Wall clock time and date at job start Sun Mar 29 2020 22:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00171 * 2 1 4 4 O 1.20831 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.53076 * 109.44152 * 59.79467 * 5 3 2 7 7 C 1.53183 * 109.29478 * 181.23529 * 6 5 3 8 8 N 1.46930 * 108.89468 * 305.57480 * 7 6 5 9 9 C 1.36937 * 120.63259 * 233.51494 * 8 7 6 10 10 H 1.08000 * 119.99761 * 151.83401 * 9 8 7 11 11 C 1.38806 * 120.00219 * 331.83653 * 9 8 7 12 12 N 1.31624 * 120.00191 * 343.07619 * 11 9 8 13 13 Si 1.86800 * 120.00146 * 163.07294 * 11 9 8 14 14 H 1.48506 * 109.46812 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47258 * 119.99807 * 13 11 9 16 16 H 1.48499 * 109.47344 * 240.00342 * 13 11 9 17 17 C 1.46925 * 118.73328 * 53.53726 * 8 7 6 18 18 C 1.53033 * 109.45781 * 179.97438 * 5 3 2 19 19 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47614 * 300.00457 * 1 2 3 21 21 H 1.09004 * 109.46988 * 59.99988 * 1 2 3 22 22 H 1.08994 * 109.45819 * 299.97351 * 5 3 2 23 23 H 1.09005 * 109.39190 * 61.35435 * 6 5 3 24 24 H 1.09004 * 109.62337 * 301.25228 * 6 5 3 25 25 H 1.09005 * 109.58619 * 185.72200 * 7 6 5 26 26 H 1.08998 * 109.58733 * 65.43770 * 7 6 5 27 27 H 0.96995 * 120.00379 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.58688 * 66.18006 * 17 8 7 29 29 H 1.08996 * 109.58570 * 186.45714 * 17 8 7 30 30 H 1.09003 * 109.49897 * 58.67896 * 18 5 3 31 31 H 1.09000 * 109.52987 * 298.59548 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1136 0.5760 -1.2465 7 6 5.6443 0.6311 -1.2270 8 7 6.0682 2.0304 -1.0811 9 6 6.9489 2.5888 -1.9686 10 1 6.9212 3.6511 -2.1609 11 6 7.8773 1.7894 -2.6212 12 7 8.1452 0.5845 -2.1641 13 14 8.7464 2.4235 -4.1483 14 1 8.2720 3.7973 -4.4533 15 1 10.2119 2.4481 -3.9096 16 1 8.4467 1.5297 -5.2956 17 6 5.5295 2.8188 0.0355 18 6 3.9999 2.7424 -0.0002 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 3.9554 0.7813 0.8911 23 1 3.7426 1.0827 -2.1375 24 1 3.7871 -0.4640 -1.2564 25 1 6.0365 0.2259 -2.1598 26 1 6.0203 0.0460 -0.3878 27 1 8.7942 0.0260 -2.6199 28 1 5.8940 2.4126 0.9790 29 1 5.8481 3.8565 -0.0628 30 1 3.5904 3.2433 0.8771 31 1 3.6320 3.2306 -0.9026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019426690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:59 Heat of formation + Delta-G solvation = -74.869371 kcal Electronic energy + Delta-G solvation = -14641.449522 eV Core-core repulsion = 12116.338260 eV Total energy + Delta-G solvation = -2525.111262 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34939 -37.40574 -36.14144 -33.22123 -30.78967 -29.75196 -27.83211 -25.61422 -22.99924 -22.17637 -20.62628 -19.11434 -17.26986 -16.92001 -16.35797 -15.91191 -14.80663 -13.97788 -13.69242 -13.54106 -13.15111 -13.06024 -12.58106 -12.27752 -12.00907 -11.44509 -11.20574 -10.94544 -10.72941 -10.68642 -10.48860 -10.25456 -10.08291 -9.89328 -9.63033 -9.49432 -8.48362 -6.69376 -5.80104 -3.22570 2.47429 2.95959 3.37614 3.45667 3.48173 4.49595 5.01532 5.12341 5.17818 5.26927 5.39695 5.40607 5.52412 5.54473 5.79560 6.06055 6.25947 6.45438 6.51190 6.52749 6.56057 6.64616 6.79526 6.97314 7.31076 7.61768 7.79981 8.00263 8.44166 9.20201 9.83189 10.39697 11.28832 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055814 B = 0.007546 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.546937 B = 3709.753746 C = 3874.063800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.516 6.516 5 C -0.070 4.070 6 C -0.132 4.132 7 C 0.172 3.828 8 N -0.594 5.594 9 C -0.252 4.252 10 H 0.067 0.933 11 C 0.002 3.998 12 N -0.903 5.903 13 Si 0.902 3.098 14 H -0.277 1.277 15 H -0.290 1.290 16 H -0.289 1.289 17 C 0.146 3.854 18 C -0.116 4.116 19 H 0.097 0.903 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.092 0.908 26 H 0.023 0.977 27 H 0.254 0.746 28 H 0.021 0.979 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.814 -1.796 3.928 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.404 6.404 5 C -0.090 4.090 6 C -0.171 4.171 7 C 0.046 3.954 8 N -0.317 5.317 9 C -0.381 4.381 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.548 5.548 13 Si 0.732 3.268 14 H -0.202 1.202 15 H -0.217 1.217 16 H -0.215 1.215 17 C 0.019 3.981 18 C -0.156 4.156 19 H 0.115 0.885 20 H 0.077 0.923 21 H 0.078 0.922 22 H 0.119 0.881 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.041 0.959 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.908 -1.605 3.855 11.680 hybrid contribution 0.145 0.248 -0.748 0.801 sum -10.763 -1.357 3.107 11.284 Atomic orbital electron populations 1.23189 0.77380 1.03228 1.02190 1.86561 1.22656 1.34165 1.84220 1.24475 0.92731 0.80808 0.71133 1.90607 1.67441 1.36486 1.45847 1.21136 0.84784 1.00439 1.02600 1.22269 1.01446 0.98742 0.94669 1.20801 0.86756 0.85726 1.02146 1.44109 1.50396 1.09112 1.28046 1.19242 1.08971 0.93486 1.16450 0.91551 1.25051 0.96960 0.97229 1.00413 1.70030 1.35236 1.10180 1.39358 0.86225 0.79077 0.78327 0.83174 1.20230 1.21705 1.21540 1.20931 0.89752 0.96299 0.91115 1.21978 0.99169 0.92384 1.02022 0.88453 0.92284 0.92183 0.88075 0.92216 0.91848 0.88966 0.95895 0.93633 0.96152 0.92169 0.92274 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.56 101.05 1.07 1.45 16 2 O -0.36 -5.41 10.44 -39.26 -0.41 -5.82 16 3 C 0.46 7.93 7.26 36.01 0.26 8.19 16 4 O -0.52 -9.78 15.73 -18.75 -0.29 -10.08 16 5 C -0.07 -1.23 2.59 -91.72 -0.24 -1.47 16 6 C -0.13 -2.51 5.31 -26.60 -0.14 -2.66 16 7 C 0.17 4.01 5.30 -3.71 -0.02 3.99 16 8 N -0.59 -14.80 2.99 -172.32 -0.52 -15.31 16 9 C -0.25 -6.89 9.58 -15.06 -0.14 -7.03 16 10 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 11 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 12 N -0.90 -25.93 11.20 55.49 0.62 -25.31 16 13 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 18 C -0.12 -2.14 4.66 -26.62 -0.12 -2.27 16 19 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 20 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 21 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 22 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 23 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.06 1.09 8.09 -51.93 -0.42 0.67 16 25 H 0.09 2.41 6.06 -51.93 -0.31 2.09 16 26 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 31 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 LS Contribution 259.39 15.07 3.91 3.91 Total: -1.00 -30.38 259.39 -5.66 -36.05 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -4.49 Total: -3.17 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 0.55 Total: 3.18 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.11 Total: -40.62 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.70 Total: -15.90 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -30.38 -5.66 -36.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019426690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.822 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds