Wall clock time and date at job start Sun Mar 29 2020 21:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.51210 * 2 1 4 4 C 1.53289 * 109.55544 * 239.86926 * 2 1 3 5 5 N 1.47162 * 108.41801 * 187.77214 * 4 2 1 6 6 C 1.34776 * 120.99339 * 230.53565 * 5 4 2 7 7 O 1.21687 * 119.99709 * 174.70188 * 6 5 4 8 8 C 1.46375 * 120.00188 * 354.70341 * 6 5 4 9 9 H 1.08007 * 119.99391 * 5.00075 * 8 6 5 10 10 C 1.40041 * 120.00157 * 185.00268 * 8 6 5 11 11 N 1.30673 * 120.00231 * 359.97438 * 10 8 6 12 12 Si 1.86799 * 119.99782 * 179.97438 * 10 8 6 13 13 H 1.48494 * 109.47470 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47302 * 120.00042 * 12 10 8 15 15 H 1.48503 * 109.47230 * 239.99716 * 12 10 8 16 16 C 1.47150 * 118.02463 * 50.46684 * 5 4 2 17 17 C 1.53295 * 108.41805 * 309.53341 * 16 5 4 18 18 H 1.08993 * 109.51270 * 292.35998 * 17 16 5 19 19 C 1.53001 * 109.51232 * 172.25677 * 17 16 5 20 20 O 1.42959 * 109.22249 * 52.28210 * 17 16 5 21 21 H 1.09004 * 109.47329 * 299.90319 * 1 2 3 22 22 H 1.09006 * 109.46905 * 59.89993 * 1 2 3 23 23 H 1.08998 * 109.47593 * 179.90078 * 1 2 3 24 24 H 1.09004 * 109.68199 * 307.47681 * 4 2 1 25 25 H 1.09000 * 109.68217 * 67.98685 * 4 2 1 26 26 H 0.96995 * 120.00054 * 179.97438 * 11 10 8 27 27 H 1.09006 * 109.68354 * 189.79056 * 16 5 4 28 28 H 1.09005 * 109.68665 * 69.27749 * 16 5 4 29 29 H 1.08996 * 109.47333 * 60.00742 * 19 17 16 30 30 H 1.09006 * 109.46771 * 180.02562 * 19 17 16 31 31 H 1.08992 * 109.47124 * 299.99960 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0431 -0.7251 -1.2493 5 7 3.5023 -0.8759 -1.1330 6 6 4.3207 -0.5034 -2.1369 7 8 5.5274 -0.5457 -1.9856 8 6 3.7581 -0.0482 -3.4092 9 1 2.6896 0.0664 -3.5169 10 6 4.6053 0.2388 -4.4868 11 7 5.8981 0.1005 -4.3563 12 14 3.8872 0.8191 -6.1106 13 1 2.4082 0.8922 -5.9999 14 1 4.4265 2.1633 -6.4382 15 1 4.2560 -0.1374 -7.1850 16 6 4.0415 -1.4440 0.1128 17 6 3.4311 -0.6839 1.2958 18 1 3.8021 0.3410 1.3004 19 6 3.8220 -1.3749 2.6037 20 8 2.0075 -0.6758 1.1658 21 1 -0.3634 0.5123 0.8909 22 1 -0.3633 0.5154 -0.8891 23 1 -0.3634 -1.0276 -0.0018 24 1 1.5775 -1.7081 -1.3204 25 1 1.8034 -0.1404 -2.1375 26 1 6.4849 0.2989 -5.1028 27 1 5.1261 -1.3351 0.1267 28 1 3.7779 -2.4996 0.1793 29 1 4.9078 -1.3838 2.6995 30 1 3.3873 -0.8341 3.4443 31 1 3.4492 -2.3990 2.5990 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000012339236.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:39 Heat of formation + Delta-G solvation = -110.728088 kcal Electronic energy + Delta-G solvation = -14818.748188 eV Core-core repulsion = 12292.081975 eV Total energy + Delta-G solvation = -2526.666212 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.83779 -38.69123 -35.24601 -34.93570 -34.43352 -31.13283 -29.13717 -27.36525 -26.26024 -22.94260 -22.27003 -21.04017 -18.60029 -17.90082 -17.60959 -16.59534 -16.41291 -15.92112 -15.47883 -15.05386 -14.61522 -13.91796 -13.84202 -13.31103 -13.25305 -13.10114 -13.01717 -12.81228 -12.78589 -12.46345 -12.15577 -11.97204 -11.93992 -11.51942 -11.02683 -10.88757 -9.86272 -9.11196 -8.33944 -6.89904 1.38643 1.38838 1.57144 2.20219 2.40053 2.56607 2.79403 3.51334 3.74675 4.03180 4.08774 4.12705 4.16435 4.45616 4.48662 4.59685 4.71607 4.79731 4.89774 4.96368 5.02570 5.11142 5.22123 5.32419 5.34597 5.64310 6.04030 6.22935 6.28267 6.82595 7.31714 8.38342 8.61849 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.038911 B = 0.009661 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.418421 B = 2897.466676 C = 3520.465315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.072 3.928 3 H 0.046 0.954 4 C 0.092 3.908 5 N -0.654 5.654 6 C 0.539 3.461 7 O -0.631 6.631 8 C -0.567 4.567 9 H 0.095 0.905 10 C 0.027 3.973 11 N -0.822 5.822 12 Si 0.999 3.001 13 H -0.242 1.242 14 H -0.269 1.269 15 H -0.268 1.268 16 C 0.089 3.911 17 C 0.080 3.920 18 H 0.042 0.958 19 C -0.131 4.131 20 O -0.383 6.383 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.275 0.725 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.917 -0.066 6.852 12.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.013 3.987 3 H 0.064 0.936 4 C -0.031 4.031 5 N -0.391 5.391 6 C 0.346 3.654 7 O -0.519 6.519 8 C -0.604 4.604 9 H 0.113 0.887 10 C -0.188 4.188 11 N -0.452 5.452 12 Si 0.818 3.182 13 H -0.165 1.165 14 H -0.193 1.193 15 H -0.193 1.193 16 C -0.035 4.035 17 C 0.021 3.979 18 H 0.060 0.940 19 C -0.188 4.188 20 O -0.303 6.303 21 H 0.093 0.907 22 H 0.108 0.892 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.215 -0.180 7.007 12.389 hybrid contribution 0.550 0.251 -0.904 1.087 sum -9.665 0.071 6.103 11.431 Atomic orbital electron populations 1.21693 0.89609 1.03700 1.03781 1.22624 0.97140 0.94373 0.84546 0.93578 1.22333 0.80323 1.00880 0.99549 1.48222 1.06919 1.67552 1.16361 1.18759 0.85225 0.77144 0.84311 1.90532 1.16955 1.61365 1.83007 1.21516 0.95405 1.47981 0.95452 0.88673 1.27054 0.94557 0.92628 1.04581 1.70193 1.05623 1.36510 1.32839 0.84955 0.80005 0.78144 0.75133 1.16509 1.19344 1.19329 1.22002 0.99199 0.97102 0.85169 1.22448 0.81283 0.98296 0.95834 0.94008 1.21684 1.02166 1.01213 0.93775 1.87841 1.20834 1.77813 1.43784 0.90730 0.89227 0.91170 0.91880 0.88757 0.91488 0.91830 0.92115 0.90084 0.90295 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 9.57 71.98 0.69 -2.26 16 2 C 0.07 2.30 3.40 30.69 0.10 2.41 16 3 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 4 C 0.09 3.54 5.79 86.35 0.50 4.04 16 5 N -0.65 -31.65 3.02 -822.40 -2.49 -34.13 16 6 C 0.54 32.32 7.63 86.36 0.66 32.98 16 7 O -0.63 -43.46 14.51 -4.31 -0.06 -43.52 16 8 C -0.57 -32.29 8.86 24.83 0.22 -32.07 16 9 H 0.10 4.80 5.76 -2.91 -0.02 4.78 16 10 C 0.03 1.50 5.50 85.30 0.47 1.97 16 11 N -0.82 -50.69 11.84 21.83 0.26 -50.43 16 12 Si 1.00 40.56 29.56 68.60 2.03 42.59 16 13 H -0.24 -8.93 7.11 99.48 0.71 -8.23 16 14 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 15 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 16 C 0.09 3.76 5.94 86.35 0.51 4.28 16 17 C 0.08 2.76 3.40 30.69 0.10 2.86 16 18 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 19 C -0.13 -3.31 9.57 71.98 0.69 -2.62 16 20 O -0.38 -12.83 10.03 -148.98 -1.49 -14.33 16 21 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.09 3.64 5.51 -2.39 -0.01 3.63 16 26 H 0.28 15.28 8.29 -92.71 -0.77 14.51 16 27 H 0.06 3.01 7.06 -2.38 -0.02 2.99 16 28 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 29 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.89 257.97 3.30 -72.59 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 1.11 Total: 15.66 kcal Atomic # 6 Polarization: 7.63 SS G_CDS: 3.95 Total: 11.57 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -2.23 Total: -84.57 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.56 Total: -57.85 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -75.89 3.30 -72.59 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000012339236.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.139 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds