Wall clock time and date at job start Sun Mar 29 2020 22:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00171 * 2 1 4 4 O 1.20831 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99981 * 179.97438 * 3 2 1 6 6 C 1.53076 * 109.44152 * 59.79467 * 5 3 2 7 7 C 1.53183 * 109.29478 * 181.23529 * 6 5 3 8 8 N 1.46930 * 108.89468 * 305.57480 * 7 6 5 9 9 C 1.36937 * 120.63259 * 233.51494 * 8 7 6 10 10 H 1.08000 * 119.99761 * 151.83401 * 9 8 7 11 11 C 1.38806 * 120.00219 * 331.83653 * 9 8 7 12 12 N 1.31624 * 120.00191 * 343.07619 * 11 9 8 13 13 Si 1.86800 * 120.00146 * 163.07294 * 11 9 8 14 14 H 1.48506 * 109.46812 * 0.02562 * 13 11 9 15 15 H 1.48499 * 109.47258 * 119.99807 * 13 11 9 16 16 H 1.48499 * 109.47344 * 240.00342 * 13 11 9 17 17 C 1.46925 * 118.73328 * 53.53726 * 8 7 6 18 18 C 1.53033 * 109.45781 * 179.97438 * 5 3 2 19 19 H 1.08997 * 109.47395 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47614 * 300.00457 * 1 2 3 21 21 H 1.09004 * 109.46988 * 59.99988 * 1 2 3 22 22 H 1.08994 * 109.45819 * 299.97351 * 5 3 2 23 23 H 1.09005 * 109.39190 * 61.35435 * 6 5 3 24 24 H 1.09004 * 109.62337 * 301.25228 * 6 5 3 25 25 H 1.09005 * 109.58619 * 185.72200 * 7 6 5 26 26 H 1.08998 * 109.58733 * 65.43770 * 7 6 5 27 27 H 0.96995 * 120.00379 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.58688 * 66.18006 * 17 8 7 29 29 H 1.08996 * 109.58570 * 186.45714 * 17 8 7 30 30 H 1.09003 * 109.49897 * 58.67896 * 18 5 3 31 31 H 1.09000 * 109.52987 * 298.59548 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1136 0.5760 -1.2465 7 6 5.6443 0.6311 -1.2270 8 7 6.0682 2.0304 -1.0811 9 6 6.9489 2.5888 -1.9686 10 1 6.9212 3.6511 -2.1609 11 6 7.8773 1.7894 -2.6212 12 7 8.1452 0.5845 -2.1641 13 14 8.7464 2.4235 -4.1483 14 1 8.2720 3.7973 -4.4533 15 1 10.2119 2.4481 -3.9096 16 1 8.4467 1.5297 -5.2956 17 6 5.5295 2.8188 0.0355 18 6 3.9999 2.7424 -0.0002 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 3.9554 0.7813 0.8911 23 1 3.7426 1.0827 -2.1375 24 1 3.7871 -0.4640 -1.2564 25 1 6.0365 0.2259 -2.1598 26 1 6.0203 0.0460 -0.3878 27 1 8.7942 0.0260 -2.6199 28 1 5.8940 2.4126 0.9790 29 1 5.8481 3.8565 -0.0628 30 1 3.5904 3.2433 0.8771 31 1 3.6320 3.2306 -0.9026 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019426690.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:08:58 Heat of formation + Delta-G solvation = -93.112538 kcal Electronic energy + Delta-G solvation = -14642.240605 eV Core-core repulsion = 12116.338260 eV Total energy + Delta-G solvation = -2525.902345 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.66158 -39.01430 -37.47072 -35.06525 -32.60458 -31.49019 -28.97294 -27.32633 -24.69488 -23.83794 -22.11978 -20.71480 -18.82024 -18.53864 -17.65940 -17.22206 -16.75058 -15.65839 -15.34747 -15.01254 -14.68838 -14.49309 -14.24652 -13.79169 -13.15523 -13.11662 -12.97064 -12.66982 -12.51279 -12.23705 -12.01715 -11.84097 -11.78457 -11.52650 -11.32135 -11.15757 -10.53991 -8.68866 -7.87484 -5.32451 1.14476 1.47392 1.49841 1.60034 1.78128 2.52340 3.27967 3.65875 3.72857 3.89993 3.95796 4.29832 4.33981 4.37926 4.44723 4.64949 4.70051 4.81509 4.95396 4.99785 5.06362 5.13430 5.32715 5.34786 5.49840 5.65668 5.73755 6.40485 6.72330 7.15877 7.85931 8.37222 9.19548 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.055814 B = 0.007546 C = 0.007226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.546937 B = 3709.753746 C = 3874.063800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.474 3.526 4 O -0.537 6.537 5 C -0.069 4.069 6 C -0.116 4.116 7 C 0.177 3.823 8 N -0.614 5.614 9 C -0.264 4.264 10 H 0.065 0.935 11 C -0.048 4.048 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.269 1.269 15 H -0.291 1.291 16 H -0.289 1.289 17 C 0.143 3.857 18 C -0.104 4.104 19 H 0.133 0.867 20 H 0.064 0.936 21 H 0.058 0.942 22 H 0.118 0.882 23 H 0.048 0.952 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.011 0.989 27 H 0.251 0.749 28 H 0.028 0.972 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.062 -1.871 4.232 12.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.088 4.088 6 C -0.156 4.156 7 C 0.052 3.948 8 N -0.337 5.337 9 C -0.394 4.394 10 H 0.082 0.918 11 C -0.243 4.243 12 N -0.579 5.579 13 Si 0.793 3.207 14 H -0.194 1.194 15 H -0.218 1.218 16 H -0.216 1.216 17 C 0.018 3.982 18 C -0.143 4.143 19 H 0.151 0.849 20 H 0.083 0.917 21 H 0.077 0.923 22 H 0.136 0.864 23 H 0.067 0.933 24 H 0.103 0.897 25 H 0.078 0.922 26 H 0.029 0.971 27 H 0.060 0.940 28 H 0.046 0.954 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.184 -1.679 4.174 12.988 hybrid contribution 0.472 0.247 -0.790 0.953 sum -11.711 -1.432 3.384 12.274 Atomic orbital electron populations 1.23563 0.74923 1.05727 1.02470 1.86529 1.24986 1.32745 1.83578 1.24095 0.92247 0.81129 0.70704 1.90606 1.67793 1.37301 1.46986 1.21028 0.85778 0.99636 1.02336 1.22016 0.98095 1.00269 0.95190 1.20611 0.89424 0.84895 0.99893 1.44382 1.50460 1.09844 1.29056 1.19528 1.09205 0.93625 1.17048 0.91757 1.25760 0.98009 0.97586 1.02979 1.70161 1.35993 1.11241 1.40484 0.85247 0.77704 0.78009 0.79720 1.19371 1.21784 1.21582 1.21052 0.91340 0.95758 0.90079 1.21789 0.97022 0.93297 1.02227 0.84924 0.91699 0.92276 0.86422 0.93285 0.89655 0.92233 0.97088 0.93965 0.95444 0.92202 0.90157 0.92998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.86 10.44 -51.44 -0.54 -10.40 16 3 C 0.47 15.06 7.26 71.24 0.52 15.57 16 4 O -0.54 -19.24 15.73 21.95 0.35 -18.89 16 5 C -0.07 -2.27 2.59 -11.50 -0.03 -2.30 16 6 C -0.12 -4.32 5.31 30.68 0.16 -4.15 16 7 C 0.18 8.33 5.30 86.36 0.46 8.79 16 8 N -0.61 -30.67 2.99 -699.11 -2.09 -32.77 16 9 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 10 H 0.06 3.48 7.89 -2.91 -0.02 3.46 16 11 C -0.05 -2.65 4.92 84.86 0.42 -2.24 16 12 N -0.93 -54.42 11.20 21.65 0.24 -54.17 16 13 Si 0.96 44.72 29.59 68.60 2.03 46.75 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 15 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 16 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 17 C 0.14 5.87 6.52 86.36 0.56 6.43 16 18 C -0.10 -3.68 4.66 30.67 0.14 -3.54 16 19 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 21 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 22 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 23 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.08 2.77 8.09 -2.38 -0.02 2.75 16 25 H 0.06 3.18 6.06 -2.38 -0.01 3.17 16 26 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 27 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 2.41 7.93 -2.39 -0.02 2.39 16 30 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 31 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 Total: -1.00 -64.37 259.39 5.32 -59.05 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.10 Total: 3.90 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 4.23 Total: 6.54 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -1.85 Total: -86.94 kcal Atomic # 8 Polarization: -29.10 SS G_CDS: -0.19 Total: -29.30 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -64.37 5.32 -59.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019426690.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.063 kcal (2) G-P(sol) polarization free energy of solvation -64.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds