 0.058 0.942 22 H 0.071 0.929 23 H 0.061 0.939 24 H 0.050 0.950 25 H 0.098 0.902 26 H 0.269 0.731 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.388 -0.332 6.936 10.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.012 3.988 3 H 0.075 0.925 4 C -0.028 4.028 5 N -0.385 5.385 6 C 0.365 3.635 7 O -0.460 6.460 8 C -0.580 4.580 9 H 0.091 0.909 10 C -0.133 4.133 11 N -0.396 5.396 12 Si 0.732 3.268 13 H -0.187 1.187 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.032 4.032 17 C 0.016 3.984 18 H 0.074 0.926 19 C -0.197 4.197 20 O -0.305 6.305 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.109 0.891 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.624 -0.431 7.041 10.387 hybrid contribution -0.241 0.373 -0.991 1.086 sum -7.865 -0.059 6.050 9.923 Atomic orbital electron populations 1.21699 0.93239 1.02629 1.02119 1.22530 0.94484 0.95619 0.86147 0.92478 1.22094 0.82892 0.99797 0.98018 1.48302 1.05311 1.68497 1.16424 1.18296 0.85356 0.77044 0.82763 1.90587 1.14645 1.59037 1.81689 1.20991 0.94039 1.47766 0.95219 0.90885 1.25742 0.94416 0.93301 0.99843 1.70022 1.03420 1.35240 1.30895 0.86313 0.80024 0.78735 0.81705 1.18695 1.20095 1.20097 1.21833 1.00462 0.95992 0.84867 1.22468 0.81366 0.99154 0.95452 0.92596 1.21696 1.01313 1.00983 0.95665 1.87815 1.21164 1.77848 1.43686 0.92249 0.90977 0.91966 0.93194 0.88357 0.92068 0.89150 0.93279 0.91058 0.92224 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.57 37.16 0.36 -1.45 16 2 C 0.07 1.20 3.40 -26.58 -0.09 1.11 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.10 1.90 5.79 -3.53 -0.02 1.87 16 5 N -0.65 -15.39 3.02 -173.93 -0.53 -15.91 16 6 C 0.56 16.21 7.63 -12.99 -0.10 16.11 16 7 O -0.58 -18.88 14.51 5.20 0.08 -18.80 16 8 C -0.54 -15.29 8.86 -35.63 -0.32 -15.61 16 9 H 0.07 1.87 5.76 -52.48 -0.30 1.56 16 10 C 0.09 2.41 5.50 -17.37 -0.10 2.32 16 11 N -0.77 -22.96 11.84 55.55 0.66 -22.31 16 12 Si 0.91 19.94 29.56 -169.99 -5.02 14.92 16 13 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 16 C 0.09 1.93 5.94 -3.53 -0.02 1.91 16 17 C 0.07 1.30 3.40 -26.58 -0.09 1.21 16 18 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 19 C -0.14 -1.89 9.57 37.16 0.36 -1.54 16 20 O -0.39 -6.83 10.03 -35.23 -0.35 -7.19 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.10 1.95 5.51 -51.93 -0.29 1.66 16 26 H 0.27 7.25 8.29 -40.82 -0.34 6.92 16 27 H 0.09 2.03 7.06 -51.93 -0.37 1.66 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 257.97 15.07 3.89 3.89 Total: -1.00 -33.82 257.97 -5.62 -39.44 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -4.32 Total: 0.04 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -0.02 Total: 5.93 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.13 Total: -38.22 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.28 Total: -25.99 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.82 -5.62 -39.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012339236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.848 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds